Wall clock time and date at job start Tue Mar 31 2020 12:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86797 * 119.99558 * 2 1 4 4 H 1.48496 * 109.47209 * 239.99681 * 3 2 1 5 5 H 1.48500 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47223 * 119.99834 * 3 2 1 7 7 C 1.38650 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99527 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00006 * 185.08050 * 9 7 2 11 11 C 1.38903 * 120.07104 * 354.76204 * 10 9 7 12 12 C 1.38073 * 119.92843 * 180.29700 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.43224 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47566 * 90.00210 * 15 14 13 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00291 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.87115 * 40.44185 * 19 17 16 21 21 C 1.54325 * 109.88570 * 279.26702 * 19 17 16 22 22 C 1.55154 * 102.94158 * 218.38964 * 21 19 17 23 23 C 1.54905 * 101.58308 * 35.49780 * 22 21 19 24 24 N 1.47021 * 109.88549 * 161.45092 * 19 17 16 25 25 C 1.34769 * 125.65167 * 298.40089 * 24 19 17 26 26 O 1.21280 * 120.00039 * 179.97438 * 25 24 19 27 27 C 1.38125 * 120.06644 * 0.02562 * 14 13 12 28 28 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03558 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.96595 * 179.70240 * 12 11 10 31 31 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 32 32 H 1.09008 * 109.47139 * 209.99873 * 15 14 13 33 33 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 34 34 H 0.96996 * 119.99904 * 359.97438 * 16 15 14 35 35 H 1.09006 * 110.71573 * 336.74795 * 21 19 17 36 36 H 1.09003 * 110.72099 * 100.02174 * 21 19 17 37 37 H 1.08999 * 111.00261 * 277.42126 * 22 21 19 38 38 H 1.09001 * 111.00697 * 153.57510 * 22 21 19 39 39 H 1.09004 * 110.36629 * 204.15252 * 23 22 21 40 40 H 1.09003 * 110.45982 * 81.88124 * 23 22 21 41 41 H 1.07999 * 120.00201 * 359.97438 * 25 24 19 42 42 H 1.07996 * 120.03683 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0016 10 6 2.0702 -3.5044 0.1092 11 6 3.4577 -3.4386 0.1023 12 6 4.2027 -4.5965 0.2058 13 6 3.5690 -5.8199 0.3279 14 6 2.1879 -5.8882 0.3413 15 6 1.5016 -7.2230 0.4751 16 7 1.2857 -7.5212 1.8931 17 6 0.6829 -8.6708 2.2558 18 8 0.3195 -9.4586 1.4083 19 6 0.4613 -8.9778 3.7145 20 1 0.1518 -8.0745 4.2403 21 6 1.7598 -9.5326 4.3372 22 6 1.2407 -10.6327 5.3004 23 6 0.0320 -11.1930 4.5101 24 7 -0.5693 -10.0166 3.8559 25 6 -1.8512 -9.9114 3.4534 26 8 -2.6174 -10.8364 3.6212 27 6 1.4369 -4.7341 0.2320 28 1 -0.4850 0.8400 -0.0004 29 1 3.9531 -2.4834 0.0109 30 1 5.2815 -4.5465 0.1957 31 1 4.1540 -6.7237 0.4135 32 1 0.5412 -7.1910 -0.0397 33 1 2.1259 -7.9987 0.0316 34 1 1.5766 -6.8913 2.5709 35 1 2.4020 -9.9641 3.5693 36 1 2.2863 -8.7539 4.8890 37 1 0.9214 -10.2020 6.2494 38 1 1.9960 -11.4028 5.4572 39 1 -0.6835 -11.6563 5.1895 40 1 0.3659 -11.9132 3.7632 41 1 -2.1961 -9.0033 2.9813 42 1 0.3584 -4.7880 0.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261691845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:49 Heat of formation + Delta-G solvation = -91.671600 kcal Electronic energy + Delta-G solvation = -25529.540988 eV Core-core repulsion = 21667.387084 eV Total energy + Delta-G solvation = -3862.153904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66479 -40.82386 -39.94762 -38.53629 -37.99758 -35.80276 -34.27459 -32.71192 -32.41028 -30.95758 -30.35115 -27.57699 -26.83855 -25.46286 -23.29151 -23.10107 -22.38951 -21.98543 -20.97820 -19.64162 -18.99606 -18.47018 -18.42178 -17.06248 -16.83501 -16.70700 -16.57111 -16.14460 -15.98047 -15.89745 -15.49293 -15.24629 -15.04983 -14.60941 -14.37560 -14.20838 -13.95556 -13.88355 -13.68011 -13.37033 -13.35266 -13.00268 -12.72582 -12.53082 -12.35796 -12.24648 -12.17523 -12.13316 -11.81018 -11.22355 -11.16085 -11.09266 -10.78788 -10.16156 -9.88960 -9.67322 -9.01056 -8.45831 -6.14293 0.39720 0.73103 1.36973 1.42935 1.46992 1.52465 1.52809 1.93484 2.18431 2.34267 2.86441 3.18831 3.39965 3.40584 3.51088 3.73802 3.87177 4.00537 4.09766 4.12030 4.18381 4.32647 4.42179 4.46378 4.55114 4.68334 4.75410 4.76483 4.84281 4.90815 5.03740 5.05068 5.13123 5.17817 5.27857 5.29754 5.33272 5.64502 5.72712 5.74172 6.02893 6.18730 6.25141 6.53379 6.93656 6.99203 7.15477 7.79665 8.76943 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002449 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.941600 B =11429.150956 C =12016.160729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.235 4.235 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.058 4.058 15 C 0.174 3.826 16 N -0.704 5.704 17 C 0.499 3.501 18 O -0.577 6.577 19 C 0.112 3.888 20 H 0.135 0.865 21 C -0.114 4.114 22 C -0.117 4.117 23 C 0.090 3.910 24 N -0.607 5.607 25 C 0.516 3.484 26 O -0.599 6.599 27 C -0.181 4.181 28 H 0.272 0.728 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.417 0.583 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.149 0.851 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -15.636 11.404 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.255 4.255 12 C -0.087 4.087 13 C -0.185 4.185 14 C -0.058 4.058 15 C 0.051 3.949 16 N -0.357 5.357 17 C 0.285 3.715 18 O -0.457 6.457 19 C 0.005 3.995 20 H 0.153 0.847 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.032 4.032 24 N -0.342 5.342 25 C 0.288 3.712 26 O -0.478 6.478 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.254 0.746 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.165 0.835 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.952 -16.499 10.825 21.669 hybrid contribution -0.171 1.373 -0.388 1.437 sum 8.782 -15.126 10.437 20.368 Atomic orbital electron populations 1.70177 1.08042 1.28824 1.48891 1.26553 0.96778 1.02725 0.95934 0.84677 0.77394 0.74405 0.79971 1.18275 1.19983 1.17936 1.21769 0.92528 0.81364 1.53140 0.87901 1.83947 1.35956 1.12602 1.81428 1.19876 0.91638 0.87862 0.94467 1.21382 0.93029 1.00448 1.10596 1.21163 1.00414 0.91159 0.96010 1.20994 0.93014 0.98223 1.06271 1.19415 0.93931 0.92399 1.00085 1.20023 0.99686 0.92619 0.82596 1.45983 1.60157 1.21029 1.08491 1.21480 0.76977 0.80822 0.92216 1.90744 1.52016 1.49007 1.53889 1.21962 0.91692 0.94434 0.91398 0.84716 1.22703 0.93040 1.00310 0.99107 1.22792 0.95959 0.98623 0.98065 1.22429 0.96292 0.88335 0.96120 1.48861 1.09241 1.17382 1.58700 1.22647 0.79678 0.92211 0.76700 1.90671 1.55447 1.44296 1.57411 1.20226 0.99422 0.90136 1.10312 0.91912 0.86317 0.83422 0.83242 0.92054 0.89555 0.74641 0.90435 0.85458 0.88632 0.87443 0.90794 0.92530 0.83479 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 13.67 21.61 0.30 -54.79 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 3 Si 1.02 41.09 29.55 68.60 2.03 43.11 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.41 -22.85 9.49 67.92 0.64 -22.20 16 8 H 0.10 5.16 5.20 -2.91 -0.02 5.15 16 9 O -0.23 -13.28 9.76 -22.71 -0.22 -13.50 16 10 C 0.11 5.09 6.65 22.58 0.15 5.24 16 11 C -0.24 -9.11 9.17 22.39 0.21 -8.90 16 12 C -0.07 -1.98 10.04 22.25 0.22 -1.76 16 13 C -0.17 -4.13 9.70 22.30 0.22 -3.91 16 14 C -0.06 -1.62 5.25 -19.88 -0.10 -1.72 16 15 C 0.17 4.08 5.80 85.63 0.50 4.57 16 16 N -0.70 -12.98 5.55 -466.80 -2.59 -15.56 16 17 C 0.50 10.07 6.72 87.66 0.59 10.66 16 18 O -0.58 -17.20 16.16 -3.05 -0.05 -17.25 16 19 C 0.11 1.48 3.51 44.59 0.16 1.64 16 20 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 21 C -0.11 -0.82 6.47 31.78 0.21 -0.61 16 22 C -0.12 -0.81 7.08 31.98 0.23 -0.59 16 23 C 0.09 1.44 6.91 86.85 0.60 2.04 16 24 N -0.61 -11.66 2.75 -808.17 -2.23 -13.89 16 25 C 0.52 12.76 11.52 129.79 1.49 14.26 16 26 O -0.60 -20.09 17.43 -3.03 -0.05 -20.14 16 27 C -0.18 -6.86 9.65 22.39 0.22 -6.65 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.12 4.74 5.64 -2.91 -0.02 4.72 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.06 1.64 8.08 -2.38 -0.02 1.62 16 33 H 0.09 1.88 8.09 -2.38 -0.02 1.86 16 34 H 0.42 5.91 8.46 -92.71 -0.78 5.12 16 35 H 0.08 0.71 7.84 -2.38 -0.02 0.69 16 36 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 1.28 8.04 -2.38 -0.02 1.26 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -81.55 362.23 3.24 -78.32 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.27 Total: 22.40 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.79 Total: -8.70 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -4.52 Total: -84.24 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.32 Total: -50.89 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -81.55 3.24 -78.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261691845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.355 kcal (2) G-P(sol) polarization free energy of solvation -81.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds