Wall clock time and date at job start Tue Mar 31 2020 12:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 115.55002 * 2 1 4 4 N 1.46498 * 109.46815 * 279.51601 * 3 2 1 5 5 C 1.34779 * 119.99539 * 184.95437 * 4 3 2 6 6 O 1.21365 * 120.00286 * 0.02562 * 5 4 3 7 7 C 1.49328 * 119.99788 * 180.02562 * 5 4 3 8 8 O 1.21388 * 119.99884 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99788 * 180.02562 * 7 5 4 10 10 C 1.39741 * 119.99572 * 184.50804 * 9 7 5 11 11 C 1.39001 * 120.00836 * 323.90797 * 10 9 7 12 12 C 1.37968 * 119.99001 * 179.78751 * 11 10 9 13 13 C 1.38937 * 120.00751 * 0.48641 * 12 11 10 14 14 O 1.35756 * 119.99440 * 179.71844 * 13 12 11 15 15 C 1.34803 * 117.00320 * 183.51609 * 14 13 12 16 16 H 1.08003 * 119.99988 * 354.76744 * 15 14 13 17 17 C 1.38651 * 120.00050 * 174.76830 * 15 14 13 18 18 N 1.31562 * 119.99814 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00087 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99999 * 19 17 15 21 21 H 1.48503 * 109.47142 * 209.99974 * 19 17 15 22 22 H 1.48502 * 109.47082 * 329.99786 * 19 17 15 23 23 C 1.38940 * 120.01320 * 359.74345 * 13 12 11 24 24 C 1.37964 * 120.00755 * 0.02562 * 23 13 12 25 25 C 1.53005 * 117.51773 * 145.70024 * 2 1 3 26 26 C 1.53001 * 117.49704 * 214.32871 * 2 1 3 27 27 H 1.08999 * 109.46884 * 55.74609 * 1 2 3 28 28 H 1.09000 * 109.47246 * 175.74762 * 1 2 3 29 29 H 1.09004 * 109.47063 * 295.74775 * 1 2 3 30 30 H 1.09000 * 109.47029 * 159.51752 * 3 2 1 31 31 H 1.08992 * 109.47138 * 39.51881 * 3 2 1 32 32 H 0.96995 * 120.00373 * 4.95175 * 4 3 2 33 33 H 0.96993 * 119.99841 * 4.78808 * 9 7 5 34 34 H 1.07993 * 120.00003 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.99528 * 180.22744 * 12 11 10 36 36 H 0.97000 * 119.99984 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99600 * 180.02562 * 23 13 12 38 38 H 1.07999 * 120.00408 * 179.97438 * 24 23 13 39 39 H 1.08991 * 117.49877 * 214.96994 * 25 2 1 40 40 H 1.08998 * 117.49677 * 359.97438 * 25 2 1 41 41 H 1.09005 * 117.49927 * 359.97438 * 26 2 1 42 42 H 1.08993 * 117.49976 * 145.00124 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1945 1.9194 -1.3622 5 6 2.8170 3.0859 -1.6232 6 8 3.3741 3.6896 -0.7298 7 6 2.8212 3.6357 -3.0116 8 8 2.2643 3.0316 -3.9052 9 7 3.4441 4.8020 -3.2726 10 6 3.3684 5.3638 -4.5499 11 6 3.3651 4.5427 -5.6714 12 6 3.2860 5.0976 -6.9321 13 6 3.2198 6.4774 -7.0811 14 8 3.1477 7.0233 -8.3220 15 6 3.1596 8.3690 -8.4002 16 1 3.1389 8.9626 -7.4981 17 6 3.1983 8.9912 -9.6387 18 7 3.2093 10.3045 -9.7150 19 14 3.2334 7.9646 -11.1989 20 1 1.8432 7.7032 -11.6508 21 1 3.9684 8.7002 -12.2590 22 1 3.9165 6.6743 -10.9272 23 6 3.2279 7.2986 -5.9604 24 6 3.3022 6.7441 -4.6993 25 6 2.2369 -1.1210 0.7647 26 6 2.2364 -1.1208 -0.7654 27 1 -0.3633 0.5784 -0.8494 28 1 -0.3634 -1.0248 -0.0762 29 1 -0.3633 0.4464 0.9257 30 1 3.2152 1.2929 0.3596 31 1 1.6314 2.0500 0.6539 32 1 1.7496 1.4367 -2.0763 33 1 3.9482 5.2493 -2.5751 34 1 3.4215 3.4705 -5.5558 35 1 3.2798 4.4595 -7.8035 36 1 3.2368 10.7398 -10.5814 37 1 3.1760 8.3711 -6.0765 38 1 3.3089 7.3825 -3.8282 39 1 3.1721 -0.8750 1.2677 40 1 1.6120 -1.8585 1.2683 41 1 1.6111 -1.8584 -1.2685 42 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319133609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:59 Heat of formation + Delta-G solvation = -40.314298 kcal Electronic energy + Delta-G solvation = -25100.166208 eV Core-core repulsion = 21240.239324 eV Total energy + Delta-G solvation = -3859.926885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96575 -39.61689 -38.86676 -38.22962 -36.75618 -34.80612 -33.85095 -32.37681 -30.38500 -29.35742 -28.67085 -27.51128 -25.46375 -24.04741 -22.91743 -22.42026 -21.24410 -20.39418 -19.86093 -18.61134 -17.95150 -17.48398 -16.93872 -16.34771 -16.26259 -15.96728 -15.36471 -14.90353 -14.81391 -14.33747 -14.08840 -13.87191 -13.80816 -13.72173 -13.50895 -13.09552 -12.88037 -12.68628 -12.39024 -12.33536 -12.03295 -11.97838 -11.75597 -11.71686 -11.57979 -10.96653 -10.85856 -10.78330 -10.39436 -10.21412 -9.79709 -9.62958 -9.54789 -9.37389 -8.83468 -8.36704 -7.16154 -6.46233 -4.12075 1.19562 2.02465 2.06002 2.27263 3.13313 3.19002 3.21836 3.24209 3.38449 3.65499 4.07361 4.20495 4.20653 4.33498 4.41761 4.43874 4.47371 4.81424 5.06122 5.06699 5.16742 5.18853 5.34945 5.37483 5.44003 5.44017 5.51174 5.62620 5.64615 5.75130 5.88966 5.94508 6.02843 6.08185 6.56492 6.67370 6.68465 6.90920 6.98954 7.15918 7.37990 7.49263 7.64737 7.72924 7.94620 8.03106 8.88525 9.49934 10.60936 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.002116 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.477394 B =13229.312826 C =13716.427715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.152 4.152 3 C 0.155 3.845 4 N -0.698 5.698 5 C 0.511 3.489 6 O -0.522 6.522 7 C 0.498 3.502 8 O -0.509 6.509 9 N -0.625 5.625 10 C 0.031 3.969 11 C -0.065 4.065 12 C -0.179 4.179 13 C 0.157 3.843 14 O -0.212 6.212 15 C -0.390 4.390 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.876 5.876 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.208 4.208 24 C -0.082 4.082 25 C -0.161 4.161 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.415 0.585 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.280 0.720 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -19.904 19.239 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.152 4.152 3 C 0.032 3.968 4 N -0.352 5.352 5 C 0.291 3.709 6 O -0.398 6.398 7 C 0.279 3.721 8 O -0.385 6.385 9 N -0.271 5.271 10 C -0.061 4.061 11 C -0.085 4.085 12 C -0.199 4.199 13 C 0.104 3.896 14 O -0.117 6.117 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.227 4.227 24 C -0.102 4.102 25 C -0.199 4.199 26 C -0.207 4.207 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.252 0.748 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.164 -19.792 18.901 27.453 hybrid contribution 0.008 -0.103 -0.550 0.560 sum -2.156 -19.895 18.351 27.152 Atomic orbital electron populations 1.21343 0.91209 1.02301 1.02470 1.21715 0.95545 0.90318 1.07618 1.20929 1.01003 0.92055 0.82771 1.45731 1.54976 1.22342 1.12113 1.20151 0.79661 0.81889 0.89160 1.90768 1.43462 1.58693 1.46896 1.20025 0.80431 0.82857 0.88787 1.90771 1.43451 1.58070 1.46197 1.42864 1.49545 1.22165 1.12519 1.17291 1.13864 0.92039 0.82907 1.20708 0.98116 0.99431 0.90253 1.20121 1.10537 0.92162 0.97113 1.19197 0.93267 0.92058 0.85115 1.83576 1.80019 1.24137 1.23966 1.20780 1.52211 0.77137 0.96455 0.87505 1.24485 0.95528 0.95401 0.98585 1.69646 1.47519 1.07539 1.26675 0.86169 0.78988 0.80674 0.81037 1.19818 1.20781 1.18269 1.21110 1.09276 1.01181 0.91152 1.20582 1.00015 0.92278 0.97336 1.23062 1.02191 0.99935 0.94668 1.23090 1.02594 1.00425 0.94569 0.91794 0.92068 0.91822 0.90583 0.90447 0.74868 0.74838 0.85199 0.85948 0.90963 0.84263 0.86543 0.88400 0.88260 0.88257 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.72 37.16 0.36 -0.25 16 2 C -0.15 -0.88 2.11 -154.51 -0.33 -1.21 16 3 C 0.16 1.17 5.58 -4.04 -0.02 1.15 16 4 N -0.70 -6.46 5.51 -60.77 -0.33 -6.79 16 5 C 0.51 6.15 7.88 -11.64 -0.09 6.06 16 6 O -0.52 -7.18 16.48 5.48 0.09 -7.09 16 7 C 0.50 6.95 7.72 -11.64 -0.09 6.86 16 8 O -0.51 -8.09 13.97 5.46 0.08 -8.02 16 9 N -0.63 -8.84 5.31 -10.26 -0.05 -8.90 16 10 C 0.03 0.53 6.28 -83.69 -0.53 0.01 16 11 C -0.07 -1.18 8.68 -39.40 -0.34 -1.53 16 12 C -0.18 -3.59 9.98 -39.42 -0.39 -3.98 16 13 C 0.16 3.55 6.65 -39.06 -0.26 3.29 16 14 O -0.21 -5.50 8.58 0.11 0.00 -5.50 16 15 C -0.39 -10.77 9.94 30.88 0.31 -10.46 16 16 H 0.11 2.98 5.42 -52.48 -0.28 2.70 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -24.90 13.96 55.48 0.77 -24.12 16 19 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.21 -4.32 9.16 -39.42 -0.36 -4.68 16 24 C -0.08 -1.44 9.96 -39.40 -0.39 -1.83 16 25 C -0.16 -0.79 9.90 -26.73 -0.26 -1.06 16 26 C -0.17 -0.94 9.90 -26.73 -0.26 -1.20 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.28 8.10 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.60 7.94 -51.93 -0.41 0.18 16 31 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.41 3.57 7.95 -40.82 -0.32 3.24 16 33 H 0.42 5.00 8.30 -40.82 -0.34 4.66 16 34 H 0.13 2.24 6.30 -52.49 -0.33 1.90 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 36 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.14 3.01 5.61 -52.48 -0.29 2.72 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -30.65 363.68 -6.93 -37.59 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.34 Total: 8.01 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.76 Total: -7.18 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.39 Total: -39.81 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.65 -6.93 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319133609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.729 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds