Wall clock time and date at job start Tue Mar 31 2020 12:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53781 * 113.60891 * 2 1 4 4 C 1.53781 * 87.08165 * 89.11625 * 3 2 1 5 5 N 1.46497 * 113.61321 * 139.97705 * 4 3 2 6 6 C 1.34777 * 119.99840 * 155.00068 * 5 4 3 7 7 O 1.21365 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.49318 * 120.00016 * 179.97438 * 6 5 4 9 9 O 1.21396 * 120.00254 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00016 * 179.97438 * 8 6 5 11 11 C 1.39742 * 119.99891 * 175.49832 * 10 8 6 12 12 C 1.39000 * 120.00744 * 214.86209 * 11 10 8 13 13 C 1.37970 * 119.99422 * 179.76568 * 12 11 10 14 14 C 1.38937 * 120.00246 * 0.51552 * 13 12 11 15 15 O 1.35762 * 119.99078 * 179.71884 * 14 13 12 16 16 C 1.34794 * 117.00059 * 185.36785 * 15 14 13 17 17 H 1.08001 * 120.00504 * 354.96109 * 16 15 14 18 18 C 1.38656 * 119.99968 * 174.96343 * 16 15 14 19 19 N 1.31557 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47226 * 120.00387 * 20 18 16 23 23 H 1.48504 * 109.46986 * 239.99937 * 20 18 16 24 24 C 1.38934 * 120.01811 * 359.74226 * 14 13 12 25 25 C 1.37968 * 120.00800 * 359.97438 * 24 14 13 26 26 C 1.53780 * 113.61559 * 97.49555 * 2 1 3 27 27 H 1.08996 * 109.47295 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.46375 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47088 * 299.99507 * 1 2 3 30 30 H 1.09001 * 112.84985 * 228.80898 * 2 1 3 31 31 H 1.08995 * 113.61909 * 334.56615 * 3 2 1 32 32 H 1.09007 * 113.60906 * 203.66536 * 3 2 1 33 33 H 1.08994 * 113.61356 * 270.87890 * 4 3 2 34 34 H 0.97005 * 120.00357 * 334.99851 * 5 4 3 35 35 H 0.96998 * 120.00145 * 355.50228 * 10 8 6 36 36 H 1.07997 * 120.00154 * 0.02698 * 12 11 10 37 37 H 1.07999 * 119.99784 * 180.23231 * 13 12 11 38 38 H 0.96999 * 120.00318 * 180.02562 * 19 18 16 39 39 H 1.07998 * 119.99508 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00714 * 179.97438 * 25 24 14 41 41 H 1.08996 * 113.61446 * 156.33679 * 26 2 1 42 42 H 1.09003 * 113.61356 * 25.43758 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3468 1.5356 5 7 3.2739 1.9184 2.1873 6 6 3.1851 2.3958 3.4445 7 8 2.1268 2.3517 4.0370 8 6 4.3890 2.9778 4.1089 9 8 5.4477 3.0215 3.5165 10 7 4.3000 3.4557 5.3660 11 6 5.4456 3.9138 6.0220 12 6 5.5835 3.7270 7.3925 13 6 6.7169 4.1751 8.0392 14 6 7.7156 4.8225 7.3224 15 8 8.8282 5.2684 7.9599 16 6 9.7062 5.9847 7.2298 17 1 9.5497 6.1114 6.1688 18 6 10.8104 6.5589 7.8411 19 7 11.0014 6.4041 9.1335 20 14 12.0275 7.5509 6.8292 21 1 11.5896 7.5732 5.4105 22 1 12.0887 8.9399 7.3508 23 1 13.3722 6.9278 6.9220 24 6 7.5758 5.0142 5.9534 25 6 6.4452 4.5611 5.3052 26 6 2.1461 -0.1838 1.3970 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.9533 -0.6615 -0.7559 31 1 1.4945 2.1704 -0.4289 32 1 3.1591 1.4427 -0.4009 33 1 1.1568 1.7150 1.9554 34 1 4.1199 1.9532 1.7139 35 1 3.4408 3.4816 5.8153 36 1 4.8053 3.2274 7.9504 37 1 6.8257 4.0267 9.1033 38 1 11.7736 6.8060 9.5612 39 1 8.3521 5.5178 5.3967 40 1 6.3364 4.7105 4.2412 41 1 3.1591 -0.5856 1.3780 42 1 1.4946 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318981139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:08 Heat of formation + Delta-G solvation = -47.301086 kcal Electronic energy + Delta-G solvation = -25142.597246 eV Core-core repulsion = 21282.367392 eV Total energy + Delta-G solvation = -3860.229855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02886 -39.93816 -38.92545 -38.17292 -36.62098 -34.50035 -33.63005 -32.22718 -30.27977 -29.37222 -28.32408 -26.16951 -25.74766 -25.02348 -23.19161 -22.28771 -21.29949 -20.28521 -19.46931 -18.59442 -17.94292 -17.45012 -17.06582 -16.44241 -16.11237 -15.79665 -15.16721 -14.62381 -14.49690 -14.45438 -14.12319 -13.74063 -13.68956 -13.60014 -13.47571 -12.95947 -12.90192 -12.78226 -12.62272 -11.99828 -11.90946 -11.79643 -11.61274 -11.57665 -11.30728 -11.07707 -10.88810 -10.76066 -10.70150 -10.44588 -9.79980 -9.62889 -9.44296 -9.22510 -8.75932 -8.27030 -7.02138 -6.48831 -4.06027 1.24116 2.11865 2.17456 2.38715 3.10074 3.13152 3.18808 3.20756 3.61490 3.94521 4.01638 4.06620 4.35026 4.37412 4.40835 4.53795 4.96498 5.05619 5.07941 5.19017 5.21377 5.22877 5.35271 5.45061 5.55190 5.59867 5.62264 5.67333 5.73464 5.89509 6.03185 6.08233 6.10537 6.23520 6.62159 6.71944 6.88134 6.95006 7.03676 7.23986 7.37884 7.43818 7.67303 7.71924 7.96167 8.08201 8.96825 9.65342 10.68865 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002132 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.507940 B =13130.037031 C =13845.875848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.119 3.881 5 N -0.693 5.693 6 C 0.513 3.487 7 O -0.523 6.523 8 C 0.495 3.505 9 O -0.510 6.510 10 N -0.623 5.623 11 C 0.022 3.978 12 C -0.085 4.085 13 C -0.178 4.178 14 C 0.150 3.850 15 O -0.173 6.173 16 C -0.391 4.391 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.222 4.222 25 C -0.060 4.060 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.414 0.586 35 H 0.414 0.586 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -10.086 -16.157 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.181 4.181 4 C 0.015 3.985 5 N -0.345 5.345 6 C 0.294 3.706 7 O -0.399 6.399 8 C 0.276 3.724 9 O -0.385 6.385 10 N -0.269 5.269 11 C -0.071 4.071 12 C -0.105 4.105 13 C -0.197 4.197 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.242 4.242 25 C -0.080 4.080 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.251 0.749 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.836 -10.046 -15.744 25.825 hybrid contribution 0.627 0.471 -0.520 0.941 sum -17.209 -9.575 -16.264 25.541 Atomic orbital electron populations 1.21643 0.93535 1.02167 1.02207 1.22170 0.96078 0.97118 0.97771 1.23440 1.02190 0.97805 0.94713 1.22739 0.89669 0.93634 0.92501 1.45789 1.14231 1.60196 1.14304 1.20225 0.88758 0.78826 0.82757 1.90748 1.29660 1.55619 1.63860 1.20046 0.88733 0.80283 0.83353 1.90776 1.29260 1.55059 1.63448 1.42845 1.11021 1.59033 1.13973 1.17247 0.90190 1.07786 0.91838 1.20392 0.97590 1.00205 0.92279 1.20004 0.93515 1.06432 0.99795 1.19445 0.87449 0.92630 0.90936 1.83965 1.25477 1.60413 1.37776 1.21409 1.02682 1.29701 0.92914 0.88853 1.25312 0.97653 0.97378 0.96193 1.70046 1.28407 1.41852 1.09163 0.85630 0.79514 0.78963 0.79251 1.19010 1.20106 1.20114 1.21092 1.00094 1.08467 0.94532 1.20840 0.92830 0.94736 0.99581 1.23534 1.02008 0.96183 0.97094 0.92131 0.92172 0.92237 0.89861 0.90403 0.89240 0.86359 0.74931 0.74984 0.86418 0.85826 0.91990 0.85027 0.85659 0.89426 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.59 37.16 0.36 -0.32 16 2 C -0.11 -0.60 4.55 -89.80 -0.41 -1.01 16 3 C -0.14 -0.82 7.42 -25.92 -0.19 -1.01 16 4 C 0.12 0.93 3.89 -67.12 -0.26 0.67 16 5 N -0.69 -6.70 5.35 -53.49 -0.29 -6.99 16 6 C 0.51 6.44 7.88 -11.65 -0.09 6.35 16 7 O -0.52 -7.35 16.08 5.48 0.09 -7.26 16 8 C 0.49 7.25 7.73 -11.65 -0.09 7.16 16 9 O -0.51 -8.59 13.91 5.46 0.08 -8.52 16 10 N -0.62 -9.18 5.32 -10.27 -0.05 -9.24 16 11 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 12 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 13 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 14 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 15 O -0.17 -4.88 9.75 0.11 0.00 -4.88 16 16 C -0.39 -10.83 9.48 30.89 0.29 -10.54 16 17 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 20 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 25 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 26 C -0.15 -1.02 7.44 -25.92 -0.19 -1.21 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.32 7.34 -51.93 -0.38 -0.06 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.09 0.46 8.12 -51.92 -0.42 0.04 16 33 H 0.12 1.04 6.98 -51.93 -0.36 0.68 16 34 H 0.41 3.62 8.20 -40.82 -0.33 3.28 16 35 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.92 5.63 -52.49 -0.30 2.62 16 40 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -32.01 358.33 -7.25 -39.25 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.25 Total: 9.49 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.96 Total: -8.46 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.42 Total: -40.42 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.01 -7.25 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318981139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.050 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds