Wall clock time and date at job start Tue Mar 31 2020 13:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47289 * 321.18041 * 3 2 1 5 5 C 1.36936 * 119.99973 * 263.27763 * 4 3 2 6 6 H 1.08005 * 119.99653 * 201.49247 * 5 4 3 7 7 C 1.38993 * 119.99976 * 21.49075 * 5 4 3 8 8 N 1.31396 * 119.99935 * 19.05101 * 7 5 4 9 9 Si 1.86804 * 120.00158 * 199.05316 * 7 5 4 10 10 H 1.48493 * 109.47165 * 89.99767 * 9 7 5 11 11 H 1.48492 * 109.47174 * 210.00375 * 9 7 5 12 12 H 1.48505 * 109.46648 * 329.99928 * 9 7 5 13 13 C 1.34778 * 120.00346 * 83.27814 * 4 3 2 14 14 O 1.21644 * 120.00622 * 176.30385 * 13 4 3 15 15 C 1.47200 * 119.99883 * 356.29923 * 13 4 3 16 16 C 1.38069 * 120.88459 * 56.38590 * 15 13 4 17 17 N 1.34362 * 120.35650 * 180.33432 * 16 15 13 18 18 C 1.46499 * 118.80378 * 179.67969 * 17 16 15 19 19 C 1.52998 * 109.47201 * 93.25210 * 18 17 16 20 20 O 1.42900 * 109.47077 * 179.97438 * 19 18 17 21 21 C 1.42906 * 113.99729 * 180.02562 * 20 19 18 22 22 C 1.35567 * 122.38979 * 359.65337 * 17 16 15 23 23 C 1.50698 * 119.09366 * 180.02562 * 22 17 16 24 24 C 1.34878 * 121.81649 * 0.02908 * 22 17 16 25 25 C 1.41650 * 119.34751 * 359.97438 * 24 22 17 26 26 O 1.22090 * 121.07147 * 180.02562 * 25 24 22 27 27 H 4.40635 * 5.51413 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47248 * 201.17965 * 3 2 1 29 29 H 1.09005 * 109.47081 * 81.18357 * 3 2 1 30 30 H 0.97002 * 119.99911 * 179.97438 * 8 7 5 31 31 H 1.07997 * 119.82059 * 0.02562 * 16 15 13 32 32 H 1.09003 * 109.46918 * 213.25289 * 18 17 16 33 33 H 1.09006 * 109.47137 * 333.25194 * 18 17 16 34 34 H 1.08998 * 109.47602 * 300.00201 * 19 18 17 35 35 H 1.09006 * 109.47088 * 59.99954 * 19 18 17 36 36 H 1.08996 * 109.47246 * 59.99938 * 21 20 19 37 37 H 1.08995 * 109.46628 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47097 * 299.99899 * 21 20 19 39 39 H 1.09002 * 109.47631 * 267.18801 * 23 22 17 40 40 H 1.09003 * 109.46796 * 27.18609 * 23 22 17 41 41 H 1.09001 * 109.47565 * 147.18617 * 23 22 17 42 42 H 1.07997 * 120.33263 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0752 0.8658 5 6 3.4938 -0.8036 2.1591 6 1 4.1598 -1.4709 2.6860 7 6 3.0011 0.3307 2.7935 8 7 1.9308 0.9324 2.3257 9 14 3.8606 0.9998 4.3111 10 1 4.8959 1.9821 3.9009 11 1 2.8663 1.6663 5.1897 12 1 4.5030 -0.1174 5.0490 13 6 3.2312 -2.3323 0.3895 14 8 3.7000 -3.2125 1.0862 15 6 2.7692 -2.6404 -0.9737 16 6 3.2737 -1.9596 -2.0638 17 7 2.8396 -2.2448 -3.3029 18 6 3.3929 -1.4965 -4.4344 19 6 4.5819 -2.2614 -5.0191 20 8 5.1212 -1.5318 -6.1232 21 6 6.2421 -2.1633 -6.7452 22 6 1.9085 -3.2001 -3.5442 23 6 1.4754 -3.4592 -4.9642 24 6 1.3589 -3.9251 -2.5484 25 6 1.7623 -3.6864 -1.2117 26 8 1.2858 -4.3245 -0.2863 27 1 -1.0498 -0.0001 0.0004 28 1 3.0089 0.9590 0.3713 29 1 3.0094 -0.1567 -1.0156 30 1 1.5867 1.7238 2.7687 31 1 4.0178 -1.1902 -1.9192 32 1 2.6263 -1.3760 -5.1999 33 1 3.7240 -0.5153 -4.0940 34 1 5.3484 -2.3820 -4.2537 35 1 4.2508 -3.2426 -5.3595 36 1 5.9452 -3.1424 -7.1210 37 1 6.5930 -1.5472 -7.5729 38 1 7.0434 -2.2818 -6.0158 39 1 0.5954 -2.8574 -5.1913 40 1 2.2838 -3.1921 -5.6450 41 1 1.2340 -4.5154 -5.0835 42 1 0.6186 -4.6801 -2.7680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261513748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:04 Heat of formation + Delta-G solvation = -23.106219 kcal Electronic energy + Delta-G solvation = -27112.444506 eV Core-core repulsion = 23253.263819 eV Total energy + Delta-G solvation = -3859.180686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34620 -40.36504 -39.18092 -38.54780 -37.01973 -34.61154 -34.23895 -33.60283 -33.00077 -30.36942 -29.14143 -28.16538 -27.14320 -26.68079 -24.95390 -24.26958 -22.87118 -21.15195 -19.74454 -19.00575 -18.76415 -18.18813 -17.63359 -17.36026 -17.07947 -16.88459 -16.66134 -16.12056 -16.06549 -15.57016 -15.46241 -15.35534 -14.67305 -14.57446 -14.47020 -14.17065 -14.04995 -13.80197 -13.65471 -13.51799 -13.49177 -12.86139 -12.79212 -12.54583 -12.49238 -12.40779 -12.18707 -12.10556 -11.23073 -11.18853 -10.77856 -10.67730 -10.64925 -10.38454 -10.19809 -9.82075 -9.01077 -8.32354 -5.96859 0.03056 0.29194 1.28914 1.38203 1.41309 1.53730 1.83360 2.14966 2.31155 2.38930 2.62524 2.83183 3.01088 3.18689 3.34469 3.60564 3.68561 3.76102 3.89022 3.92196 4.08397 4.25105 4.32947 4.42439 4.51698 4.53737 4.55018 4.64532 4.68723 4.75946 4.78290 4.88719 4.92073 4.92971 5.13405 5.35574 5.37893 5.45823 5.72227 5.84435 6.06559 6.10413 6.45571 7.10481 7.12232 7.13739 7.36549 7.97171 8.66102 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004144 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.880804 B = 6754.392814 C = 7438.331501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.146 4.146 3 C 0.236 3.764 4 N -0.445 5.445 5 C -0.355 4.355 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.991 3.009 10 H -0.254 1.254 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.504 3.496 14 O -0.629 6.629 15 C -0.301 4.301 16 C 0.177 3.823 17 N -0.449 5.449 18 C 0.080 3.920 19 C 0.040 3.960 20 O -0.398 6.398 21 C 0.026 3.974 22 C 0.195 3.805 23 C -0.126 4.126 24 C -0.305 4.305 25 C 0.385 3.615 26 O -0.588 6.588 27 H 0.226 0.774 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.274 0.726 31 H 0.197 0.803 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 2.154 -27.224 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.147 4.147 3 C 0.114 3.886 4 N -0.162 5.162 5 C -0.482 4.482 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.814 3.186 10 H -0.179 1.179 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.294 3.706 14 O -0.515 6.515 15 C -0.312 4.312 16 C 0.047 3.953 17 N -0.135 5.135 18 C -0.040 4.040 19 C -0.037 4.037 20 O -0.317 6.317 21 C -0.070 4.070 22 C 0.087 3.913 23 C -0.182 4.182 24 C -0.328 4.328 25 C 0.280 3.720 26 O -0.478 6.478 27 H 0.243 0.757 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.214 0.786 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.667 1.897 -26.614 26.932 hybrid contribution 0.099 -0.284 2.013 2.035 sum 3.766 1.613 -24.601 24.940 Atomic orbital electron populations 1.25050 0.96429 1.01893 1.04084 1.23499 0.95153 0.98948 0.97117 1.18534 0.84359 0.92220 0.93498 1.43807 1.55588 1.05533 1.11315 1.19600 1.28160 1.09879 0.90608 0.91058 1.26084 0.95168 0.97146 1.01649 1.70165 1.18376 1.20233 1.42071 0.84991 0.78219 0.78176 0.77216 1.17871 1.20298 1.20709 1.18090 0.82831 0.82085 0.87571 1.90551 1.51259 1.47507 1.62218 1.22305 1.08751 1.06786 0.93318 1.22289 0.95115 0.95473 0.82417 1.42847 1.33059 1.31210 1.06380 1.22359 0.97904 0.95891 0.87811 1.22887 0.95530 0.95631 0.89677 1.87777 1.48749 1.48629 1.46508 1.22961 0.87365 0.98818 0.97864 1.20860 0.86138 0.85337 0.99001 1.21446 1.04484 1.06247 0.86048 1.21971 1.10355 1.09299 0.91208 1.19014 0.80939 0.81389 0.90645 1.90703 1.57092 1.50772 1.49260 0.75717 0.88334 0.88188 0.91646 0.78627 0.84102 0.85691 0.92914 0.90960 0.92733 0.88005 0.93800 0.86702 0.87708 0.87428 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.33 19.25 74.32 1.43 -9.90 16 2 C -0.15 -6.87 11.11 31.13 0.35 -6.53 16 3 C 0.24 10.59 4.87 84.57 0.41 11.01 16 4 N -0.44 -24.70 2.59 -649.40 -1.68 -26.38 16 5 C -0.36 -21.40 9.28 84.08 0.78 -20.62 16 6 H 0.07 4.65 7.40 -2.91 -0.02 4.63 16 7 C 0.00 0.17 4.89 84.94 0.42 0.59 16 8 N -0.87 -47.40 9.51 21.67 0.21 -47.19 16 9 Si 0.99 43.64 29.59 68.60 2.03 45.67 16 10 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 C 0.50 29.06 6.82 86.60 0.59 29.65 16 14 O -0.63 -42.90 16.71 -4.17 -0.07 -42.97 16 15 C -0.30 -13.54 4.96 -18.63 -0.09 -13.63 16 16 C 0.18 5.09 8.08 84.27 0.68 5.77 16 17 N -0.45 -8.41 2.58 -509.40 -1.31 -9.72 16 18 C 0.08 0.72 5.25 86.38 0.45 1.17 16 19 C 0.04 0.38 5.97 71.98 0.43 0.81 16 20 O -0.40 -4.30 10.70 -148.98 -1.59 -5.89 16 21 C 0.03 0.19 11.01 113.37 1.25 1.44 16 22 C 0.20 3.80 6.61 41.21 0.27 4.07 16 23 C -0.13 -0.87 9.06 71.24 0.65 -0.22 16 24 C -0.30 -9.51 9.58 22.34 0.21 -9.30 16 25 C 0.39 18.24 6.97 25.45 0.18 18.42 16 26 O -0.59 -35.47 17.49 -5.61 -0.10 -35.57 16 27 H 0.23 8.13 7.80 -4.43 -0.03 8.09 16 28 H 0.10 4.54 6.60 -2.39 -0.02 4.52 16 29 H 0.10 3.41 4.33 -2.38 -0.01 3.40 16 30 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.20 4.45 6.69 -2.91 -0.02 4.43 16 32 H 0.14 0.50 6.51 -2.39 -0.02 0.48 16 33 H 0.12 0.87 7.90 -2.38 -0.02 0.85 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.53 7.01 -2.38 -0.02 0.51 16 36 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.24 5.03 -2.39 -0.01 0.23 16 41 H 0.11 0.58 8.08 -2.39 -0.02 0.56 16 42 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -101.38 358.66 6.53 -94.85 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.05 Total: 14.47 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 8.00 Total: 12.72 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.79 Total: -83.29 kcal Atomic # 8 Polarization: -82.66 SS G_CDS: -1.76 Total: -84.43 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -101.38 6.53 -94.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261513748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.748 kcal (2) G-P(sol) polarization free energy of solvation -101.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds