Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48507 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46892 * 299.99651 * 3 2 1 6 6 H 1.48498 * 109.47388 * 59.99849 * 3 2 1 7 7 C 1.38658 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99956 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99555 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99569 * 185.05543 * 9 7 2 11 11 C 1.38903 * 120.06948 * 354.48699 * 10 9 7 12 12 C 1.38075 * 119.92852 * 179.72195 * 11 10 9 13 13 C 1.38323 * 120.07204 * 0.51301 * 12 11 10 14 14 C 1.38287 * 120.13433 * 359.48924 * 13 12 11 15 15 C 1.50701 * 119.96298 * 180.23191 * 14 13 12 16 16 N 1.46504 * 109.46895 * 89.99938 * 15 14 13 17 17 C 1.34776 * 119.99824 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00025 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.87579 * 318.98510 * 19 17 16 21 21 C 1.54325 * 109.87960 * 80.00494 * 19 17 16 22 22 C 1.55154 * 102.94186 * 141.61050 * 21 19 17 23 23 C 1.54907 * 101.58124 * 324.49414 * 22 21 19 24 24 N 1.47022 * 109.88258 * 197.81311 * 19 17 16 25 25 C 1.34775 * 125.65296 * 61.61811 * 24 19 17 26 26 O 1.21280 * 119.99706 * 0.02562 * 25 24 19 27 27 C 1.38121 * 120.07014 * 0.25195 * 14 13 12 28 28 H 0.97004 * 119.99663 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03444 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.96599 * 180.25551 * 12 11 10 31 31 H 1.07992 * 119.93228 * 179.76346 * 13 12 11 32 32 H 1.08999 * 109.46696 * 209.99981 * 15 14 13 33 33 H 1.08997 * 109.47226 * 330.00099 * 15 14 13 34 34 H 0.96999 * 119.99773 * 359.97438 * 16 15 14 35 35 H 1.08997 * 110.71828 * 259.97446 * 21 19 17 36 36 H 1.09003 * 110.71978 * 23.06690 * 21 19 17 37 37 H 1.08996 * 111.00514 * 82.56878 * 22 21 19 38 38 H 1.08996 * 111.00357 * 206.38337 * 22 21 19 39 39 H 1.09008 * 110.36431 * 155.84882 * 23 22 21 40 40 H 1.09000 * 110.36854 * 278.05987 * 23 22 21 41 41 H 1.07999 * 120.00284 * 180.02562 * 25 24 19 42 42 H 1.08000 * 120.03379 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3345 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0957 12 6 4.2022 -4.5964 0.2106 13 6 3.5683 -5.8203 0.3269 14 6 2.1872 -5.8884 0.3391 15 6 1.5006 -7.2234 0.4713 16 7 1.2837 -7.5227 1.8889 17 6 0.6805 -8.6725 2.2503 18 8 0.3177 -9.4596 1.4018 19 6 0.4579 -8.9807 3.7085 20 1 1.3356 -8.6915 4.2866 21 6 -0.7828 -8.2203 4.2222 22 6 -1.4479 -9.2458 5.1779 23 6 -1.1572 -10.5824 4.4509 24 7 0.1925 -10.4164 3.8813 25 6 1.0420 -11.4154 3.5700 26 8 2.1326 -11.1610 3.1045 27 6 1.4363 -4.7343 0.2299 28 1 -0.4850 0.8401 -0.0004 29 1 3.9528 -2.4845 0.0015 30 1 5.2810 -4.5460 0.2055 31 1 4.1532 -6.7240 0.4128 32 1 0.5407 -7.1909 -0.0442 33 1 2.1252 -7.9987 0.0277 34 1 1.5742 -6.8933 2.5674 35 1 -0.4875 -7.3225 4.7650 36 1 -1.4497 -7.9688 3.3974 37 1 -0.9778 -9.2255 6.1610 38 1 -2.5204 -9.0683 5.2562 39 1 -1.1706 -11.4105 5.1596 40 1 -1.8870 -10.7501 3.6589 41 1 0.7516 -12.4424 3.7351 42 1 0.3577 -4.7881 0.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261691846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = -66.085538 kcal Electronic energy + Delta-G solvation = -25715.341439 eV Core-core repulsion = 21854.297029 eV Total energy + Delta-G solvation = -3861.044410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71997 -39.26136 -38.58571 -37.34206 -36.71989 -34.47131 -32.35272 -31.96578 -31.09426 -29.79295 -29.02923 -26.03282 -25.20250 -24.57511 -21.99307 -21.84195 -21.64277 -20.79267 -19.82908 -18.09502 -17.54657 -17.40538 -17.03589 -16.28130 -15.64810 -15.36606 -15.05999 -14.82869 -14.55327 -14.41844 -14.35448 -13.75353 -13.68392 -13.58316 -13.41365 -13.16521 -12.73853 -12.61608 -12.38581 -12.26474 -11.86490 -11.71661 -11.66262 -11.40645 -11.28628 -10.96546 -10.81030 -10.69247 -10.46966 -10.12938 -9.98296 -9.41653 -8.95863 -8.93232 -8.88358 -8.23313 -7.33253 -6.50574 -4.09917 1.88837 2.26799 2.45943 2.64207 2.81093 3.08350 3.10244 3.15752 3.45489 3.91588 4.06762 4.14887 4.46615 4.53353 4.70416 4.76709 4.84579 4.94632 5.04362 5.06915 5.18598 5.29098 5.38035 5.43551 5.48930 5.54359 5.72904 5.76264 5.85404 5.87128 5.95641 6.07900 6.25065 6.50734 6.55396 6.81571 6.99468 7.19334 7.19696 7.27542 7.34738 7.58237 7.71436 7.90184 7.93929 8.28422 8.95124 9.63876 10.67322 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.002578 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.593104 B =10859.578218 C =11756.159967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.151 3.849 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.170 3.830 16 N -0.717 5.717 17 C 0.509 3.491 18 O -0.535 6.535 19 C 0.115 3.885 20 H 0.098 0.902 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.101 3.899 24 N -0.609 5.609 25 C 0.513 3.487 26 O -0.543 6.543 27 C -0.171 4.171 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.403 0.597 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -16.888 11.657 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.073 4.073 15 C 0.047 3.953 16 N -0.369 5.369 17 C 0.294 3.706 18 O -0.411 6.411 19 C 0.007 3.993 20 H 0.116 0.884 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.022 4.022 24 N -0.346 5.346 25 C 0.283 3.717 26 O -0.417 6.417 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.151 0.849 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.965 -17.220 10.716 20.377 hybrid contribution 0.646 1.212 0.214 1.390 sum -1.319 -16.008 10.930 19.428 Atomic orbital electron populations 1.70047 1.05964 1.27626 1.45988 1.25294 0.95849 0.98848 0.96491 0.85645 0.79143 0.80335 0.78297 1.19090 1.20106 1.20113 1.21373 0.91824 0.80756 1.52913 0.88997 1.83984 1.34269 1.11409 1.78389 1.19317 0.90248 0.88053 0.92696 1.21250 0.93849 0.99107 1.10266 1.20753 0.98606 0.92227 0.97833 1.20511 0.93395 0.97179 1.10230 1.19272 0.93511 0.92817 1.01702 1.20136 1.00015 0.93763 0.81396 1.46063 1.60624 1.21177 1.08996 1.20716 0.77518 0.81373 0.91028 1.90675 1.50563 1.47559 1.52345 1.21510 1.00636 0.83353 0.93835 0.88434 1.22637 0.95086 0.98412 0.99982 1.22783 1.01965 0.93490 0.98637 1.22360 0.83706 0.98778 0.97366 1.48833 1.17207 1.05177 1.63425 1.22311 0.83598 0.89189 0.76571 1.90740 1.22706 1.85207 1.43015 1.20068 0.99371 0.89788 1.09902 0.92021 0.85443 0.87258 0.87459 0.90969 0.91010 0.76307 0.88744 0.89732 0.90093 0.89199 0.90001 0.90847 0.84898 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -4.92 9.76 0.02 0.00 -4.92 16 10 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 11 C -0.23 -4.74 9.17 -39.40 -0.36 -5.10 16 12 C -0.08 -1.36 10.04 -39.61 -0.40 -1.75 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.07 -1.26 5.25 -104.65 -0.55 -1.80 16 15 C 0.17 2.65 5.80 -5.19 -0.03 2.62 16 16 N -0.72 -9.97 5.55 -61.47 -0.34 -10.31 16 17 C 0.51 7.35 6.28 -10.99 -0.07 7.28 16 18 O -0.54 -9.71 16.09 5.56 0.09 -9.62 16 19 C 0.11 1.20 3.26 -68.10 -0.22 0.98 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.12 -0.91 6.47 -24.90 -0.16 -1.07 16 22 C -0.13 -0.65 7.08 -24.59 -0.17 -0.82 16 23 C 0.10 0.59 7.21 -2.53 -0.02 0.57 16 24 N -0.61 -5.96 2.76 -169.37 -0.47 -6.43 16 25 C 0.51 5.75 11.63 54.05 0.63 6.38 16 26 O -0.54 -8.93 16.96 5.56 0.09 -8.83 16 27 C -0.17 -3.47 9.65 -39.40 -0.38 -3.85 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 29 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 30 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.40 4.90 8.46 -40.82 -0.35 4.56 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 361.52 15.07 5.45 5.45 Total: -1.00 -35.96 361.52 -7.14 -43.11 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.52 Total: 6.93 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.18 Total: -6.44 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.05 Total: -40.74 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.96 -7.14 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261691846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.980 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds