Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86797 * 119.99558 * 2 1 4 4 H 1.48496 * 109.47209 * 239.99681 * 3 2 1 5 5 H 1.48500 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47223 * 119.99834 * 3 2 1 7 7 C 1.38650 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99527 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00006 * 185.08050 * 9 7 2 11 11 C 1.38903 * 120.07104 * 354.76204 * 10 9 7 12 12 C 1.38073 * 119.92843 * 180.29700 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.43224 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47566 * 90.00210 * 15 14 13 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00291 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.87115 * 40.44185 * 19 17 16 21 21 C 1.54325 * 109.88570 * 279.26702 * 19 17 16 22 22 C 1.55154 * 102.94158 * 218.38964 * 21 19 17 23 23 C 1.54905 * 101.58308 * 35.49780 * 22 21 19 24 24 N 1.47021 * 109.88549 * 161.45092 * 19 17 16 25 25 C 1.34769 * 125.65167 * 298.40089 * 24 19 17 26 26 O 1.21280 * 120.00039 * 179.97438 * 25 24 19 27 27 C 1.38125 * 120.06644 * 0.02562 * 14 13 12 28 28 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03558 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.96595 * 179.70240 * 12 11 10 31 31 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 32 32 H 1.09008 * 109.47139 * 209.99873 * 15 14 13 33 33 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 34 34 H 0.96996 * 119.99904 * 359.97438 * 16 15 14 35 35 H 1.09006 * 110.71573 * 336.74795 * 21 19 17 36 36 H 1.09003 * 110.72099 * 100.02174 * 21 19 17 37 37 H 1.08999 * 111.00261 * 277.42126 * 22 21 19 38 38 H 1.09001 * 111.00697 * 153.57510 * 22 21 19 39 39 H 1.09004 * 110.36629 * 204.15252 * 23 22 21 40 40 H 1.09003 * 110.45982 * 81.88124 * 23 22 21 41 41 H 1.07999 * 120.00201 * 359.97438 * 25 24 19 42 42 H 1.07996 * 120.03683 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0016 10 6 2.0702 -3.5044 0.1092 11 6 3.4577 -3.4386 0.1023 12 6 4.2027 -4.5965 0.2058 13 6 3.5690 -5.8199 0.3279 14 6 2.1879 -5.8882 0.3413 15 6 1.5016 -7.2230 0.4751 16 7 1.2857 -7.5212 1.8931 17 6 0.6829 -8.6708 2.2558 18 8 0.3195 -9.4586 1.4083 19 6 0.4613 -8.9778 3.7145 20 1 0.1518 -8.0745 4.2403 21 6 1.7598 -9.5326 4.3372 22 6 1.2407 -10.6327 5.3004 23 6 0.0320 -11.1930 4.5101 24 7 -0.5693 -10.0166 3.8559 25 6 -1.8512 -9.9114 3.4534 26 8 -2.6174 -10.8364 3.6212 27 6 1.4369 -4.7341 0.2320 28 1 -0.4850 0.8400 -0.0004 29 1 3.9531 -2.4834 0.0109 30 1 5.2815 -4.5465 0.1957 31 1 4.1540 -6.7237 0.4135 32 1 0.5412 -7.1910 -0.0397 33 1 2.1259 -7.9987 0.0316 34 1 1.5766 -6.8913 2.5709 35 1 2.4020 -9.9641 3.5693 36 1 2.2863 -8.7539 4.8890 37 1 0.9214 -10.2020 6.2494 38 1 1.9960 -11.4028 5.4572 39 1 -0.6835 -11.6563 5.1895 40 1 0.3659 -11.9132 3.7632 41 1 -2.1961 -9.0033 2.9813 42 1 0.3584 -4.7880 0.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261691845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = -67.439337 kcal Electronic energy + Delta-G solvation = -25528.490198 eV Core-core repulsion = 21667.387084 eV Total energy + Delta-G solvation = -3861.103115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80224 -39.36672 -38.82976 -37.33469 -36.79095 -34.66098 -32.40391 -31.96127 -31.26124 -29.83233 -29.10654 -26.16089 -25.29061 -24.59585 -22.37493 -21.80248 -21.30667 -20.89545 -20.07283 -18.23569 -17.70300 -17.55700 -17.01689 -16.16435 -15.80856 -15.45843 -15.19635 -15.05001 -14.62450 -14.47346 -14.37909 -13.91698 -13.77138 -13.65167 -13.42034 -13.13939 -12.83713 -12.70519 -12.47863 -12.35594 -11.99716 -11.73108 -11.67292 -11.46772 -11.34141 -10.99564 -10.90709 -10.78216 -10.54210 -10.18634 -10.13077 -9.48664 -9.15728 -8.98090 -8.93638 -8.32018 -7.40577 -6.54928 -4.14806 1.79002 2.18580 2.33915 2.46789 2.75839 3.06656 3.06722 3.10666 3.28397 3.87561 3.99186 4.10347 4.36695 4.47322 4.63804 4.71711 4.80017 4.85291 4.97686 5.00921 5.17472 5.28137 5.38290 5.40882 5.45385 5.48577 5.64350 5.70562 5.75614 5.80964 5.89674 5.99841 6.17119 6.30045 6.47248 6.73531 6.91869 7.09667 7.11546 7.19707 7.28385 7.40493 7.63283 7.86472 7.88783 8.04158 8.90183 9.57874 10.62557 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002449 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.941600 B =11429.150956 C =12016.160729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.196 4.196 14 C -0.074 4.074 15 C 0.168 3.832 16 N -0.714 5.714 17 C 0.496 3.504 18 O -0.532 6.532 19 C 0.112 3.888 20 H 0.105 0.895 21 C -0.120 4.120 22 C -0.131 4.131 23 C 0.101 3.899 24 N -0.607 5.607 25 C 0.522 3.478 26 O -0.552 6.552 27 C -0.171 4.171 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -14.527 9.898 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.075 4.075 15 C 0.045 3.955 16 N -0.366 5.366 17 C 0.280 3.720 18 O -0.409 6.409 19 C 0.004 3.996 20 H 0.123 0.877 21 C -0.158 4.158 22 C -0.169 4.169 23 C -0.022 4.022 24 N -0.344 5.344 25 C 0.293 3.707 26 O -0.426 6.426 27 C -0.191 4.191 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.191 -15.365 9.290 18.690 hybrid contribution 0.825 1.409 0.083 1.635 sum 6.016 -13.956 9.373 17.855 Atomic orbital electron populations 1.70023 1.05988 1.27977 1.45460 1.25300 0.95849 0.98884 0.96372 0.85775 0.78730 0.79689 0.79228 1.19451 1.20209 1.19453 1.21276 0.91779 0.80740 1.53278 0.89058 1.83981 1.34287 1.11437 1.78098 1.19327 0.90261 0.88083 0.92692 1.21251 0.93846 0.99121 1.10252 1.20748 0.98593 0.92245 0.97795 1.20464 0.93295 0.97116 1.10645 1.19235 0.93490 0.92730 1.02021 1.20181 1.00264 0.93897 0.81128 1.46152 1.60371 1.20853 1.09249 1.20951 0.78241 0.81654 0.91188 1.90749 1.50212 1.47566 1.52326 1.21667 0.90817 0.93672 0.93424 0.87729 1.22612 0.94533 0.99464 0.99174 1.22800 0.97401 0.98420 0.98278 1.22254 0.94991 0.88714 0.96197 1.48751 1.09441 1.16274 1.59893 1.22266 0.79137 0.92200 0.77092 1.90700 1.53924 1.42697 1.55322 1.20080 0.99417 0.89824 1.09817 0.91824 0.85448 0.87270 0.87529 0.90746 0.90870 0.76035 0.89813 0.88654 0.90085 0.89323 0.90003 0.91215 0.85292 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 13.67 55.48 0.76 -23.57 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.39 -10.48 9.49 30.88 0.29 -10.18 16 8 H 0.09 2.22 5.20 -52.49 -0.27 1.95 16 9 O -0.17 -4.71 9.76 0.06 0.00 -4.71 16 10 C 0.15 3.34 6.65 -39.10 -0.26 3.08 16 11 C -0.23 -4.46 9.17 -39.40 -0.36 -4.82 16 12 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 13 C -0.20 -2.92 9.70 -39.53 -0.38 -3.30 16 14 C -0.07 -1.14 5.25 -104.65 -0.55 -1.69 16 15 C 0.17 2.19 5.80 -5.20 -0.03 2.16 16 16 N -0.71 -7.67 5.55 -61.48 -0.34 -8.01 16 17 C 0.50 5.59 6.72 -10.99 -0.07 5.51 16 18 O -0.53 -8.24 16.16 5.55 0.09 -8.15 16 19 C 0.11 0.91 3.51 -68.11 -0.24 0.67 16 20 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.12 -0.69 6.47 -24.90 -0.16 -0.85 16 22 C -0.13 -0.69 7.08 -24.59 -0.17 -0.86 16 23 C 0.10 0.86 6.91 -2.53 -0.02 0.85 16 24 N -0.61 -6.22 2.75 -169.37 -0.47 -6.69 16 25 C 0.52 6.46 11.52 54.05 0.62 7.09 16 26 O -0.55 -8.95 17.43 5.56 0.10 -8.86 16 27 C -0.17 -3.24 9.65 -39.39 -0.38 -3.62 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.13 2.54 5.64 -52.49 -0.30 2.25 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.07 1.04 8.08 -51.92 -0.42 0.62 16 33 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.40 3.65 8.46 -40.82 -0.35 3.30 16 35 H 0.08 0.55 7.84 -51.93 -0.41 0.15 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -34.06 362.23 -7.15 -41.21 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.52 Total: 5.34 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.21 Total: -6.62 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.05 Total: -38.27 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.19 Total: -21.72 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.06 -7.15 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261691845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.225 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds