Wall clock time and date at job start Tue Mar 31 2020 12:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47109 * 269.99816 * 3 2 1 5 5 H 1.48501 * 109.46927 * 29.99887 * 3 2 1 6 6 H 1.48502 * 109.47172 * 149.99535 * 3 2 1 7 7 C 1.38652 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99848 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.35741 * 117.00195 * 185.42014 * 9 7 2 11 11 C 1.38904 * 120.07197 * 5.73539 * 10 9 7 12 12 C 1.38078 * 119.93459 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06443 * 359.74040 * 12 11 10 14 14 C 1.38279 * 120.14126 * 0.51605 * 13 12 11 15 15 C 1.50700 * 119.96449 * 179.76582 * 14 13 12 16 16 N 1.46501 * 109.46631 * 269.71862 * 15 14 13 17 17 C 1.34784 * 119.99578 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00220 * 354.99525 * 17 16 15 19 19 C 1.50701 * 119.99594 * 174.98335 * 17 16 15 20 20 C 1.50705 * 112.84841 * 55.44085 * 19 17 16 21 21 N 1.34773 * 120.00241 * 65.07081 * 20 19 17 22 22 O 1.21283 * 119.99710 * 245.07617 * 20 19 17 23 23 C 1.53777 * 113.61636 * 284.23799 * 19 17 16 24 24 C 1.53957 * 87.01825 * 220.05028 * 23 19 17 25 25 C 1.53779 * 113.60967 * 186.62661 * 19 17 16 26 26 C 1.38126 * 120.06629 * 359.48913 * 14 13 12 27 27 H 0.96995 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.02897 * 359.95487 * 11 10 9 29 29 H 1.07999 * 119.96759 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.92786 * 180.27594 * 13 12 11 31 31 H 1.09001 * 109.46633 * 149.72507 * 15 14 13 32 32 H 1.08996 * 109.47255 * 29.72265 * 15 14 13 33 33 H 0.96999 * 120.00497 * 0.28087 * 16 15 14 34 34 H 0.96998 * 119.99883 * 355.00712 * 21 20 19 35 35 H 0.96996 * 120.00065 * 174.99228 * 21 20 19 36 36 H 1.08995 * 113.61749 * 334.57016 * 23 19 17 37 37 H 1.09002 * 113.61167 * 105.47540 * 23 19 17 38 38 H 1.09000 * 113.53747 * 270.81278 * 24 23 19 39 39 H 1.09001 * 113.74248 * 139.94619 * 24 23 19 40 40 H 1.08997 * 113.61708 * 254.52909 * 25 19 17 41 41 H 1.08998 * 113.61600 * 25.35688 * 25 19 17 42 42 H 1.08003 * 120.03245 * 180.23630 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0693 -3.5042 0.1153 11 6 3.4371 -3.4281 0.3453 12 6 4.1815 -4.5852 0.4621 13 6 3.5656 -5.8192 0.3557 14 6 2.2051 -5.8982 0.1215 15 6 1.5390 -7.2447 0.0010 16 7 1.5513 -7.6718 -1.4003 17 6 1.0067 -8.8543 -1.7491 18 8 0.5884 -9.6053 -0.8936 19 6 0.9174 -9.2433 -3.2024 20 6 2.2524 -9.2078 -3.9007 21 7 3.2281 -10.0619 -3.5333 22 8 2.4488 -8.4106 -4.7934 23 6 -0.1981 -8.5127 -3.9682 24 6 -0.4763 -9.8502 -4.6781 25 6 0.1296 -10.5414 -3.4452 26 6 1.4550 -4.7444 0.0036 27 1 -0.4850 0.8400 -0.0004 28 1 3.9178 -2.4649 0.4323 29 1 5.2449 -4.5267 0.6413 30 1 4.1492 -6.7228 0.4518 31 1 0.5089 -7.1729 0.3500 32 1 2.0783 -7.9724 0.6074 33 1 1.9551 -7.1056 -2.0765 34 1 3.0972 -10.6495 -2.7728 35 1 4.0610 -10.0892 -4.0296 36 1 -1.0172 -8.1774 -3.3321 37 1 0.1688 -7.7318 -4.6344 38 1 0.1076 -9.9898 -5.5879 39 1 -1.5366 -10.0599 -4.8193 40 1 0.7605 -11.3959 -3.6898 41 1 -0.5988 -10.7626 -2.6651 42 1 0.3917 -4.8068 -0.1755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318919922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:45 Heat of formation + Delta-G solvation = -85.783534 kcal Electronic energy + Delta-G solvation = -26006.828719 eV Core-core repulsion = 22144.930140 eV Total energy + Delta-G solvation = -3861.898579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28976 -40.89372 -40.00314 -38.59715 -37.94956 -35.83914 -34.75700 -34.30443 -32.36562 -30.84282 -28.94074 -27.46989 -26.78719 -26.35534 -23.39418 -23.28931 -22.54595 -22.02490 -20.23758 -19.73208 -19.16733 -18.59971 -18.18648 -17.35373 -17.02560 -16.84605 -16.59960 -16.28121 -16.09495 -15.78476 -15.61823 -15.50538 -15.12711 -14.92143 -14.52236 -14.32517 -13.98534 -13.72914 -13.52970 -13.42158 -13.12224 -13.01122 -12.55115 -12.48278 -12.40784 -12.30361 -12.12719 -12.01603 -11.49666 -11.27334 -11.17742 -10.90373 -10.80939 -10.76204 -10.22772 -9.78288 -9.05841 -8.48594 -6.17254 0.34669 0.67918 1.26590 1.34682 1.39412 1.43733 1.51962 2.10992 2.16871 2.34372 2.82494 3.14709 3.31618 3.35177 3.38214 3.63129 3.74259 3.80818 3.83304 4.06435 4.28406 4.33600 4.39113 4.49594 4.63061 4.64221 4.70367 4.78412 4.93643 4.97352 4.98411 5.01799 5.09246 5.20925 5.23168 5.34845 5.58906 5.67369 5.68771 5.77334 5.99595 6.13698 6.22562 6.33974 6.96085 6.97258 7.15642 7.75896 8.74507 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.002795 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.463128 B =10013.840105 C =10411.779324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.235 4.235 12 C -0.071 4.071 13 C -0.169 4.169 14 C -0.062 4.062 15 C 0.173 3.827 16 N -0.713 5.713 17 C 0.537 3.463 18 O -0.554 6.554 19 C -0.140 4.140 20 C 0.548 3.452 21 N -0.828 5.828 22 O -0.565 6.565 23 C -0.117 4.117 24 C -0.132 4.132 25 C -0.094 4.094 26 C -0.182 4.182 27 H 0.273 0.727 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.406 0.594 34 H 0.415 0.585 35 H 0.415 0.585 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -21.934 -5.810 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.062 3.938 11 C -0.254 4.254 12 C -0.089 4.089 13 C -0.188 4.188 14 C -0.063 4.063 15 C 0.050 3.950 16 N -0.363 5.363 17 C 0.322 3.678 18 O -0.432 6.432 19 C -0.146 4.146 20 C 0.331 3.669 21 N -0.392 5.392 22 O -0.443 6.443 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.132 4.132 26 C -0.202 4.202 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.241 0.759 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.849 -21.730 -5.730 23.221 hybrid contribution 0.481 1.353 0.029 1.436 sum 6.330 -20.377 -5.701 22.086 Atomic orbital electron populations 1.70182 1.08039 1.28824 1.48738 1.26583 0.96831 1.02748 0.95826 0.84598 0.77872 0.74596 0.79237 1.18892 1.19652 1.17502 1.21805 0.92494 0.81387 1.53259 0.88043 1.83953 1.35887 1.12615 1.81374 1.19872 0.91730 0.87829 0.94392 1.21390 0.93574 1.00382 1.10062 1.21174 1.00297 0.91173 0.96213 1.21007 0.93474 0.98153 1.06178 1.19481 0.94168 0.92672 0.99954 1.20143 1.00709 0.91637 0.82501 1.46151 1.59296 1.20709 1.10125 1.20104 0.76957 0.80904 0.89809 1.90701 1.49032 1.51794 1.51721 1.22443 0.95464 1.04690 0.92044 1.19563 0.85115 0.80044 0.82187 1.43616 1.18569 1.41115 1.35902 1.90782 1.81926 1.38959 1.32663 1.22916 0.95348 0.98792 0.98495 1.22877 1.03090 0.93903 0.97069 1.22860 0.98546 0.93184 0.98608 1.20245 0.99888 0.89923 1.10176 0.91831 0.86215 0.83344 0.83298 0.91237 0.88676 0.75940 0.75436 0.75196 0.88777 0.90391 0.89672 0.88662 0.88655 0.87931 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.38 13.67 21.61 0.30 -56.08 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 3 Si 1.02 42.58 29.55 68.60 2.03 44.61 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.41 -23.86 9.44 67.92 0.64 -23.22 16 8 H 0.10 5.35 5.30 -2.91 -0.02 5.33 16 9 O -0.23 -13.82 9.76 -22.66 -0.22 -14.04 16 10 C 0.11 5.45 6.65 22.58 0.15 5.60 16 11 C -0.23 -9.82 9.13 22.39 0.20 -9.62 16 12 C -0.07 -2.25 10.04 22.25 0.22 -2.03 16 13 C -0.17 -4.82 9.70 22.30 0.22 -4.61 16 14 C -0.06 -1.97 5.25 -19.88 -0.10 -2.07 16 15 C 0.17 4.51 5.80 85.63 0.50 5.01 16 16 N -0.71 -17.38 5.49 -466.78 -2.56 -19.94 16 17 C 0.54 12.55 6.84 87.66 0.60 13.15 16 18 O -0.55 -15.33 15.97 -3.02 -0.05 -15.38 16 19 C -0.14 -2.69 1.06 -53.15 -0.06 -2.75 16 20 C 0.55 10.82 6.44 87.66 0.56 11.39 16 21 N -0.83 -9.79 8.87 -173.53 -1.54 -11.33 16 22 O -0.57 -15.66 16.77 -3.04 -0.05 -15.71 16 23 C -0.12 -2.33 7.10 31.18 0.22 -2.11 16 24 C -0.13 -1.94 7.81 31.18 0.24 -1.70 16 25 C -0.09 -1.38 6.95 31.12 0.22 -1.16 16 26 C -0.18 -7.54 9.65 22.39 0.22 -7.32 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.12 5.13 5.71 -2.91 -0.02 5.11 16 29 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 32 H 0.10 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.41 10.23 8.25 -92.71 -0.76 9.47 16 34 H 0.41 3.37 8.83 -92.71 -0.82 2.55 16 35 H 0.42 3.72 8.93 -92.71 -0.83 2.89 16 36 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 37 H 0.08 1.81 7.34 -2.39 -0.02 1.79 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 41 H 0.10 1.64 7.52 -2.39 -0.02 1.62 16 42 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -76.26 361.75 0.88 -75.37 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -1.32 Total: 34.74 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.30 Total: -22.24 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.81 Total: -87.35 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.32 Total: -45.13 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.26 0.88 -75.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318919922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.410 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds