Wall clock time and date at job start Tue Mar 31 2020 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.53004 * 110.53549 * 302.82687 * 3 2 1 5 5 N 1.47314 * 110.60097 * 65.82090 * 3 2 1 6 6 C 1.34528 * 106.61500 * 118.52523 * 5 3 2 7 7 O 1.21545 * 123.77067 * 179.97438 * 6 5 3 8 8 N 1.33787 * 112.45957 * 0.02562 * 6 5 3 9 9 C 1.46504 * 124.17608 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47064 * 269.95410 * 9 8 6 11 11 C 1.38329 * 119.96746 * 269.72562 * 10 9 8 12 12 C 1.38279 * 120.13858 * 179.76601 * 11 10 9 13 13 C 1.38129 * 120.06788 * 0.51177 * 12 11 10 14 14 C 1.38856 * 119.93014 * 359.74593 * 13 12 11 15 15 O 1.35748 * 120.06810 * 179.97438 * 14 13 12 16 16 C 1.34833 * 117.00295 * 354.48801 * 15 14 13 17 17 H 1.07998 * 119.99454 * 5.05580 * 16 15 14 18 18 C 1.38647 * 120.00497 * 185.05793 * 16 15 14 19 19 N 1.31561 * 119.99662 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00486 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46896 * 89.99857 * 20 18 16 22 22 H 1.48502 * 109.47189 * 210.00123 * 20 18 16 23 23 H 1.48502 * 109.46816 * 330.00081 * 20 18 16 24 24 C 1.38076 * 119.96450 * 90.00416 * 10 9 8 25 25 C 1.34763 * 111.64868 * 359.97438 * 8 6 5 26 26 O 1.21235 * 127.16510 * 179.97438 * 25 8 6 27 27 H 1.09005 * 109.47063 * 60.00190 * 1 2 3 28 28 H 1.09000 * 109.46887 * 300.00282 * 1 2 3 29 29 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47063 * 119.99810 * 2 1 3 31 31 H 1.09000 * 109.46887 * 239.99718 * 2 1 3 32 32 H 1.09004 * 109.47032 * 60.00389 * 4 3 2 33 33 H 1.09001 * 109.47023 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47228 * 300.00066 * 4 3 2 35 35 H 0.96995 * 126.69494 * 298.51092 * 5 3 2 36 36 H 1.08997 * 109.47265 * 29.95755 * 9 8 6 37 37 H 1.09008 * 109.47177 * 149.96095 * 9 8 6 38 38 H 1.07993 * 119.92907 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.96779 * 180.25564 * 12 11 10 40 40 H 1.07997 * 120.03138 * 179.76957 * 13 12 11 41 41 H 0.97001 * 119.99980 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03872 * 359.94941 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4866 2.2074 -1.2040 5 7 1.6803 2.1194 1.2580 6 6 2.8363 2.4654 1.8528 7 8 2.9003 3.0466 2.9183 8 7 3.9075 2.0994 1.1398 9 6 5.2923 2.3482 1.5484 10 6 5.7431 3.6815 1.0098 11 6 6.3456 3.7567 -0.2330 12 6 6.7563 4.9789 -0.7327 13 6 6.5753 6.1275 0.0129 14 6 5.9756 6.0546 1.2631 15 8 5.7968 7.1816 1.9985 16 6 6.3253 8.3217 1.5098 17 1 6.7904 8.3268 0.5351 18 6 6.2715 9.4875 2.2584 19 7 5.7044 9.4813 3.4455 20 14 7.0043 11.0668 1.5816 21 1 5.9679 11.8050 0.8161 22 1 7.4849 11.9107 2.7051 23 1 8.1427 10.7401 0.6857 24 6 5.5594 4.8260 1.7600 25 6 3.5556 1.4725 -0.0001 26 8 4.2967 1.0262 -0.8494 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.3976 2.2173 -1.1589 33 1 1.8599 3.2313 -1.1867 34 1 1.8078 1.7187 -2.1238 35 1 0.7847 2.2838 1.5921 36 1 5.3542 2.3561 2.6365 37 1 5.9347 1.5609 1.1535 38 1 6.4926 2.8594 -0.8158 39 1 7.2227 5.0350 -1.7052 40 1 6.8996 7.0813 -0.3764 41 1 5.6665 10.2969 3.9691 42 1 5.0922 4.7663 2.7319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255832696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:35 Heat of formation + Delta-G solvation = -70.799782 kcal Electronic energy + Delta-G solvation = -26815.218244 eV Core-core repulsion = 22953.969409 eV Total energy + Delta-G solvation = -3861.248835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.64167 -40.84614 -39.73686 -38.68635 -37.85972 -36.52193 -34.35540 -33.84132 -32.25747 -30.87251 -30.34874 -28.15767 -27.26349 -26.28002 -24.42738 -23.36659 -23.04353 -21.72322 -21.41663 -19.63232 -19.02387 -18.85677 -17.84162 -17.41491 -16.87255 -16.66622 -16.56040 -16.38363 -16.14268 -15.92138 -15.53387 -15.34720 -15.24171 -14.92800 -14.51258 -14.24665 -13.99499 -13.67177 -13.60109 -13.16171 -13.09575 -13.06672 -12.95475 -12.70052 -12.58830 -12.34218 -12.31031 -12.13568 -11.91296 -11.81748 -11.35277 -11.13570 -10.91048 -10.83875 -10.48800 -9.82799 -9.09065 -8.48943 -6.18732 0.25009 0.55150 0.64500 1.28285 1.33254 1.43875 1.51745 1.91532 2.13362 2.15887 2.76790 2.87839 3.11431 3.35060 3.47396 3.70029 3.78277 3.91906 4.09391 4.25267 4.30977 4.32895 4.39407 4.46914 4.50192 4.58787 4.59033 4.66941 4.77646 4.83998 4.95464 5.03154 5.07951 5.11125 5.19442 5.21488 5.44747 5.56208 5.63434 5.64824 5.79220 5.98630 6.01126 6.10939 6.33298 6.94600 7.07065 7.75137 8.74416 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.003229 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.235895 B = 8670.606241 C = 9126.375488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.126 3.874 4 C -0.148 4.148 5 N -0.703 5.703 6 C 0.694 3.306 7 O -0.580 6.580 8 N -0.572 5.572 9 C 0.164 3.836 10 C -0.073 4.073 11 C -0.168 4.168 12 C -0.071 4.071 13 C -0.232 4.232 14 C 0.111 3.889 15 O -0.233 6.233 16 C -0.416 4.416 17 H 0.104 0.896 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.022 2.978 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.251 1.251 24 C -0.177 4.177 25 C 0.526 3.474 26 O -0.479 6.479 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.448 0.552 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.124 0.876 41 H 0.273 0.727 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 -20.120 -11.660 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.036 3.964 4 C -0.205 4.205 5 N -0.368 5.368 6 C 0.395 3.605 7 O -0.456 6.456 8 N -0.317 5.317 9 C 0.044 3.956 10 C -0.074 4.074 11 C -0.187 4.187 12 C -0.088 4.088 13 C -0.251 4.251 14 C 0.061 3.939 15 O -0.140 6.140 16 C -0.492 4.492 17 H 0.121 0.879 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.174 1.174 24 C -0.197 4.197 25 C 0.315 3.685 26 O -0.350 6.350 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.295 0.705 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.746 -19.902 -11.157 24.435 hybrid contribution 0.074 1.342 0.637 1.487 sum -8.672 -18.560 -10.520 23.029 Atomic orbital electron populations 1.21829 0.92346 1.03582 1.03063 1.21752 0.98893 0.89845 1.04407 1.21703 0.89907 0.97693 0.87058 1.22100 1.04026 0.99238 0.95179 1.45618 1.07362 1.61479 1.22383 1.16152 0.82196 0.78859 0.83327 1.91032 1.85995 1.45765 1.22804 1.46512 1.08329 1.54259 1.22636 1.20577 0.78849 0.94542 1.01634 1.19727 0.99078 0.93493 0.95135 1.20972 1.03632 0.98365 0.95693 1.21164 0.97107 0.91108 0.99463 1.21366 1.07601 1.00558 0.95572 1.19847 0.94623 0.87671 0.91754 1.83967 1.68736 1.14701 1.46561 1.21864 1.38350 0.84977 1.03989 0.87871 1.26668 0.97249 1.02694 0.95540 1.70212 1.43360 1.30040 1.12339 0.84552 0.78708 0.74688 0.78008 1.18706 1.19577 1.17422 1.20220 1.07654 0.90489 1.01319 1.21322 0.91962 0.75385 0.79874 1.90751 1.60022 1.45476 1.38711 0.90553 0.92299 0.90707 0.91187 0.88351 0.87271 0.93370 0.88571 0.70489 0.88247 0.85239 0.83866 0.83146 0.85813 0.91805 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.41 71.98 0.68 -0.23 16 2 C -0.11 -1.15 5.30 30.59 0.16 -0.98 16 3 C 0.13 2.05 1.01 2.98 0.00 2.06 16 4 C -0.15 -1.95 8.55 71.98 0.62 -1.34 16 5 N -0.70 -13.75 5.62 -439.80 -2.47 -16.22 16 6 C 0.69 20.73 8.62 179.44 1.55 22.28 16 7 O -0.58 -22.88 17.48 -3.86 -0.07 -22.95 16 8 N -0.57 -15.96 2.59 -777.21 -2.01 -17.97 16 9 C 0.16 4.80 5.82 85.63 0.50 5.30 16 10 C -0.07 -2.68 5.46 -19.88 -0.11 -2.79 16 11 C -0.17 -5.56 9.70 22.30 0.22 -5.34 16 12 C -0.07 -2.48 10.04 22.25 0.22 -2.26 16 13 C -0.23 -10.36 9.17 22.39 0.21 -10.15 16 14 C 0.11 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.71 9.76 -22.75 -0.22 -14.93 16 16 C -0.42 -24.91 9.49 67.92 0.64 -24.27 16 17 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -58.37 13.67 21.61 0.30 -58.07 16 20 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 24 C -0.18 -8.29 9.65 22.39 0.22 -8.07 16 25 C 0.53 12.45 6.98 87.94 0.61 13.06 16 26 O -0.48 -12.55 17.76 -2.89 -0.05 -12.61 16 27 H 0.08 0.31 6.47 -2.38 -0.02 0.29 16 28 H 0.06 0.36 7.40 -2.39 -0.02 0.34 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.84 6.49 -2.39 -0.02 0.82 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.45 6.56 8.40 -92.71 -0.78 5.78 16 36 H 0.10 2.97 7.80 -2.39 -0.02 2.95 16 37 H 0.13 2.99 7.95 -2.38 -0.02 2.97 16 38 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 39 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -81.97 357.63 3.92 -78.06 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.29 Total: 26.68 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.13 Total: -7.67 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -4.19 Total: -92.27 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.34 Total: -50.49 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -81.97 3.92 -78.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255832696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.256 kcal (2) G-P(sol) polarization free energy of solvation -81.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds