Wall clock time and date at job start Tue Mar 31 2020 13:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47289 * 321.18041 * 3 2 1 5 5 C 1.36936 * 119.99973 * 263.27763 * 4 3 2 6 6 H 1.08005 * 119.99653 * 201.49247 * 5 4 3 7 7 C 1.38993 * 119.99976 * 21.49075 * 5 4 3 8 8 N 1.31396 * 119.99935 * 19.05101 * 7 5 4 9 9 Si 1.86804 * 120.00158 * 199.05316 * 7 5 4 10 10 H 1.48493 * 109.47165 * 89.99767 * 9 7 5 11 11 H 1.48492 * 109.47174 * 210.00375 * 9 7 5 12 12 H 1.48505 * 109.46648 * 329.99928 * 9 7 5 13 13 C 1.34778 * 120.00346 * 83.27814 * 4 3 2 14 14 O 1.21644 * 120.00622 * 176.30385 * 13 4 3 15 15 C 1.47200 * 119.99883 * 356.29923 * 13 4 3 16 16 C 1.38069 * 120.88459 * 56.38590 * 15 13 4 17 17 N 1.34362 * 120.35650 * 180.33432 * 16 15 13 18 18 C 1.46499 * 118.80378 * 179.67969 * 17 16 15 19 19 C 1.52998 * 109.47201 * 93.25210 * 18 17 16 20 20 O 1.42900 * 109.47077 * 179.97438 * 19 18 17 21 21 C 1.42906 * 113.99729 * 180.02562 * 20 19 18 22 22 C 1.35567 * 122.38979 * 359.65337 * 17 16 15 23 23 C 1.50698 * 119.09366 * 180.02562 * 22 17 16 24 24 C 1.34878 * 121.81649 * 0.02908 * 22 17 16 25 25 C 1.41650 * 119.34751 * 359.97438 * 24 22 17 26 26 O 1.22090 * 121.07147 * 180.02562 * 25 24 22 27 27 H 4.40635 * 5.51413 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47248 * 201.17965 * 3 2 1 29 29 H 1.09005 * 109.47081 * 81.18357 * 3 2 1 30 30 H 0.97002 * 119.99911 * 179.97438 * 8 7 5 31 31 H 1.07997 * 119.82059 * 0.02562 * 16 15 13 32 32 H 1.09003 * 109.46918 * 213.25289 * 18 17 16 33 33 H 1.09006 * 109.47137 * 333.25194 * 18 17 16 34 34 H 1.08998 * 109.47602 * 300.00201 * 19 18 17 35 35 H 1.09006 * 109.47088 * 59.99954 * 19 18 17 36 36 H 1.08996 * 109.47246 * 59.99938 * 21 20 19 37 37 H 1.08995 * 109.46628 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47097 * 299.99899 * 21 20 19 39 39 H 1.09002 * 109.47631 * 267.18801 * 23 22 17 40 40 H 1.09003 * 109.46796 * 27.18609 * 23 22 17 41 41 H 1.09001 * 109.47565 * 147.18617 * 23 22 17 42 42 H 1.07997 * 120.33263 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0752 0.8658 5 6 3.4938 -0.8036 2.1591 6 1 4.1598 -1.4709 2.6860 7 6 3.0011 0.3307 2.7935 8 7 1.9308 0.9324 2.3257 9 14 3.8606 0.9998 4.3111 10 1 4.8959 1.9821 3.9009 11 1 2.8663 1.6663 5.1897 12 1 4.5030 -0.1174 5.0490 13 6 3.2312 -2.3323 0.3895 14 8 3.7000 -3.2125 1.0862 15 6 2.7692 -2.6404 -0.9737 16 6 3.2737 -1.9596 -2.0638 17 7 2.8396 -2.2448 -3.3029 18 6 3.3929 -1.4965 -4.4344 19 6 4.5819 -2.2614 -5.0191 20 8 5.1212 -1.5318 -6.1232 21 6 6.2421 -2.1633 -6.7452 22 6 1.9085 -3.2001 -3.5442 23 6 1.4754 -3.4592 -4.9642 24 6 1.3589 -3.9251 -2.5484 25 6 1.7623 -3.6864 -1.2117 26 8 1.2858 -4.3245 -0.2863 27 1 -1.0498 -0.0001 0.0004 28 1 3.0089 0.9590 0.3713 29 1 3.0094 -0.1567 -1.0156 30 1 1.5867 1.7238 2.7687 31 1 4.0178 -1.1902 -1.9192 32 1 2.6263 -1.3760 -5.1999 33 1 3.7240 -0.5153 -4.0940 34 1 5.3484 -2.3820 -4.2537 35 1 4.2508 -3.2426 -5.3595 36 1 5.9452 -3.1424 -7.1210 37 1 6.5930 -1.5472 -7.5729 38 1 7.0434 -2.2818 -6.0158 39 1 0.5954 -2.8574 -5.1913 40 1 2.2838 -3.1921 -5.6450 41 1 1.2340 -4.5154 -5.0835 42 1 0.6186 -4.6801 -2.7680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261513748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:04 Heat of formation + Delta-G solvation = 6.672114 kcal Electronic energy + Delta-G solvation = -27111.153220 eV Core-core repulsion = 23253.263819 eV Total energy + Delta-G solvation = -3857.889401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10862 -38.69436 -38.10570 -37.28662 -34.97291 -33.35752 -32.98632 -31.88492 -31.09414 -29.36766 -28.04863 -26.58678 -26.35493 -24.90616 -23.61063 -23.41530 -21.46084 -19.60980 -17.89938 -17.62573 -17.44228 -16.72374 -16.47286 -16.26235 -16.05857 -15.83400 -15.20193 -14.69437 -14.51608 -14.13435 -14.05563 -13.89281 -13.64877 -13.23182 -13.08482 -13.02876 -12.80793 -12.52293 -12.27858 -12.09310 -11.98643 -11.85791 -11.63849 -11.54188 -11.44186 -10.99489 -10.44655 -10.31720 -10.18179 -9.35659 -9.25449 -9.12743 -8.96684 -8.80150 -8.33565 -7.78660 -7.52856 -6.27308 -3.81567 1.39050 1.58384 2.32317 3.19146 3.28595 3.33983 3.42282 3.71272 3.91618 4.12681 4.20629 4.24401 4.26321 4.31930 4.49416 4.70280 4.79590 4.86063 4.89479 4.93333 4.97559 5.06341 5.13531 5.16518 5.22479 5.25436 5.38404 5.49832 5.55991 5.60922 5.84606 6.05734 6.10798 6.28607 6.57156 6.67431 6.76006 6.85684 7.07716 7.09882 7.60905 8.13186 8.49374 8.62420 8.92340 9.18999 9.38964 9.98862 10.73081 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004144 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.880804 B = 6754.392814 C = 7438.331501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.113 4.113 3 C 0.233 3.767 4 N -0.437 5.437 5 C -0.310 4.310 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.861 5.861 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.515 3.485 14 O -0.562 6.562 15 C -0.237 4.237 16 C 0.122 3.878 17 N -0.468 5.468 18 C 0.090 3.910 19 C 0.040 3.960 20 O -0.388 6.388 21 C 0.033 3.967 22 C 0.158 3.842 23 C -0.128 4.128 24 C -0.279 4.279 25 C 0.410 3.590 26 O -0.496 6.496 27 H 0.197 0.803 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.167 0.833 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -0.157 -22.545 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.114 4.114 3 C 0.109 3.891 4 N -0.156 5.156 5 C -0.437 4.437 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.498 5.498 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.303 3.697 14 O -0.444 6.444 15 C -0.248 4.248 16 C -0.004 4.004 17 N -0.158 5.158 18 C -0.033 4.033 19 C -0.038 4.038 20 O -0.306 6.306 21 C -0.064 4.064 22 C 0.052 3.948 23 C -0.185 4.185 24 C -0.304 4.304 25 C 0.297 3.703 26 O -0.378 6.378 27 H 0.214 0.786 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.564 -0.481 -21.809 22.104 hybrid contribution 0.076 0.349 0.846 0.919 sum 3.640 -0.132 -20.963 21.277 Atomic orbital electron populations 1.24215 0.95356 1.02958 1.05117 1.23059 0.94290 0.97975 0.96113 1.18378 0.84604 0.93936 0.92136 1.43640 1.55898 1.04527 1.11486 1.19697 1.26398 1.08758 0.88863 0.87718 1.25355 0.95019 0.98010 0.99068 1.70071 1.18266 1.20328 1.41134 0.85952 0.78862 0.79077 0.81028 1.20369 1.21088 1.19323 1.17286 0.84166 0.82704 0.85583 1.90637 1.48522 1.45652 1.59607 1.22852 1.04797 1.02833 0.94291 1.22108 0.97839 0.98102 0.82366 1.42314 1.34724 1.32323 1.06407 1.21889 0.96590 0.95879 0.88899 1.22956 0.96008 0.95187 0.89630 1.87805 1.48083 1.48099 1.46611 1.22792 0.87973 0.98003 0.97619 1.20133 0.89133 0.88418 0.97147 1.21197 1.02673 1.04424 0.90252 1.22109 1.08140 1.06710 0.93453 1.18216 0.81257 0.82038 0.88792 1.90765 1.53280 1.47151 1.46626 0.78581 0.87503 0.92501 0.92145 0.81565 0.87644 0.87466 0.91975 0.92256 0.93832 0.89211 0.93642 0.89333 0.90522 0.89126 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.76 19.25 29.55 0.57 -5.19 16 2 C -0.11 -2.66 11.11 -37.12 -0.41 -3.07 16 3 C 0.23 5.19 4.87 -6.83 -0.03 5.16 16 4 N -0.44 -11.52 2.59 -119.24 -0.31 -11.83 16 5 C -0.31 -8.80 9.28 -14.99 -0.14 -8.94 16 6 H 0.11 3.12 7.40 -52.48 -0.39 2.73 16 7 C 0.03 0.80 4.89 -17.46 -0.09 0.71 16 8 N -0.86 -23.15 9.51 55.50 0.53 -22.63 16 9 Si 0.92 20.84 29.59 -169.99 -5.03 15.81 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.51 13.83 6.82 -12.62 -0.09 13.75 16 14 O -0.56 -17.47 16.71 5.24 0.09 -17.38 16 15 C -0.24 -5.13 4.96 -102.71 -0.51 -5.64 16 16 C 0.12 1.87 8.08 -16.51 -0.13 1.73 16 17 N -0.47 -5.38 2.58 -112.36 -0.29 -5.67 16 18 C 0.09 0.68 5.25 -4.04 -0.02 0.66 16 19 C 0.04 0.29 5.97 37.16 0.22 0.51 16 20 O -0.39 -3.03 10.70 -35.23 -0.38 -3.41 16 21 C 0.03 0.18 11.01 101.05 1.11 1.29 16 22 C 0.16 1.85 6.61 -82.14 -0.54 1.31 16 23 C -0.13 -0.86 9.06 36.00 0.33 -0.53 16 24 C -0.28 -4.44 9.58 -39.47 -0.38 -4.82 16 25 C 0.41 9.15 6.97 -34.67 -0.24 8.91 16 26 O -0.50 -13.59 17.49 4.84 0.08 -13.50 16 27 H 0.20 3.68 7.80 -54.10 -0.42 3.26 16 28 H 0.11 2.45 6.60 -51.93 -0.34 2.11 16 29 H 0.06 1.02 4.33 -51.93 -0.22 0.79 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.17 2.16 6.69 -52.49 -0.35 1.81 16 32 H 0.11 0.61 6.51 -51.93 -0.34 0.27 16 33 H 0.11 0.73 7.90 -51.93 -0.41 0.32 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.39 7.01 -51.93 -0.36 0.03 16 36 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.39 5.03 -51.93 -0.26 0.13 16 41 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -39.91 358.66 -5.45 -45.36 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.19 Total: 2.00 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.35 Total: 5.84 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.07 Total: -40.13 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.20 Total: -34.29 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.91 -5.45 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261513748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.034 kcal (2) G-P(sol) polarization free energy of solvation -39.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds