Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48498 * 109.47243 * 239.99870 * 3 2 1 5 5 H 1.48504 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99886 * 3 2 1 7 7 C 1.37874 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00211 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47237 * 179.72043 * 16 15 13 18 18 H 1.09007 * 109.38322 * 55.20728 * 17 16 15 19 19 C 1.52588 * 109.38577 * 295.52423 * 17 16 15 20 20 C 1.52589 * 110.64155 * 169.85333 * 19 17 16 21 21 C 1.53036 * 109.98466 * 69.98900 * 20 19 17 22 22 S 1.81675 * 108.99675 * 296.35065 * 21 20 19 23 23 O 1.42101 * 108.66192 * 299.96604 * 22 21 20 24 24 O 1.42101 * 108.66472 * 168.62934 * 22 21 20 25 25 C 1.53037 * 109.38420 * 174.99540 * 17 16 15 26 26 H 0.96993 * 120.00440 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46606 * 60.00005 * 9 7 2 28 28 H 1.08998 * 109.47358 * 300.00739 * 9 7 2 29 29 H 1.08998 * 109.47353 * 60.00160 * 10 9 7 30 30 H 1.09001 * 109.47005 * 300.00178 * 10 9 7 31 31 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 32 32 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 33 33 H 0.97004 * 119.99747 * 0.02562 * 12 11 10 34 34 H 0.97005 * 120.00161 * 359.72198 * 15 13 12 35 35 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 36 36 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 37 37 H 1.08994 * 109.23830 * 290.15620 * 19 17 16 38 38 H 1.08996 * 109.24268 * 49.55811 * 19 17 16 39 39 H 1.09001 * 109.38832 * 309.83134 * 20 19 17 40 40 H 1.08996 * 109.29949 * 190.08787 * 20 19 17 41 41 H 1.09001 * 109.55350 * 176.49799 * 21 20 19 42 42 H 1.08999 * 109.63176 * 56.24802 * 21 20 19 43 43 H 1.08998 * 109.55125 * 303.66643 * 25 17 16 44 44 H 1.09003 * 109.54869 * 63.95158 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0015 11 6 1.4807 -4.9871 0.0020 12 7 2.4327 -6.1005 0.0011 13 6 1.9836 -7.3712 0.0019 14 8 0.7882 -7.5935 0.0029 15 7 2.8595 -8.3955 0.0017 16 6 2.3712 -9.7768 0.0020 17 6 3.5613 -10.7384 -0.0055 18 1 4.2156 -10.5107 0.8361 19 6 4.3385 -10.5723 -1.3080 20 6 5.6628 -11.3276 -1.2443 21 6 5.4060 -12.8362 -1.2663 22 16 4.4771 -13.2998 0.2246 23 8 5.2478 -12.9527 1.3668 24 8 4.0146 -14.6351 0.0753 25 6 3.0531 -12.1764 0.1208 26 1 -0.4850 0.8399 -0.0004 27 1 0.6243 -2.5574 -0.8881 28 1 0.6249 -2.5563 0.8919 29 1 2.8729 -3.6038 0.8909 30 1 2.8715 -3.6045 -0.8890 31 1 0.8536 -5.0450 -0.8877 32 1 0.8544 -5.0447 0.8923 33 1 3.3864 -5.9232 0.0007 34 1 3.8132 -8.2182 -0.0032 35 1 1.7701 -9.9494 0.8947 36 1 1.7612 -9.9468 -0.8852 37 1 3.7426 -10.9608 -2.1338 38 1 4.5366 -9.5137 -1.4756 39 1 6.1864 -11.0632 -0.3255 40 1 6.2761 -11.0525 -2.1023 41 1 6.3574 -13.3679 -1.2833 42 1 4.8269 -13.0962 -2.1523 43 1 2.4472 -12.2714 1.0218 44 1 2.4522 -12.4289 -0.7529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259060446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -158.294926 kcal Electronic energy + Delta-G solvation = -24001.861756 eV Core-core repulsion = 20272.262799 eV Total energy + Delta-G solvation = -3729.598957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09356 -39.01387 -37.93609 -37.06125 -36.95663 -35.39354 -35.15556 -33.32702 -32.52217 -28.94142 -28.44327 -27.04236 -24.79586 -23.40068 -22.28118 -21.86981 -21.49636 -19.77989 -19.26954 -18.53048 -17.85822 -17.39816 -16.93934 -16.91199 -16.61701 -16.46474 -16.10821 -15.83293 -15.34625 -15.31969 -15.15923 -14.38134 -14.24248 -13.94509 -13.79319 -13.75501 -13.70699 -13.39537 -13.17913 -13.07502 -12.70076 -12.56347 -12.53105 -12.38158 -12.33142 -12.10742 -11.75005 -11.65067 -11.63731 -11.58066 -11.29974 -11.14450 -10.94253 -10.53091 -10.36818 -9.73478 -8.17703 -6.29201 -0.90780 1.42939 1.45957 1.53702 1.65393 1.84901 2.17229 2.43362 2.75662 2.97983 3.15896 3.34355 3.52827 3.60990 3.77636 3.80862 3.97077 4.16700 4.20055 4.26235 4.40995 4.42288 4.59007 4.65771 4.68880 4.80829 4.85706 4.98336 4.99260 5.03981 5.12892 5.19375 5.20536 5.34372 5.48543 5.51799 5.57135 5.73558 5.86314 6.04108 6.24439 6.88209 7.14762 7.40263 7.61117 8.94103 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037431 B = 0.001771 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.856497 B =15805.124326 C =16193.293000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.696 3.304 14 O -0.642 6.642 15 N -0.730 5.730 16 C 0.146 3.854 17 C -0.084 4.084 18 H 0.104 0.896 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.585 4.585 22 S 2.418 3.582 23 O -0.979 6.979 24 O -0.990 6.990 25 C -0.593 4.593 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.413 0.587 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.142 -27.736 -4.682 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.396 3.604 14 O -0.524 6.524 15 N -0.388 5.388 16 C 0.021 3.979 17 C -0.103 4.103 18 H 0.122 0.878 19 C -0.181 4.181 20 C -0.150 4.150 21 C -0.718 4.718 22 S 2.606 3.394 23 O -0.977 6.977 24 O -0.987 6.987 25 C -0.724 4.724 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.251 0.749 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 14.121 -28.526 -3.999 32.080 hybrid contribution 0.237 1.574 -0.324 1.624 sum 14.358 -26.952 -4.323 30.843 Atomic orbital electron populations 1.70106 1.07942 1.27822 1.51661 1.26040 0.95762 1.03601 0.94861 0.85463 0.78160 0.77910 0.79264 1.18961 1.21306 1.19058 1.21657 0.93774 0.91980 1.50446 0.91435 1.18949 0.94502 0.93015 0.95058 1.21581 0.98394 0.91644 1.02168 1.21053 0.91379 0.84716 1.00371 1.45011 1.10850 1.03568 1.79144 1.16178 0.85068 0.81444 0.77729 1.90902 1.16623 1.84864 1.60024 1.44920 1.09369 1.04628 1.79880 1.21228 0.95915 0.78387 1.02392 1.21107 0.96948 0.90883 1.01408 0.87789 1.21913 0.95872 1.03610 0.96672 1.21355 0.98471 0.89095 1.06118 1.30096 1.15429 1.06729 1.19500 1.07730 0.78213 0.75364 0.78121 1.93545 1.69812 1.85198 1.49107 1.93551 1.81910 1.35538 1.87686 1.30220 1.19325 1.08825 1.14003 0.92860 0.98941 0.99055 0.91379 0.91197 0.93515 0.93752 0.75072 0.74868 0.92436 0.91299 0.88747 0.88712 0.89652 0.87450 0.83534 0.82296 0.83933 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 13.29 21.45 0.28 -56.54 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.72 5.27 30.59 0.16 -3.56 16 11 C 0.15 5.16 5.67 86.38 0.49 5.65 16 12 N -0.73 -18.76 5.56 -478.54 -2.66 -21.42 16 13 C 0.70 18.99 8.57 179.06 1.53 20.52 16 14 O -0.64 -24.30 16.34 -3.99 -0.07 -24.37 16 15 N -0.73 -11.69 5.17 -478.53 -2.47 -14.16 16 16 C 0.15 1.98 5.06 86.38 0.44 2.42 16 17 C -0.08 -0.54 2.06 -10.92 -0.02 -0.56 16 18 H 0.10 0.63 8.01 -2.38 -0.02 0.61 16 19 C -0.14 -0.37 4.88 30.32 0.15 -0.22 16 20 C -0.11 -0.17 5.73 30.47 0.17 0.00 16 21 C -0.59 -1.20 6.35 71.99 0.46 -0.74 16 22 S 2.42 23.50 5.31 -56.49 -0.30 23.20 16 23 O -0.98 -17.47 17.94 -127.40 -2.29 -19.76 16 24 O -0.99 -18.24 18.10 -127.40 -2.31 -20.55 16 25 C -0.59 -3.31 5.62 71.99 0.40 -2.91 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 7.46 8.49 -92.71 -0.79 6.67 16 34 H 0.41 3.60 7.64 -92.70 -0.71 2.89 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.04 8.09 -2.39 -0.02 0.02 16 38 H 0.09 0.19 6.91 -2.39 -0.02 0.18 16 39 H 0.08 0.20 8.01 -2.39 -0.02 0.18 16 40 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.16 -0.39 8.14 -2.39 -0.02 -0.40 16 43 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -87.49 370.36 -3.64 -91.13 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -0.49 Total: 4.57 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.63 Total: -7.42 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.85 Total: -92.13 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -4.66 Total: -64.67 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.30 Total: 23.20 kcal Total: -87.49 -3.64 -91.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259060446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.163 kcal (2) G-P(sol) polarization free energy of solvation -87.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds