Wall clock time and date at job start Tue Mar 31 2020 13:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 112.77600 * 2 1 4 4 C 1.53489 * 113.46867 * 229.21567 * 2 1 3 5 5 C 1.53491 * 83.34614 * 271.28825 * 4 2 1 6 6 N 1.47067 * 113.46688 * 130.77741 * 2 1 3 7 7 C 1.34779 * 136.05821 * 267.92382 * 6 2 1 8 8 O 1.21365 * 119.99592 * 359.62261 * 7 6 2 9 9 C 1.49314 * 120.00005 * 179.62553 * 7 6 2 10 10 O 1.21393 * 119.99862 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99962 * 179.97438 * 9 7 6 12 12 C 1.39743 * 119.99966 * 174.79215 * 11 9 7 13 13 C 1.38995 * 120.00904 * 326.09231 * 12 11 9 14 14 C 1.37964 * 119.99373 * 179.74126 * 13 12 11 15 15 C 1.38933 * 120.00649 * 0.50041 * 14 13 12 16 16 O 1.35762 * 119.99386 * 179.74525 * 15 14 13 17 17 C 1.34802 * 116.99811 * 185.94620 * 16 15 14 18 18 H 1.08000 * 120.00193 * 5.40557 * 17 16 15 19 19 C 1.38651 * 119.99829 * 185.40459 * 17 16 15 20 20 N 1.31565 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46644 * 60.00034 * 21 19 17 23 23 H 1.48495 * 109.46869 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46822 * 300.00152 * 21 19 17 25 25 C 1.38933 * 120.01401 * 359.77501 * 15 14 13 26 26 C 1.37972 * 120.00967 * 359.97101 * 25 15 14 27 27 H 1.09002 * 109.47732 * 308.72818 * 1 2 3 28 28 H 1.09003 * 109.47335 * 68.72622 * 1 2 3 29 29 H 1.09001 * 109.47274 * 188.72050 * 1 2 3 30 30 H 1.08999 * 109.46695 * 171.27697 * 3 2 1 31 31 H 1.08998 * 109.46923 * 291.27561 * 3 2 1 32 32 H 1.09004 * 109.47483 * 51.27286 * 3 2 1 33 33 H 1.09003 * 114.20518 * 157.70013 * 4 2 1 34 34 H 1.09001 * 114.38984 * 24.88767 * 4 2 1 35 35 H 1.09005 * 113.47059 * 219.15855 * 5 4 2 36 36 H 1.08995 * 113.47153 * 88.70915 * 5 4 2 37 37 H 0.96998 * 120.00162 * 354.79931 * 11 9 7 38 38 H 1.08000 * 120.00231 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.99649 * 180.24783 * 14 13 12 40 40 H 0.96997 * 120.00420 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99997 * 179.97438 * 25 15 14 42 42 H 1.07998 * 120.00813 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1223 1.4107 0.0000 4 6 2.1413 -0.9197 -1.0660 5 6 2.0390 -1.9761 0.0428 6 7 2.1156 -0.8811 1.0216 7 6 2.5332 -0.7459 2.2959 8 8 2.4622 0.3334 2.8464 9 6 3.0831 -1.9239 3.0303 10 8 3.1545 -3.0033 2.4794 11 7 3.5011 -1.7886 4.3044 12 6 3.9137 -2.9111 5.0273 13 6 3.3024 -4.1406 4.8110 14 6 3.7136 -5.2497 5.5211 15 6 4.7315 -5.1356 6.4597 16 8 5.1324 -6.2261 7.1620 17 6 6.0360 -6.0248 8.1419 18 1 6.3420 -5.0208 8.3963 19 6 6.5725 -7.1067 8.8231 20 7 6.2001 -8.3298 8.5129 21 14 7.8253 -6.8278 10.1805 22 1 7.2188 -5.9952 11.2502 23 1 8.2411 -8.1361 10.7467 24 1 9.0120 -6.1305 9.6231 25 6 5.3388 -3.9057 6.6804 26 6 4.9317 -2.7972 5.9669 27 1 -0.3635 0.6429 0.8017 28 1 -0.3634 0.3729 -0.9576 29 1 -0.3634 -1.0158 0.1558 30 1 3.1995 1.3524 0.1559 31 1 1.9191 1.8900 -0.9576 32 1 1.6702 1.9947 0.8017 33 1 3.1630 -0.6625 -1.3455 34 1 1.4945 -1.1073 -1.9231 35 1 2.8939 -2.6514 0.0792 36 1 1.0846 -2.5024 0.0542 37 1 3.5155 -0.9122 4.7197 38 1 2.5082 -4.2284 4.0844 39 1 3.2414 -6.2058 5.3501 40 1 6.5757 -9.0867 8.9892 41 1 6.1298 -3.8172 7.4104 42 1 5.4035 -1.8411 6.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320715593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:42 Heat of formation + Delta-G solvation = -21.440818 kcal Electronic energy + Delta-G solvation = -25755.771669 eV Core-core repulsion = 21896.663200 eV Total energy + Delta-G solvation = -3859.108469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34202 -40.06825 -38.79433 -37.91432 -36.57317 -34.06370 -32.22805 -32.04192 -30.29155 -29.85537 -28.27729 -27.88040 -25.59422 -24.64632 -23.36678 -22.38949 -21.79694 -20.51287 -19.01678 -18.07273 -17.62283 -17.31704 -16.67318 -16.26553 -16.11471 -15.52672 -15.30597 -14.61955 -14.49714 -14.40758 -13.94240 -13.83306 -13.58975 -13.42687 -12.97157 -12.85842 -12.82222 -12.56248 -12.50880 -12.22205 -11.98731 -11.93475 -11.69189 -11.65984 -11.64104 -11.39306 -11.06940 -10.72524 -10.66697 -10.47306 -9.79907 -9.50450 -9.27047 -9.09936 -8.75858 -8.27227 -7.00000 -6.48349 -4.06116 1.29620 2.01514 2.13738 2.31731 3.11575 3.12080 3.15675 3.24357 3.35569 3.89347 3.94251 4.34036 4.44176 4.51888 4.53584 4.55015 4.88004 5.02110 5.06911 5.20187 5.24526 5.25478 5.37825 5.45409 5.48499 5.51412 5.61014 5.62936 5.69868 5.81881 5.94746 6.04678 6.13719 6.17693 6.71594 6.75383 6.84208 7.05496 7.15482 7.25930 7.30572 7.42877 7.67525 7.75393 7.95665 8.12256 8.96649 9.65938 10.69239 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037949 B = 0.002290 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.664308 B =12224.784455 C =12632.369079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 C -0.148 4.148 4 C -0.150 4.150 5 C 0.104 3.896 6 N -0.615 5.615 7 C 0.538 3.462 8 O -0.523 6.523 9 C 0.499 3.501 10 O -0.505 6.505 11 N -0.626 5.626 12 C 0.027 3.973 13 C -0.064 4.064 14 C -0.178 4.178 15 C 0.149 3.851 16 O -0.173 6.173 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.219 4.219 26 C -0.082 4.082 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.271 0.729 41 H 0.133 0.867 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 16.164 -17.075 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 C -0.205 4.205 4 C -0.188 4.188 5 C -0.018 4.018 6 N -0.351 5.351 7 C 0.323 3.677 8 O -0.399 6.399 9 C 0.280 3.720 10 O -0.380 6.380 11 N -0.272 5.272 12 C -0.065 4.065 13 C -0.084 4.084 14 C -0.197 4.197 15 C 0.095 3.905 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.102 4.102 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.249 0.751 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.725 15.508 -16.867 24.518 hybrid contribution 0.673 0.587 1.002 1.343 sum -8.052 16.095 -15.865 23.991 Atomic orbital electron populations 1.21983 0.92562 1.03148 1.03120 1.22129 0.94236 0.92669 0.83884 1.21922 1.01502 0.94559 1.02550 1.23572 1.02668 0.96178 0.96361 1.23062 1.03641 0.91590 0.83542 1.49648 1.59947 1.15294 1.10250 1.19745 0.79087 0.88781 0.80100 1.90747 1.55431 1.27797 1.65885 1.19961 0.80531 0.88840 0.82631 1.90761 1.53087 1.27397 1.66788 1.42890 1.62123 1.10892 1.11313 1.17220 1.01577 0.87103 1.00579 1.20564 0.98554 0.90907 0.98351 1.20092 1.00428 0.98907 1.00309 1.19443 0.92697 0.87526 0.90828 1.83995 1.53428 1.28213 1.41942 1.21284 1.20400 0.94692 1.10489 0.89051 1.25309 0.98084 0.94302 0.98811 1.70029 1.41255 0.98094 1.40057 0.85771 0.79790 0.78034 0.79797 1.19447 1.20255 1.19470 1.20987 1.05013 0.92334 1.05515 1.20502 0.94819 0.98379 0.96542 0.91582 0.90483 0.91562 0.91913 0.91120 0.91488 0.88464 0.88795 0.88794 0.89276 0.75067 0.85878 0.85952 0.91870 0.84907 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.27 37.16 0.34 -0.62 16 2 C 0.15 1.22 1.59 -136.30 -0.22 1.01 16 3 C -0.15 -1.16 8.73 37.16 0.32 -0.84 16 4 C -0.15 -0.89 7.61 -26.22 -0.20 -1.09 16 5 C 0.10 0.89 7.24 -8.52 -0.06 0.83 16 6 N -0.62 -6.80 3.37 -170.51 -0.57 -7.38 16 7 C 0.54 7.49 8.04 -11.65 -0.09 7.40 16 8 O -0.52 -7.99 16.69 5.48 0.09 -7.90 16 9 C 0.50 7.75 7.62 -11.65 -0.09 7.66 16 10 O -0.51 -8.75 12.92 5.46 0.07 -8.68 16 11 N -0.63 -9.67 5.32 -10.27 -0.05 -9.72 16 12 C 0.03 0.50 6.27 -83.69 -0.52 -0.03 16 13 C -0.06 -1.25 8.64 -39.40 -0.34 -1.59 16 14 C -0.18 -3.85 9.98 -39.42 -0.39 -4.24 16 15 C 0.15 3.60 6.65 -39.07 -0.26 3.34 16 16 O -0.17 -4.89 9.75 0.09 0.00 -4.89 16 17 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16 18 H 0.09 2.30 5.29 -52.49 -0.28 2.03 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 21 Si 0.94 20.26 29.55 -169.99 -5.02 15.23 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.22 -4.67 9.12 -39.42 -0.36 -5.03 16 26 C -0.08 -1.50 9.96 -39.40 -0.39 -1.90 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.42 7.04 -51.93 -0.37 0.06 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 35 H 0.09 0.93 7.40 -51.93 -0.38 0.54 16 36 H 0.09 0.65 7.30 -51.93 -0.38 0.28 16 37 H 0.41 5.48 8.30 -40.82 -0.34 5.14 16 38 H 0.12 2.29 6.45 -52.49 -0.34 1.95 16 39 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.79 5.71 -52.48 -0.30 2.49 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -32.82 357.11 -6.74 -39.55 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.32 Total: 7.27 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.07 Total: -4.63 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.13 Total: -41.35 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.16 Total: -21.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.82 -6.74 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320715593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.112 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds