Wall clock time and date at job start Tue Mar 31 2020 12:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21590 * 120.00479 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00072 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00427 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47450 * 179.97438 * 16 15 13 18 18 H 1.09005 * 109.38512 * 304.79130 * 17 16 15 19 19 C 1.52589 * 109.38525 * 64.47417 * 17 16 15 20 20 C 1.52587 * 110.64511 * 190.14379 * 19 17 16 21 21 C 1.53031 * 109.98925 * 290.01678 * 20 19 17 22 22 S 1.81677 * 109.00067 * 63.64635 * 21 20 19 23 23 O 1.42099 * 108.66336 * 191.37574 * 22 21 20 24 24 O 1.42094 * 108.66021 * 60.02989 * 22 21 20 25 25 C 1.53036 * 109.38959 * 185.00368 * 17 16 15 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 0.96992 * 119.99570 * 0.02562 * 12 11 10 34 34 H 0.97005 * 120.00065 * 359.97438 * 15 13 12 35 35 H 1.09000 * 109.47182 * 300.00307 * 16 15 13 36 36 H 1.09005 * 109.47102 * 60.00084 * 16 15 13 37 37 H 1.08997 * 109.24386 * 310.44672 * 19 17 16 38 38 H 1.09003 * 109.24250 * 69.84703 * 19 17 16 39 39 H 1.09002 * 109.38788 * 169.85572 * 20 19 17 40 40 H 1.09005 * 109.38359 * 50.17097 * 20 19 17 41 41 H 1.08998 * 109.54841 * 303.79047 * 21 20 19 42 42 H 1.08996 * 109.55178 * 183.50119 * 21 20 19 43 43 H 1.09006 * 109.54490 * 296.04857 * 25 17 16 44 44 H 1.08998 * 109.55104 * 56.23833 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 1.9828 -7.3713 0.0015 14 8 0.7874 -7.5935 0.0024 15 7 2.8585 -8.3958 0.0014 16 6 2.3702 -9.7770 0.0019 17 6 3.5601 -10.7387 0.0011 18 1 4.2097 -10.5098 -0.8438 19 6 4.3448 -10.5745 1.2994 20 6 5.6686 -11.3300 1.2271 21 6 5.4118 -12.8385 1.2483 22 16 4.4744 -13.2999 -0.2379 23 8 4.0126 -14.6354 -0.0879 24 8 5.2386 -12.9512 -1.3840 25 6 3.0512 -12.1765 -0.1243 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8895 30 1 2.8718 -3.6044 0.8904 31 1 0.8537 -5.0445 0.8914 32 1 0.8532 -5.0451 -0.8886 33 1 3.3857 -5.9235 0.0002 34 1 3.8123 -8.2186 0.0004 35 1 1.7649 -9.9480 0.8921 36 1 1.7643 -9.9484 -0.8879 37 1 4.5439 -9.5162 1.4675 38 1 3.7537 -10.9642 2.1282 39 1 6.2884 -11.0565 2.0810 40 1 6.1869 -11.0642 0.3057 41 1 4.8371 -13.0982 2.1373 42 1 6.3632 -13.3703 1.2591 43 1 2.4553 -12.4302 0.7524 44 1 2.4386 -12.2697 -1.0211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259060445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:31 Heat of formation + Delta-G solvation = -158.376974 kcal Electronic energy + Delta-G solvation = -24001.615775 eV Core-core repulsion = 20272.013259 eV Total energy + Delta-G solvation = -3729.602515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09313 -39.01376 -37.93710 -37.06185 -36.95697 -35.39362 -35.15699 -33.32759 -32.52254 -28.94169 -28.44296 -27.04201 -24.79692 -23.40016 -22.28157 -21.87016 -21.49646 -19.78004 -19.26982 -18.53403 -17.85930 -17.39786 -16.93998 -16.91257 -16.61686 -16.46226 -16.10798 -15.83237 -15.34665 -15.31988 -15.15985 -14.38077 -14.25303 -13.94499 -13.79178 -13.75406 -13.70291 -13.39725 -13.17971 -13.07532 -12.73824 -12.56266 -12.52460 -12.35013 -12.33103 -12.10699 -11.74909 -11.65176 -11.64292 -11.58070 -11.29491 -11.13674 -10.94268 -10.53968 -10.36815 -9.73481 -8.18072 -6.29370 -0.90736 1.42897 1.44176 1.54992 1.65428 1.84946 2.17221 2.43128 2.75653 2.97988 3.15736 3.34359 3.52869 3.60980 3.77671 3.80867 3.97213 4.16662 4.20092 4.26217 4.41061 4.42284 4.59010 4.65811 4.68938 4.80874 4.85706 4.98347 4.99250 5.03949 5.12901 5.19393 5.20603 5.34439 5.48589 5.51853 5.57160 5.73511 5.86277 6.04121 6.24347 6.88239 7.14781 7.40110 7.61121 8.93971 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037418 B = 0.001771 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.129295 B =15805.585222 C =16193.858225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.696 3.304 14 O -0.642 6.642 15 N -0.730 5.730 16 C 0.146 3.854 17 C -0.084 4.084 18 H 0.104 0.896 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.585 4.585 22 S 2.418 3.582 23 O -0.990 6.990 24 O -0.979 6.979 25 C -0.593 4.593 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.413 0.587 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.168 -27.758 4.659 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.396 3.604 14 O -0.524 6.524 15 N -0.388 5.388 16 C 0.021 3.979 17 C -0.103 4.103 18 H 0.122 0.878 19 C -0.181 4.181 20 C -0.151 4.151 21 C -0.717 4.717 22 S 2.606 3.394 23 O -0.987 6.987 24 O -0.977 6.977 25 C -0.724 4.724 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.180 0.820 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.147 -28.549 3.983 32.110 hybrid contribution 0.228 1.580 0.309 1.626 sum 14.375 -26.970 4.292 30.861 Atomic orbital electron populations 1.70115 1.07944 1.27744 1.51736 1.26040 0.95765 1.03604 0.94884 0.85407 0.78698 0.78281 0.78395 1.19927 1.21143 1.18333 1.21687 0.93776 0.91969 1.50313 0.91436 1.18955 0.94507 0.93022 0.95069 1.21580 0.98393 0.91645 1.02171 1.21055 0.91380 0.84712 1.00374 1.45009 1.10850 1.03568 1.79141 1.16179 0.85068 0.81444 0.77729 1.90903 1.16619 1.84867 1.60026 1.44919 1.09370 1.04626 1.79881 1.21226 0.95910 0.78392 1.02394 1.21105 0.96913 0.90888 1.01434 0.87799 1.21911 0.95808 1.03615 0.96722 1.21354 0.98483 0.89099 1.06115 1.30096 1.15457 1.06726 1.19470 1.07722 0.78235 0.75355 0.78096 1.93551 1.81917 1.35529 1.87686 1.93543 1.70103 1.85165 1.48855 1.30224 1.19298 1.08831 1.14037 0.92867 0.98912 0.99059 0.91371 0.91206 0.93506 0.93754 0.75073 0.74869 0.91282 0.92456 0.88707 0.88743 0.87447 0.89672 0.82293 0.83530 0.82001 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 2 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.72 5.27 30.59 0.16 -3.56 16 11 C 0.15 5.16 5.67 86.38 0.49 5.65 16 12 N -0.73 -18.76 5.56 -478.54 -2.66 -21.42 16 13 C 0.70 18.99 8.57 179.06 1.53 20.52 16 14 O -0.64 -24.30 16.34 -4.00 -0.07 -24.37 16 15 N -0.73 -11.69 5.16 -478.55 -2.47 -14.16 16 16 C 0.15 1.98 5.06 86.38 0.44 2.42 16 17 C -0.08 -0.54 2.06 -10.92 -0.02 -0.56 16 18 H 0.10 0.63 8.01 -2.38 -0.02 0.61 16 19 C -0.14 -0.36 4.88 30.32 0.15 -0.22 16 20 C -0.11 -0.17 5.73 30.47 0.17 0.00 16 21 C -0.59 -1.20 6.35 71.99 0.46 -0.74 16 22 S 2.42 23.51 5.31 -56.49 -0.30 23.21 16 23 O -0.99 -18.24 18.10 -127.40 -2.31 -20.54 16 24 O -0.98 -17.48 17.94 -127.40 -2.28 -19.76 16 25 C -0.59 -3.31 5.62 71.99 0.40 -2.91 16 26 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 7.46 8.49 -92.71 -0.79 6.67 16 34 H 0.41 3.60 7.64 -92.70 -0.71 2.89 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 0.19 6.91 -2.39 -0.02 0.18 16 38 H 0.09 0.03 8.09 -2.39 -0.02 0.02 16 39 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.08 0.20 8.01 -2.38 -0.02 0.18 16 41 H 0.16 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.16 0.15 8.14 -2.38 -0.02 0.13 16 44 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -87.52 370.36 -3.64 -91.16 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -0.49 Total: 4.45 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.63 Total: -7.39 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -4.85 Total: -92.10 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -4.66 Total: -64.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -0.30 Total: 23.21 kcal Total: -87.52 -3.64 -91.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259060445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.213 kcal (2) G-P(sol) polarization free energy of solvation -87.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds