Wall clock time and date at job start Tue Mar 31 2020 12:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48498 * 109.47243 * 239.99870 * 3 2 1 5 5 H 1.48504 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99886 * 3 2 1 7 7 C 1.37874 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00211 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47237 * 179.72043 * 16 15 13 18 18 H 1.09007 * 109.38322 * 55.20728 * 17 16 15 19 19 C 1.52588 * 109.38577 * 295.52423 * 17 16 15 20 20 C 1.52589 * 110.64155 * 169.85333 * 19 17 16 21 21 C 1.53036 * 109.98466 * 69.98900 * 20 19 17 22 22 S 1.81675 * 108.99675 * 296.35065 * 21 20 19 23 23 O 1.42101 * 108.66192 * 299.96604 * 22 21 20 24 24 O 1.42101 * 108.66472 * 168.62934 * 22 21 20 25 25 C 1.53037 * 109.38420 * 174.99540 * 17 16 15 26 26 H 0.96993 * 120.00440 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46606 * 60.00005 * 9 7 2 28 28 H 1.08998 * 109.47358 * 300.00739 * 9 7 2 29 29 H 1.08998 * 109.47353 * 60.00160 * 10 9 7 30 30 H 1.09001 * 109.47005 * 300.00178 * 10 9 7 31 31 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 32 32 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 33 33 H 0.97004 * 119.99747 * 0.02562 * 12 11 10 34 34 H 0.97005 * 120.00161 * 359.72198 * 15 13 12 35 35 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 36 36 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 37 37 H 1.08994 * 109.23830 * 290.15620 * 19 17 16 38 38 H 1.08996 * 109.24268 * 49.55811 * 19 17 16 39 39 H 1.09001 * 109.38832 * 309.83134 * 20 19 17 40 40 H 1.08996 * 109.29949 * 190.08787 * 20 19 17 41 41 H 1.09001 * 109.55350 * 176.49799 * 21 20 19 42 42 H 1.08999 * 109.63176 * 56.24802 * 21 20 19 43 43 H 1.08998 * 109.55125 * 303.66643 * 25 17 16 44 44 H 1.09003 * 109.54869 * 63.95158 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0015 11 6 1.4807 -4.9871 0.0020 12 7 2.4327 -6.1005 0.0011 13 6 1.9836 -7.3712 0.0019 14 8 0.7882 -7.5935 0.0029 15 7 2.8595 -8.3955 0.0017 16 6 2.3712 -9.7768 0.0020 17 6 3.5613 -10.7384 -0.0055 18 1 4.2156 -10.5107 0.8361 19 6 4.3385 -10.5723 -1.3080 20 6 5.6628 -11.3276 -1.2443 21 6 5.4060 -12.8362 -1.2663 22 16 4.4771 -13.2998 0.2246 23 8 5.2478 -12.9527 1.3668 24 8 4.0146 -14.6351 0.0753 25 6 3.0531 -12.1764 0.1208 26 1 -0.4850 0.8399 -0.0004 27 1 0.6243 -2.5574 -0.8881 28 1 0.6249 -2.5563 0.8919 29 1 2.8729 -3.6038 0.8909 30 1 2.8715 -3.6045 -0.8890 31 1 0.8536 -5.0450 -0.8877 32 1 0.8544 -5.0447 0.8923 33 1 3.3864 -5.9232 0.0007 34 1 3.8132 -8.2182 -0.0032 35 1 1.7701 -9.9494 0.8947 36 1 1.7612 -9.9468 -0.8852 37 1 3.7426 -10.9608 -2.1338 38 1 4.5366 -9.5137 -1.4756 39 1 6.1864 -11.0632 -0.3255 40 1 6.2761 -11.0525 -2.1023 41 1 6.3574 -13.3679 -1.2833 42 1 4.8269 -13.0962 -2.1523 43 1 2.4472 -12.2714 1.0218 44 1 2.4522 -12.4289 -0.7529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259060446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:37 Heat of formation + Delta-G solvation = -126.827991 kcal Electronic energy + Delta-G solvation = -24000.497248 eV Core-core repulsion = 20272.262799 eV Total energy + Delta-G solvation = -3728.234449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.06733 -38.49205 -37.38652 -36.52089 -35.55383 -34.59835 -33.35568 -32.52761 -31.05032 -28.36079 -27.32326 -25.97592 -23.29256 -22.84940 -21.12912 -20.92747 -20.43544 -19.35084 -18.23288 -17.34706 -16.98685 -16.47428 -16.16421 -15.98049 -15.90213 -15.48916 -15.14864 -14.59958 -14.40618 -14.19089 -14.03601 -13.97397 -13.58144 -13.28705 -13.10668 -12.60707 -12.51093 -12.28871 -12.23386 -11.99776 -11.85234 -11.83276 -11.68667 -11.46237 -11.20449 -10.89743 -10.74336 -10.65065 -10.63087 -10.17506 -9.87618 -9.46155 -9.29854 -9.15245 -8.65675 -8.38200 -6.02874 -4.06185 -0.52667 2.10020 2.70708 3.12645 3.30584 3.30836 3.35745 3.36122 3.37604 3.81829 3.86063 4.02731 4.10146 4.23064 4.36546 4.43394 4.44504 4.63274 4.81705 4.90228 4.93748 5.07648 5.26632 5.32700 5.36048 5.39107 5.49568 5.60559 5.69459 5.78906 6.15604 6.31611 6.49071 6.59923 6.75503 6.99550 7.01008 7.62096 7.74997 7.95713 8.08080 8.36481 8.68763 9.00284 9.57915 11.08317 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037431 B = 0.001771 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.856497 B =15805.124326 C =16193.293000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.700 3.300 14 O -0.592 6.592 15 N -0.753 5.753 16 C 0.150 3.850 17 C -0.090 4.090 18 H 0.100 0.900 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.604 4.604 22 S 2.418 3.582 23 O -0.935 6.935 24 O -0.943 6.943 25 C -0.599 4.599 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.507 -27.734 -3.443 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.400 3.600 14 O -0.470 6.470 15 N -0.411 5.411 16 C 0.025 3.975 17 C -0.110 4.110 18 H 0.119 0.881 19 C -0.179 4.179 20 C -0.149 4.149 21 C -0.734 4.734 22 S 2.601 3.399 23 O -0.932 6.932 24 O -0.940 6.940 25 C -0.729 4.729 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.399 -28.466 -2.793 30.790 hybrid contribution 1.078 1.596 -0.672 2.040 sum 12.477 -26.869 -3.464 29.827 Atomic orbital electron populations 1.69951 1.06049 1.26820 1.50408 1.25034 0.94871 0.99309 0.95284 0.86635 0.79546 0.83088 0.78561 1.20274 1.21276 1.20250 1.21159 0.92938 0.90951 1.51110 0.92710 1.19024 0.93855 0.90799 0.97697 1.21889 0.99792 0.93323 1.00818 1.21521 0.91288 0.84134 1.01909 1.45390 1.10481 1.04444 1.79206 1.15996 0.85253 0.80784 0.78015 1.90930 1.14149 1.84129 1.57814 1.45113 1.08996 1.05176 1.81803 1.21097 0.94539 0.78812 1.03097 1.21140 0.98131 0.91681 1.00027 0.88137 1.21856 0.95637 1.03013 0.97355 1.21292 0.98580 0.89645 1.05365 1.30247 1.15263 1.06371 1.21488 1.08027 0.78110 0.76142 0.77661 1.93606 1.68676 1.84836 1.46051 1.93612 1.80984 1.32549 1.86842 1.30295 1.19980 1.09999 1.12608 0.92856 0.96258 0.96235 0.92749 0.92783 0.91947 0.91929 0.77303 0.77095 0.91058 0.91076 0.90115 0.89187 0.89507 0.89192 0.84769 0.84800 0.84122 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.13 2.33 5.67 -4.04 -0.02 2.30 16 12 N -0.74 -10.08 5.56 -65.23 -0.36 -10.44 16 13 C 0.70 9.91 8.57 -86.92 -0.74 9.16 16 14 O -0.59 -11.14 16.34 5.29 0.09 -11.05 16 15 N -0.75 -6.77 5.17 -65.22 -0.34 -7.11 16 16 C 0.15 1.13 5.06 -4.04 -0.02 1.11 16 17 C -0.09 -0.39 2.06 -90.81 -0.19 -0.58 16 18 H 0.10 0.40 8.01 -51.93 -0.42 -0.01 16 19 C -0.14 -0.42 4.88 -27.15 -0.13 -0.55 16 20 C -0.11 -0.28 5.73 -26.92 -0.15 -0.43 16 21 C -0.60 -1.51 6.35 37.18 0.24 -1.27 16 22 S 2.42 12.69 5.31 -107.50 -0.57 12.12 16 23 O -0.93 -8.30 17.94 -57.81 -1.04 -9.34 16 24 O -0.94 -8.64 18.10 -57.81 -1.05 -9.69 16 25 C -0.60 -2.13 5.62 37.18 0.21 -1.92 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.39 4.11 8.49 -40.82 -0.35 3.77 16 34 H 0.39 2.31 7.64 -40.82 -0.31 2.00 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 38 H 0.09 0.26 6.91 -51.93 -0.36 -0.10 16 39 H 0.09 0.22 8.01 -51.93 -0.42 -0.19 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.13 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.13 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -39.20 370.36 -10.78 -49.99 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.31 Total: -3.04 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.51 Total: -7.40 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.04 Total: -43.44 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -2.00 Total: -30.08 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 12.69 SS G_CDS: -0.57 Total: 12.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.20 -10.78 -49.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259060446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.840 kcal (2) G-P(sol) polarization free energy of solvation -39.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds