Wall clock time and date at job start Tue Mar 31 2020 12:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53781 * 113.60891 * 2 1 4 4 C 1.53781 * 87.08165 * 89.11625 * 3 2 1 5 5 N 1.46497 * 113.61321 * 139.97705 * 4 3 2 6 6 C 1.34777 * 119.99840 * 155.00068 * 5 4 3 7 7 O 1.21365 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.49318 * 120.00016 * 179.97438 * 6 5 4 9 9 O 1.21396 * 120.00254 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00016 * 179.97438 * 8 6 5 11 11 C 1.39742 * 119.99891 * 175.49832 * 10 8 6 12 12 C 1.39000 * 120.00744 * 214.86209 * 11 10 8 13 13 C 1.37970 * 119.99422 * 179.76568 * 12 11 10 14 14 C 1.38937 * 120.00246 * 0.51552 * 13 12 11 15 15 O 1.35762 * 119.99078 * 179.71884 * 14 13 12 16 16 C 1.34794 * 117.00059 * 185.36785 * 15 14 13 17 17 H 1.08001 * 120.00504 * 354.96109 * 16 15 14 18 18 C 1.38656 * 119.99968 * 174.96343 * 16 15 14 19 19 N 1.31557 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47226 * 120.00387 * 20 18 16 23 23 H 1.48504 * 109.46986 * 239.99937 * 20 18 16 24 24 C 1.38934 * 120.01811 * 359.74226 * 14 13 12 25 25 C 1.37968 * 120.00800 * 359.97438 * 24 14 13 26 26 C 1.53780 * 113.61559 * 97.49555 * 2 1 3 27 27 H 1.08996 * 109.47295 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.46375 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47088 * 299.99507 * 1 2 3 30 30 H 1.09001 * 112.84985 * 228.80898 * 2 1 3 31 31 H 1.08995 * 113.61909 * 334.56615 * 3 2 1 32 32 H 1.09007 * 113.60906 * 203.66536 * 3 2 1 33 33 H 1.08994 * 113.61356 * 270.87890 * 4 3 2 34 34 H 0.97005 * 120.00357 * 334.99851 * 5 4 3 35 35 H 0.96998 * 120.00145 * 355.50228 * 10 8 6 36 36 H 1.07997 * 120.00154 * 0.02698 * 12 11 10 37 37 H 1.07999 * 119.99784 * 180.23231 * 13 12 11 38 38 H 0.96999 * 120.00318 * 180.02562 * 19 18 16 39 39 H 1.07998 * 119.99508 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00714 * 179.97438 * 25 24 14 41 41 H 1.08996 * 113.61446 * 156.33679 * 26 2 1 42 42 H 1.09003 * 113.61356 * 25.43758 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3468 1.5356 5 7 3.2739 1.9184 2.1873 6 6 3.1851 2.3958 3.4445 7 8 2.1268 2.3517 4.0370 8 6 4.3890 2.9778 4.1089 9 8 5.4477 3.0215 3.5165 10 7 4.3000 3.4557 5.3660 11 6 5.4456 3.9138 6.0220 12 6 5.5835 3.7270 7.3925 13 6 6.7169 4.1751 8.0392 14 6 7.7156 4.8225 7.3224 15 8 8.8282 5.2684 7.9599 16 6 9.7062 5.9847 7.2298 17 1 9.5497 6.1114 6.1688 18 6 10.8104 6.5589 7.8411 19 7 11.0014 6.4041 9.1335 20 14 12.0275 7.5509 6.8292 21 1 11.5896 7.5732 5.4105 22 1 12.0887 8.9399 7.3508 23 1 13.3722 6.9278 6.9220 24 6 7.5758 5.0142 5.9534 25 6 6.4452 4.5611 5.3052 26 6 2.1461 -0.1838 1.3970 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.9533 -0.6615 -0.7559 31 1 1.4945 2.1704 -0.4289 32 1 3.1591 1.4427 -0.4009 33 1 1.1568 1.7150 1.9554 34 1 4.1199 1.9532 1.7139 35 1 3.4408 3.4816 5.8153 36 1 4.8053 3.2274 7.9504 37 1 6.8257 4.0267 9.1033 38 1 11.7736 6.8060 9.5612 39 1 8.3521 5.5178 5.3967 40 1 6.3364 4.7105 4.2412 41 1 3.1591 -0.5856 1.3780 42 1 1.4946 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318981139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:07 Heat of formation + Delta-G solvation = -69.265321 kcal Electronic energy + Delta-G solvation = -25143.549687 eV Core-core repulsion = 21282.367392 eV Total energy + Delta-G solvation = -3861.182295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13647 -41.01953 -40.31266 -39.27113 -38.21938 -35.76960 -34.68817 -34.16662 -31.91900 -30.13774 -29.64313 -27.46400 -26.66973 -26.29728 -24.22473 -23.75058 -22.67758 -21.44120 -20.45607 -19.86482 -19.37649 -18.76639 -18.41663 -17.65511 -17.13113 -17.04125 -16.30519 -16.14123 -15.82750 -15.54891 -15.45407 -15.25511 -15.09133 -14.70029 -14.45390 -14.21901 -14.07172 -13.59778 -13.48360 -13.39277 -13.28383 -13.24149 -12.78897 -12.72546 -12.50910 -12.43501 -12.10527 -11.97830 -11.46940 -11.37000 -11.21810 -11.11722 -10.71105 -10.58164 -10.22207 -9.88330 -8.70741 -8.47923 -6.14560 0.04361 0.50441 0.68492 1.25057 1.36132 1.43634 1.54004 2.04589 2.17488 2.57766 2.78833 3.12386 3.32724 3.48391 3.50662 3.58869 3.83131 3.87323 4.05644 4.07966 4.44626 4.49339 4.57256 4.58974 4.63981 4.70243 4.76976 4.93335 4.94244 5.04487 5.04787 5.06727 5.12665 5.25355 5.27687 5.34133 5.37248 5.48980 5.53410 5.66032 5.88383 6.01074 6.09640 6.30940 6.69474 6.87592 6.96940 7.74974 8.74809 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002132 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.507940 B =13130.037031 C =13845.875848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.108 3.892 5 N -0.678 5.678 6 C 0.520 3.480 7 O -0.539 6.539 8 C 0.498 3.502 9 O -0.530 6.530 10 N -0.619 5.619 11 C 0.048 3.952 12 C -0.071 4.071 13 C -0.179 4.179 14 C 0.113 3.887 15 O -0.224 6.224 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.021 4.021 19 N -0.916 5.916 20 Si 1.017 2.983 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.228 4.228 25 C -0.068 4.068 26 C -0.149 4.149 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.420 0.580 35 H 0.429 0.571 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.273 0.727 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.155 -11.080 -18.517 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.173 4.173 4 C 0.004 3.996 5 N -0.330 5.330 6 C 0.300 3.700 7 O -0.416 6.416 8 C 0.280 3.720 9 O -0.406 6.406 10 N -0.266 5.266 11 C -0.045 4.045 12 C -0.091 4.091 13 C -0.199 4.199 14 C 0.062 3.938 15 O -0.130 6.130 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.219 4.219 19 N -0.554 5.554 20 Si 0.837 3.163 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.247 4.247 25 C -0.088 4.088 26 C -0.188 4.188 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.257 0.743 35 H 0.268 0.732 36 H 0.182 0.818 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.107 0.893 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.987 -11.080 -18.160 29.190 hybrid contribution 0.907 0.571 0.055 1.073 sum -19.081 -10.510 -18.105 28.326 Atomic orbital electron populations 1.21662 0.93214 1.02510 1.02268 1.22155 0.96298 0.96948 0.96971 1.23444 1.02959 0.98261 0.92661 1.22993 0.88441 0.94362 0.93784 1.45853 1.15202 1.58717 1.13203 1.19761 0.87550 0.79199 0.83506 1.90756 1.29733 1.56694 1.64427 1.20490 0.89194 0.79375 0.82908 1.90776 1.30361 1.55621 1.63890 1.42792 1.10676 1.58972 1.14173 1.17375 0.90139 1.04859 0.92112 1.20781 0.97272 0.98761 0.92261 1.20307 0.93608 1.05633 1.00370 1.19968 0.87757 0.94082 0.92025 1.83935 1.27312 1.62758 1.39036 1.21842 1.03343 1.30270 0.93482 0.88196 1.26552 0.99448 0.98385 0.97469 1.70175 1.29765 1.44248 1.11241 0.84546 0.76629 0.77234 0.77922 1.17687 1.19226 1.19326 1.21106 1.00857 1.08726 0.94057 1.20942 0.92703 0.95088 1.00071 1.23542 1.02203 0.95017 0.98030 0.91339 0.91745 0.92922 0.88767 0.89750 0.88330 0.87241 0.74255 0.73180 0.81828 0.85138 0.91758 0.86005 0.84889 0.89263 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.59 71.98 0.69 -0.36 16 2 C -0.10 -0.85 4.55 -10.27 -0.05 -0.90 16 3 C -0.14 -1.18 7.42 31.12 0.23 -0.95 16 4 C 0.11 1.46 3.89 45.52 0.18 1.63 16 5 N -0.68 -11.57 5.35 -441.51 -2.36 -13.94 16 6 C 0.52 11.82 7.88 87.23 0.69 12.51 16 7 O -0.54 -13.88 16.08 -3.29 -0.05 -13.93 16 8 C 0.50 13.40 7.73 87.23 0.67 14.07 16 9 O -0.53 -16.80 13.91 -3.39 -0.05 -16.84 16 10 N -0.62 -16.39 5.32 -304.73 -1.62 -18.01 16 11 C 0.05 1.60 6.30 38.25 0.24 1.85 16 12 C -0.07 -2.29 9.96 22.39 0.22 -2.07 16 13 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 14 C 0.11 5.56 6.65 22.60 0.15 5.71 16 15 O -0.22 -13.33 9.75 -22.50 -0.22 -13.55 16 16 C -0.41 -24.01 9.48 67.92 0.64 -23.36 16 17 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 18 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 19 N -0.92 -55.72 13.67 21.61 0.30 -55.42 16 20 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 C -0.23 -10.27 9.16 22.37 0.20 -10.06 16 25 C -0.07 -2.62 8.69 22.39 0.19 -2.43 16 26 C -0.15 -1.71 7.44 31.12 0.23 -1.47 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.47 7.34 -2.39 -0.02 0.45 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.66 8.10 -2.39 -0.02 0.65 16 32 H 0.10 0.72 8.12 -2.38 -0.02 0.70 16 33 H 0.11 1.73 6.98 -2.39 -0.02 1.72 16 34 H 0.42 6.33 8.20 -92.70 -0.76 5.57 16 35 H 0.43 9.12 8.30 -92.71 -0.77 8.35 16 36 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.12 5.62 5.63 -2.91 -0.02 5.61 16 40 H 0.13 4.92 6.22 -2.91 -0.02 4.90 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 Total: -1.00 -72.62 358.33 2.57 -70.05 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.45 Total: 30.31 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.99 Total: -13.62 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.69 Total: -87.37 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.32 Total: -44.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.62 2.57 -70.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318981139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.786 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds