Wall clock time and date at job start Tue Mar 31 2020 12:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47109 * 269.99816 * 3 2 1 5 5 H 1.48501 * 109.46927 * 29.99887 * 3 2 1 6 6 H 1.48502 * 109.47172 * 149.99535 * 3 2 1 7 7 C 1.38652 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99848 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.35741 * 117.00195 * 185.42014 * 9 7 2 11 11 C 1.38904 * 120.07197 * 5.73539 * 10 9 7 12 12 C 1.38078 * 119.93459 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06443 * 359.74040 * 12 11 10 14 14 C 1.38279 * 120.14126 * 0.51605 * 13 12 11 15 15 C 1.50700 * 119.96449 * 179.76582 * 14 13 12 16 16 N 1.46501 * 109.46631 * 269.71862 * 15 14 13 17 17 C 1.34784 * 119.99578 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00220 * 354.99525 * 17 16 15 19 19 C 1.50701 * 119.99594 * 174.98335 * 17 16 15 20 20 C 1.50705 * 112.84841 * 55.44085 * 19 17 16 21 21 N 1.34773 * 120.00241 * 65.07081 * 20 19 17 22 22 O 1.21283 * 119.99710 * 245.07617 * 20 19 17 23 23 C 1.53777 * 113.61636 * 284.23799 * 19 17 16 24 24 C 1.53957 * 87.01825 * 220.05028 * 23 19 17 25 25 C 1.53779 * 113.60967 * 186.62661 * 19 17 16 26 26 C 1.38126 * 120.06629 * 359.48913 * 14 13 12 27 27 H 0.96995 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.02897 * 359.95487 * 11 10 9 29 29 H 1.07999 * 119.96759 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.92786 * 180.27594 * 13 12 11 31 31 H 1.09001 * 109.46633 * 149.72507 * 15 14 13 32 32 H 1.08996 * 109.47255 * 29.72265 * 15 14 13 33 33 H 0.96999 * 120.00497 * 0.28087 * 16 15 14 34 34 H 0.96998 * 119.99883 * 355.00712 * 21 20 19 35 35 H 0.96996 * 120.00065 * 174.99228 * 21 20 19 36 36 H 1.08995 * 113.61749 * 334.57016 * 23 19 17 37 37 H 1.09002 * 113.61167 * 105.47540 * 23 19 17 38 38 H 1.09000 * 113.53747 * 270.81278 * 24 23 19 39 39 H 1.09001 * 113.74248 * 139.94619 * 24 23 19 40 40 H 1.08997 * 113.61708 * 254.52909 * 25 19 17 41 41 H 1.08998 * 113.61600 * 25.35688 * 25 19 17 42 42 H 1.08003 * 120.03245 * 180.23630 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0693 -3.5042 0.1153 11 6 3.4371 -3.4281 0.3453 12 6 4.1815 -4.5852 0.4621 13 6 3.5656 -5.8192 0.3557 14 6 2.2051 -5.8982 0.1215 15 6 1.5390 -7.2447 0.0010 16 7 1.5513 -7.6718 -1.4003 17 6 1.0067 -8.8543 -1.7491 18 8 0.5884 -9.6053 -0.8936 19 6 0.9174 -9.2433 -3.2024 20 6 2.2524 -9.2078 -3.9007 21 7 3.2281 -10.0619 -3.5333 22 8 2.4488 -8.4106 -4.7934 23 6 -0.1981 -8.5127 -3.9682 24 6 -0.4763 -9.8502 -4.6781 25 6 0.1296 -10.5414 -3.4452 26 6 1.4550 -4.7444 0.0036 27 1 -0.4850 0.8400 -0.0004 28 1 3.9178 -2.4649 0.4323 29 1 5.2449 -4.5267 0.6413 30 1 4.1492 -6.7228 0.4518 31 1 0.5089 -7.1729 0.3500 32 1 2.0783 -7.9724 0.6074 33 1 1.9551 -7.1056 -2.0765 34 1 3.0972 -10.6495 -2.7728 35 1 4.0610 -10.0892 -4.0296 36 1 -1.0172 -8.1774 -3.3321 37 1 0.1688 -7.7318 -4.6344 38 1 0.1076 -9.9898 -5.5879 39 1 -1.5366 -10.0599 -4.8193 40 1 0.7605 -11.3959 -3.6898 41 1 -0.5988 -10.7626 -2.6651 42 1 0.3917 -4.8068 -0.1755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318919922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:45 Heat of formation + Delta-G solvation = -60.888066 kcal Electronic energy + Delta-G solvation = -26005.749170 eV Core-core repulsion = 22144.930140 eV Total energy + Delta-G solvation = -3860.819030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39878 -39.35602 -38.84691 -37.34252 -36.71070 -34.60247 -33.98682 -32.35358 -30.97618 -29.23771 -27.92828 -26.03009 -25.69144 -24.96927 -22.53140 -21.76125 -21.20172 -20.83363 -19.36245 -18.45517 -17.61366 -17.44714 -17.00391 -16.37781 -16.01675 -15.52832 -15.26736 -15.04839 -14.63147 -14.48630 -14.37537 -14.23270 -13.70374 -13.57233 -13.48531 -12.79744 -12.74465 -12.53794 -12.35391 -12.14535 -11.69745 -11.61922 -11.40999 -11.28786 -10.94578 -10.87013 -10.75466 -10.70658 -10.48860 -10.31628 -10.04277 -9.83789 -9.45986 -9.11288 -8.90063 -8.27169 -7.35197 -6.50534 -4.09996 1.85252 2.16144 2.24377 2.37906 3.08571 3.08979 3.10444 3.15329 3.21667 3.91687 4.11340 4.17789 4.43227 4.45705 4.52023 4.62843 4.89387 5.04451 5.08434 5.22183 5.34830 5.49586 5.50647 5.60082 5.67763 5.69892 5.78272 5.79844 5.84792 6.03754 6.05899 6.22344 6.33688 6.41241 6.52361 6.78880 6.91715 6.97700 7.14590 7.24171 7.32937 7.41077 7.68717 7.86379 7.93420 8.04005 8.94781 9.63035 10.67172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.002795 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.463128 B =10013.840105 C =10411.779324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.151 3.849 11 C -0.224 4.224 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.075 4.075 15 C 0.167 3.833 16 N -0.713 5.713 17 C 0.531 3.469 18 O -0.535 6.535 19 C -0.141 4.141 20 C 0.547 3.453 21 N -0.848 5.848 22 O -0.525 6.525 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.103 4.103 26 C -0.171 4.171 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.406 0.594 34 H 0.404 0.596 35 H 0.405 0.595 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -19.318 -5.867 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.097 3.903 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.076 4.076 15 C 0.045 3.955 16 N -0.363 5.363 17 C 0.316 3.684 18 O -0.412 6.412 19 C -0.147 4.147 20 C 0.330 3.670 21 N -0.412 5.412 22 O -0.400 6.400 23 C -0.146 4.146 24 C -0.179 4.179 25 C -0.140 4.140 26 C -0.191 4.191 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.241 0.759 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.264 -19.023 -5.804 20.155 hybrid contribution 1.158 0.917 0.020 1.477 sum 4.422 -18.106 -5.784 19.515 Atomic orbital electron populations 1.70035 1.05976 1.27801 1.45646 1.25300 0.95853 0.98872 0.96414 0.85708 0.78912 0.80014 0.78785 1.19807 1.20201 1.19179 1.21318 0.91783 0.80772 1.53067 0.89067 1.83993 1.34214 1.11450 1.78186 1.19327 0.90372 0.87997 0.92628 1.21257 0.94335 0.99075 1.09687 1.20744 0.98550 0.92212 0.97913 1.20457 0.93779 0.96949 1.10281 1.19234 0.93773 0.92692 1.01875 1.20213 1.00943 0.92883 0.81495 1.46203 1.59034 1.20432 1.10674 1.19833 0.77895 0.81574 0.89114 1.90706 1.48311 1.51262 1.50889 1.22402 0.95157 1.03358 0.93802 1.19550 0.84694 0.80090 0.82682 1.43757 1.19043 1.42333 1.36059 1.90789 1.81315 1.37141 1.30769 1.22870 0.95333 0.98070 0.98344 1.22915 1.02007 0.95716 0.97300 1.22858 0.98803 0.93516 0.98867 1.20073 0.99779 0.89577 1.09621 0.91919 0.85416 0.87267 0.87597 0.90638 0.90727 0.75901 0.76718 0.76311 0.88575 0.88782 0.89757 0.90238 0.90664 0.87582 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.79 9.44 30.89 0.29 -10.50 16 8 H 0.09 2.31 5.30 -52.48 -0.28 2.03 16 9 O -0.18 -4.90 9.76 0.07 0.00 -4.89 16 10 C 0.15 3.53 6.65 -39.10 -0.26 3.27 16 11 C -0.22 -4.70 9.13 -39.39 -0.36 -5.06 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.20 -3.19 9.70 -39.53 -0.38 -3.57 16 14 C -0.08 -1.26 5.25 -104.65 -0.55 -1.81 16 15 C 0.17 2.38 5.80 -5.19 -0.03 2.35 16 16 N -0.71 -9.35 5.49 -61.47 -0.34 -9.69 16 17 C 0.53 6.72 6.84 -10.98 -0.08 6.64 16 18 O -0.53 -7.98 15.97 5.56 0.09 -7.89 16 19 C -0.14 -1.47 1.06 -156.00 -0.17 -1.63 16 20 C 0.55 5.90 6.44 -10.98 -0.07 5.83 16 21 N -0.85 -6.21 8.87 31.22 0.28 -5.93 16 22 O -0.53 -7.50 16.77 5.56 0.09 -7.41 16 23 C -0.11 -1.10 7.10 -25.83 -0.18 -1.29 16 24 C -0.14 -1.17 7.81 -25.82 -0.20 -1.37 16 25 C -0.10 -0.87 6.95 -25.92 -0.18 -1.05 16 26 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.13 2.70 5.71 -52.49 -0.30 2.40 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.41 5.42 8.25 -40.82 -0.34 5.08 16 34 H 0.40 2.33 8.83 -40.82 -0.36 1.97 16 35 H 0.41 2.38 8.93 -40.82 -0.36 2.02 16 36 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.09 1.07 7.34 -51.93 -0.38 0.69 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.11 0.97 7.52 -51.93 -0.39 0.58 16 42 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -32.77 361.75 -7.07 -39.84 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.34 Total: 12.23 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.04 Total: -12.76 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.70 Total: -39.76 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.77 -7.07 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318919922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.046 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds