Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 115.55002 * 2 1 4 4 N 1.46498 * 109.46815 * 279.51601 * 3 2 1 5 5 C 1.34779 * 119.99539 * 184.95437 * 4 3 2 6 6 O 1.21365 * 120.00286 * 0.02562 * 5 4 3 7 7 C 1.49328 * 119.99788 * 180.02562 * 5 4 3 8 8 O 1.21388 * 119.99884 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99788 * 180.02562 * 7 5 4 10 10 C 1.39741 * 119.99572 * 184.50804 * 9 7 5 11 11 C 1.39001 * 120.00836 * 323.90797 * 10 9 7 12 12 C 1.37968 * 119.99001 * 179.78751 * 11 10 9 13 13 C 1.38937 * 120.00751 * 0.48641 * 12 11 10 14 14 O 1.35756 * 119.99440 * 179.71844 * 13 12 11 15 15 C 1.34803 * 117.00320 * 183.51609 * 14 13 12 16 16 H 1.08003 * 119.99988 * 354.76744 * 15 14 13 17 17 C 1.38651 * 120.00050 * 174.76830 * 15 14 13 18 18 N 1.31562 * 119.99814 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00087 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99999 * 19 17 15 21 21 H 1.48503 * 109.47142 * 209.99974 * 19 17 15 22 22 H 1.48502 * 109.47082 * 329.99786 * 19 17 15 23 23 C 1.38940 * 120.01320 * 359.74345 * 13 12 11 24 24 C 1.37964 * 120.00755 * 0.02562 * 23 13 12 25 25 C 1.53005 * 117.51773 * 145.70024 * 2 1 3 26 26 C 1.53001 * 117.49704 * 214.32871 * 2 1 3 27 27 H 1.08999 * 109.46884 * 55.74609 * 1 2 3 28 28 H 1.09000 * 109.47246 * 175.74762 * 1 2 3 29 29 H 1.09004 * 109.47063 * 295.74775 * 1 2 3 30 30 H 1.09000 * 109.47029 * 159.51752 * 3 2 1 31 31 H 1.08992 * 109.47138 * 39.51881 * 3 2 1 32 32 H 0.96995 * 120.00373 * 4.95175 * 4 3 2 33 33 H 0.96993 * 119.99841 * 4.78808 * 9 7 5 34 34 H 1.07993 * 120.00003 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.99528 * 180.22744 * 12 11 10 36 36 H 0.97000 * 119.99984 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99600 * 180.02562 * 23 13 12 38 38 H 1.07999 * 120.00408 * 179.97438 * 24 23 13 39 39 H 1.08991 * 117.49877 * 214.96994 * 25 2 1 40 40 H 1.08998 * 117.49677 * 359.97438 * 25 2 1 41 41 H 1.09005 * 117.49927 * 359.97438 * 26 2 1 42 42 H 1.08993 * 117.49976 * 145.00124 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1945 1.9194 -1.3622 5 6 2.8170 3.0859 -1.6232 6 8 3.3741 3.6896 -0.7298 7 6 2.8212 3.6357 -3.0116 8 8 2.2643 3.0316 -3.9052 9 7 3.4441 4.8020 -3.2726 10 6 3.3684 5.3638 -4.5499 11 6 3.3651 4.5427 -5.6714 12 6 3.2860 5.0976 -6.9321 13 6 3.2198 6.4774 -7.0811 14 8 3.1477 7.0233 -8.3220 15 6 3.1596 8.3690 -8.4002 16 1 3.1389 8.9626 -7.4981 17 6 3.1983 8.9912 -9.6387 18 7 3.2093 10.3045 -9.7150 19 14 3.2334 7.9646 -11.1989 20 1 1.8432 7.7032 -11.6508 21 1 3.9684 8.7002 -12.2590 22 1 3.9165 6.6743 -10.9272 23 6 3.2279 7.2986 -5.9604 24 6 3.3022 6.7441 -4.6993 25 6 2.2369 -1.1210 0.7647 26 6 2.2364 -1.1208 -0.7654 27 1 -0.3633 0.5784 -0.8494 28 1 -0.3634 -1.0248 -0.0762 29 1 -0.3633 0.4464 0.9257 30 1 3.2152 1.2929 0.3596 31 1 1.6314 2.0500 0.6539 32 1 1.7496 1.4367 -2.0763 33 1 3.9482 5.2493 -2.5751 34 1 3.4215 3.4705 -5.5558 35 1 3.2798 4.4595 -7.8035 36 1 3.2368 10.7398 -10.5814 37 1 3.1760 8.3711 -6.0765 38 1 3.3089 7.3825 -3.8282 39 1 3.1721 -0.8750 1.2677 40 1 1.6120 -1.8585 1.2683 41 1 1.6111 -1.8584 -1.2685 42 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319133609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = -60.534961 kcal Electronic energy + Delta-G solvation = -25101.043042 eV Core-core repulsion = 21240.239324 eV Total energy + Delta-G solvation = -3860.803718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10642 -40.94125 -40.07245 -39.03057 -38.28659 -35.90847 -34.98166 -34.35696 -31.95920 -30.24344 -29.70657 -28.35337 -27.26469 -25.21357 -24.00425 -23.37652 -22.62184 -21.45593 -20.72143 -19.83134 -19.45845 -19.14713 -18.22941 -17.50819 -17.19818 -16.79805 -16.59305 -16.20447 -15.83256 -15.75071 -15.60689 -15.35895 -15.00971 -14.78053 -14.50612 -14.18385 -14.11351 -13.98974 -13.72017 -13.54716 -13.31950 -13.12444 -12.85522 -12.73203 -12.53333 -12.36362 -12.23507 -11.98887 -11.44217 -11.25839 -11.18821 -10.93534 -10.73736 -10.60745 -10.34442 -9.91481 -8.78066 -8.49243 -6.20877 0.03060 0.46868 0.64267 1.20103 1.33739 1.37447 1.53361 2.04657 2.29047 2.44906 2.73577 2.90821 3.01586 3.13298 3.35221 3.58566 3.76022 3.95136 3.99272 4.03820 4.06746 4.41963 4.50093 4.54356 4.62488 4.63998 4.80130 4.90975 4.93098 4.99398 5.04924 5.05987 5.11602 5.11962 5.26401 5.27542 5.34208 5.39886 5.48974 5.73736 5.79518 5.93012 6.13918 6.28403 6.66612 6.84773 6.85740 7.57418 8.61654 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.002116 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.477394 B =13229.312826 C =13716.427715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.155 4.155 3 C 0.154 3.846 4 N -0.682 5.682 5 C 0.517 3.483 6 O -0.539 6.539 7 C 0.502 3.498 8 O -0.526 6.526 9 N -0.622 5.622 10 C 0.058 3.942 11 C -0.067 4.067 12 C -0.175 4.175 13 C 0.120 3.880 14 O -0.240 6.240 15 C -0.399 4.399 16 H 0.087 0.913 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.215 4.215 24 C -0.077 4.077 25 C -0.153 4.153 26 C -0.173 4.173 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.419 0.581 33 H 0.428 0.572 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.285 0.715 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -22.643 21.102 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.032 3.968 4 N -0.335 5.335 5 C 0.297 3.703 6 O -0.417 6.417 7 C 0.284 3.716 8 O -0.402 6.402 9 N -0.269 5.269 10 C -0.035 4.035 11 C -0.087 4.087 12 C -0.194 4.194 13 C 0.070 3.930 14 O -0.147 6.147 15 C -0.475 4.475 16 H 0.104 0.896 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.235 4.235 24 C -0.097 4.097 25 C -0.190 4.190 26 C -0.210 4.210 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.257 0.743 33 H 0.267 0.733 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.333 -22.584 20.828 30.811 hybrid contribution 0.045 0.500 -0.749 0.902 sum -2.288 -22.084 20.079 29.935 Atomic orbital electron populations 1.21345 0.90745 1.02805 1.02346 1.21665 0.95799 0.89486 1.08614 1.21066 1.01262 0.93017 0.81489 1.45762 1.53449 1.21166 1.13133 1.19713 0.80162 0.82556 0.87835 1.90777 1.44628 1.59407 1.46867 1.20395 0.79439 0.82187 0.89542 1.90770 1.43927 1.58456 1.47031 1.42822 1.50015 1.22435 1.11651 1.17397 1.10214 0.91865 0.84056 1.20916 0.97686 1.00294 0.89806 1.20335 1.09460 0.91144 0.98489 1.19661 0.95135 0.93348 0.84808 1.83524 1.82804 1.22792 1.25580 1.20739 1.52478 0.78174 0.96130 0.89560 1.25258 0.95521 0.96469 1.01515 1.69724 1.49838 1.08856 1.27590 0.85249 0.79213 0.78904 0.77590 1.19188 1.19339 1.18630 1.21142 1.09638 1.00470 0.92261 1.20820 0.98749 0.93035 0.97096 1.23146 1.02273 0.99296 0.94324 1.23124 1.02369 1.00372 0.95140 0.92463 0.91194 0.91520 0.90611 0.90342 0.74322 0.73264 0.83704 0.84822 0.90565 0.85899 0.83144 0.88101 0.87126 0.87599 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.72 71.98 0.70 -0.26 16 2 C -0.16 -1.44 2.11 -52.18 -0.11 -1.55 16 3 C 0.15 1.97 5.58 86.38 0.48 2.45 16 4 N -0.68 -11.03 5.51 -464.55 -2.56 -13.59 16 5 C 0.52 11.17 7.88 87.23 0.69 11.86 16 6 O -0.54 -13.49 16.48 -3.29 -0.05 -13.55 16 7 C 0.50 12.65 7.72 87.23 0.67 13.33 16 8 O -0.53 -15.31 13.97 -3.37 -0.05 -15.36 16 9 N -0.62 -15.75 5.31 -304.73 -1.62 -17.37 16 10 C 0.06 1.83 6.28 38.24 0.24 2.07 16 11 C -0.07 -2.30 8.68 22.39 0.19 -2.10 16 12 C -0.17 -6.83 9.98 22.37 0.22 -6.61 16 13 C 0.12 5.53 6.65 22.61 0.15 5.68 16 14 O -0.24 -12.80 8.58 -22.53 -0.19 -12.99 16 15 C -0.40 -22.98 9.94 67.92 0.68 -22.31 16 16 H 0.09 5.14 5.42 -2.91 -0.02 5.12 16 17 C 0.01 0.64 5.49 84.83 0.47 1.11 16 18 N -0.92 -54.11 13.96 21.61 0.30 -53.80 16 19 Si 0.97 44.95 28.62 68.60 1.96 46.91 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.22 -9.07 9.16 22.37 0.20 -8.87 16 24 C -0.08 -2.57 9.96 22.39 0.22 -2.35 16 25 C -0.15 -1.12 9.90 30.60 0.30 -0.82 16 26 C -0.17 -1.52 9.90 30.60 0.30 -1.22 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.47 8.10 -2.39 -0.02 0.45 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 1.02 7.94 -2.39 -0.02 1.00 16 31 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.42 6.22 7.95 -92.71 -0.74 5.48 16 33 H 0.43 8.95 8.30 -92.71 -0.77 8.18 16 34 H 0.15 4.58 6.30 -2.91 -0.02 4.56 16 35 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.12 5.58 5.61 -2.91 -0.02 5.56 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.09 363.68 2.78 -64.31 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.43 Total: 25.03 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.42 Total: -9.59 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.88 Total: -84.77 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.29 Total: -41.89 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.91 kcal Total: -67.09 2.78 -64.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319133609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.775 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds