Wall clock time and date at job start Tue Mar 31 2020 12:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48507 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46892 * 299.99651 * 3 2 1 6 6 H 1.48498 * 109.47388 * 59.99849 * 3 2 1 7 7 C 1.38658 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99956 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99555 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99569 * 185.05543 * 9 7 2 11 11 C 1.38903 * 120.06948 * 354.48699 * 10 9 7 12 12 C 1.38075 * 119.92852 * 179.72195 * 11 10 9 13 13 C 1.38323 * 120.07204 * 0.51301 * 12 11 10 14 14 C 1.38287 * 120.13433 * 359.48924 * 13 12 11 15 15 C 1.50701 * 119.96298 * 180.23191 * 14 13 12 16 16 N 1.46504 * 109.46895 * 89.99938 * 15 14 13 17 17 C 1.34776 * 119.99824 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00025 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.87579 * 318.98510 * 19 17 16 21 21 C 1.54325 * 109.87960 * 80.00494 * 19 17 16 22 22 C 1.55154 * 102.94186 * 141.61050 * 21 19 17 23 23 C 1.54907 * 101.58124 * 324.49414 * 22 21 19 24 24 N 1.47022 * 109.88258 * 197.81311 * 19 17 16 25 25 C 1.34775 * 125.65296 * 61.61811 * 24 19 17 26 26 O 1.21280 * 119.99706 * 0.02562 * 25 24 19 27 27 C 1.38121 * 120.07014 * 0.25195 * 14 13 12 28 28 H 0.97004 * 119.99663 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03444 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.96599 * 180.25551 * 12 11 10 31 31 H 1.07992 * 119.93228 * 179.76346 * 13 12 11 32 32 H 1.08999 * 109.46696 * 209.99981 * 15 14 13 33 33 H 1.08997 * 109.47226 * 330.00099 * 15 14 13 34 34 H 0.96999 * 119.99773 * 359.97438 * 16 15 14 35 35 H 1.08997 * 110.71828 * 259.97446 * 21 19 17 36 36 H 1.09003 * 110.71978 * 23.06690 * 21 19 17 37 37 H 1.08996 * 111.00514 * 82.56878 * 22 21 19 38 38 H 1.08996 * 111.00357 * 206.38337 * 22 21 19 39 39 H 1.09008 * 110.36431 * 155.84882 * 23 22 21 40 40 H 1.09000 * 110.36854 * 278.05987 * 23 22 21 41 41 H 1.07999 * 120.00284 * 180.02562 * 25 24 19 42 42 H 1.08000 * 120.03379 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3345 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0957 12 6 4.2022 -4.5964 0.2106 13 6 3.5683 -5.8203 0.3269 14 6 2.1872 -5.8884 0.3391 15 6 1.5006 -7.2234 0.4713 16 7 1.2837 -7.5227 1.8889 17 6 0.6805 -8.6725 2.2503 18 8 0.3177 -9.4596 1.4018 19 6 0.4579 -8.9807 3.7085 20 1 1.3356 -8.6915 4.2866 21 6 -0.7828 -8.2203 4.2222 22 6 -1.4479 -9.2458 5.1779 23 6 -1.1572 -10.5824 4.4509 24 7 0.1925 -10.4164 3.8813 25 6 1.0420 -11.4154 3.5700 26 8 2.1326 -11.1610 3.1045 27 6 1.4363 -4.7343 0.2299 28 1 -0.4850 0.8401 -0.0004 29 1 3.9528 -2.4845 0.0015 30 1 5.2810 -4.5460 0.2055 31 1 4.1532 -6.7240 0.4128 32 1 0.5407 -7.1909 -0.0442 33 1 2.1252 -7.9987 0.0277 34 1 1.5742 -6.8933 2.5674 35 1 -0.4875 -7.3225 4.7650 36 1 -1.4497 -7.9688 3.3974 37 1 -0.9778 -9.2255 6.1610 38 1 -2.5204 -9.0683 5.2562 39 1 -1.1706 -11.4105 5.1596 40 1 -1.8870 -10.7501 3.6589 41 1 0.7516 -12.4424 3.7351 42 1 0.3577 -4.7881 0.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261691846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:54 Heat of formation + Delta-G solvation = -91.964538 kcal Electronic energy + Delta-G solvation = -25716.463636 eV Core-core repulsion = 21854.297029 eV Total energy + Delta-G solvation = -3862.166607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66090 -40.86283 -39.75607 -38.51951 -38.04404 -35.81845 -34.29619 -32.80227 -32.29702 -30.98512 -30.37430 -27.60500 -26.83506 -25.39621 -23.32921 -22.93337 -22.45294 -22.29681 -20.86196 -19.61662 -18.98918 -18.48442 -18.21994 -17.23262 -16.85840 -16.75004 -16.56277 -16.13157 -15.96993 -15.80492 -15.52657 -15.18310 -14.97274 -14.66501 -14.36709 -14.27255 -13.96826 -13.89335 -13.70413 -13.38623 -13.30200 -13.05443 -12.70118 -12.59482 -12.38060 -12.31047 -12.15256 -12.08909 -11.81272 -11.24714 -11.08539 -11.04069 -10.82122 -10.19781 -9.86387 -9.66788 -9.06320 -8.47706 -6.16155 0.34371 0.66827 1.36212 1.43485 1.49041 1.54032 1.67550 2.02133 2.16916 2.36937 2.83602 3.15284 3.34696 3.45057 3.55763 3.74001 3.83487 4.02128 4.05381 4.15429 4.21806 4.26856 4.35478 4.48754 4.52724 4.60056 4.69430 4.77198 4.83534 4.89375 4.97038 5.06244 5.10922 5.20147 5.22378 5.29761 5.32223 5.58902 5.67225 5.68483 6.00701 6.11985 6.39657 6.53114 6.97202 7.07606 7.16697 7.76291 8.75439 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.002578 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.593104 B =10859.578218 C =11756.159967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.116 3.884 11 C -0.233 4.233 12 C -0.068 4.068 13 C -0.173 4.173 14 C -0.058 4.058 15 C 0.177 3.823 16 N -0.713 5.713 17 C 0.504 3.496 18 O -0.577 6.577 19 C 0.112 3.888 20 H 0.105 0.895 21 C -0.122 4.122 22 C -0.120 4.120 23 C 0.095 3.905 24 N -0.610 5.610 25 C 0.505 3.495 26 O -0.604 6.604 27 C -0.178 4.178 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.183 0.817 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -18.376 13.495 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.065 3.935 11 C -0.252 4.252 12 C -0.086 4.086 13 C -0.192 4.192 14 C -0.059 4.059 15 C 0.053 3.947 16 N -0.365 5.365 17 C 0.291 3.709 18 O -0.456 6.456 19 C 0.004 3.996 20 H 0.123 0.877 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.026 4.026 24 N -0.346 5.346 25 C 0.278 3.722 26 O -0.482 6.482 27 C -0.198 4.198 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.199 0.801 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.640 -18.745 12.596 22.593 hybrid contribution 0.285 1.342 -0.344 1.415 sum -0.356 -17.402 12.252 21.285 Atomic orbital electron populations 1.70188 1.08011 1.28747 1.48806 1.26565 0.96823 1.02685 0.95852 0.84537 0.78303 0.74921 0.78513 1.17410 1.19545 1.19314 1.21861 0.92550 0.81309 1.53134 0.87940 1.83952 1.35874 1.12531 1.81284 1.19810 0.91543 0.87823 0.94282 1.21377 0.93063 1.00327 1.10456 1.21133 1.00422 0.91043 0.95991 1.20953 0.93195 0.98182 1.06846 1.19391 0.93886 0.92460 1.00150 1.19965 0.99528 0.92555 0.82643 1.45997 1.60538 1.21533 1.08393 1.21511 0.76266 0.80543 0.92603 1.90647 1.52265 1.48769 1.53908 1.21647 1.02433 0.84699 0.90859 0.87718 1.22684 0.93632 0.99479 1.00189 1.22822 1.02948 0.91624 0.98401 1.22645 0.81400 1.00656 0.97899 1.49071 1.18452 1.04613 1.62433 1.23259 0.82715 0.91020 0.75205 1.90706 1.25375 1.86180 1.45955 1.20174 0.99448 0.89930 1.10230 0.91834 0.85947 0.83414 0.84272 0.91706 0.90833 0.75220 0.87223 0.91311 0.88497 0.87445 0.86563 0.91335 0.80126 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.67 21.61 0.30 -55.15 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 3 Si 1.02 41.91 29.55 68.60 2.03 43.93 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.48 9.76 -22.85 -0.22 -13.71 16 10 C 0.12 5.57 6.65 22.58 0.15 5.72 16 11 C -0.23 -9.71 9.17 22.39 0.21 -9.51 16 12 C -0.07 -2.24 10.04 22.25 0.22 -2.01 16 13 C -0.17 -5.36 9.70 22.30 0.22 -5.14 16 14 C -0.06 -1.96 5.25 -19.88 -0.10 -2.06 16 15 C 0.18 5.39 5.80 85.63 0.50 5.89 16 16 N -0.71 -19.32 5.55 -466.78 -2.59 -21.91 16 17 C 0.50 14.36 6.28 87.66 0.55 14.91 16 18 O -0.58 -21.05 16.09 -3.04 -0.05 -21.09 16 19 C 0.11 2.20 3.26 44.60 0.15 2.34 16 20 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 21 C -0.12 -1.59 6.47 31.78 0.21 -1.38 16 22 C -0.12 -0.80 7.08 31.98 0.23 -0.58 16 23 C 0.10 0.83 7.21 86.85 0.63 1.46 16 24 N -0.61 -10.77 2.76 -808.15 -2.23 -12.99 16 25 C 0.51 10.54 11.63 129.79 1.51 12.05 16 26 O -0.60 -19.65 16.96 -3.03 -0.05 -19.71 16 27 C -0.18 -7.37 9.65 22.39 0.22 -7.15 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.07 2.26 8.08 -2.39 -0.02 2.25 16 34 H 0.41 9.59 8.46 -92.71 -0.78 8.80 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -84.21 361.52 3.23 -80.98 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.27 Total: 28.61 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.78 Total: -8.97 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -4.52 Total: -90.05 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.32 Total: -54.51 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -84.21 3.23 -80.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261691846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.981 kcal (2) G-P(sol) polarization free energy of solvation -84.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds