Wall clock time and date at job start Tue Mar 31 2020 13:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 112.77600 * 2 1 4 4 C 1.53489 * 113.46867 * 229.21567 * 2 1 3 5 5 C 1.53491 * 83.34614 * 271.28825 * 4 2 1 6 6 N 1.47067 * 113.46688 * 130.77741 * 2 1 3 7 7 C 1.34779 * 136.05821 * 267.92382 * 6 2 1 8 8 O 1.21365 * 119.99592 * 359.62261 * 7 6 2 9 9 C 1.49314 * 120.00005 * 179.62553 * 7 6 2 10 10 O 1.21393 * 119.99862 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99962 * 179.97438 * 9 7 6 12 12 C 1.39743 * 119.99966 * 174.79215 * 11 9 7 13 13 C 1.38995 * 120.00904 * 326.09231 * 12 11 9 14 14 C 1.37964 * 119.99373 * 179.74126 * 13 12 11 15 15 C 1.38933 * 120.00649 * 0.50041 * 14 13 12 16 16 O 1.35762 * 119.99386 * 179.74525 * 15 14 13 17 17 C 1.34802 * 116.99811 * 185.94620 * 16 15 14 18 18 H 1.08000 * 120.00193 * 5.40557 * 17 16 15 19 19 C 1.38651 * 119.99829 * 185.40459 * 17 16 15 20 20 N 1.31565 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46644 * 60.00034 * 21 19 17 23 23 H 1.48495 * 109.46869 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46822 * 300.00152 * 21 19 17 25 25 C 1.38933 * 120.01401 * 359.77501 * 15 14 13 26 26 C 1.37972 * 120.00967 * 359.97101 * 25 15 14 27 27 H 1.09002 * 109.47732 * 308.72818 * 1 2 3 28 28 H 1.09003 * 109.47335 * 68.72622 * 1 2 3 29 29 H 1.09001 * 109.47274 * 188.72050 * 1 2 3 30 30 H 1.08999 * 109.46695 * 171.27697 * 3 2 1 31 31 H 1.08998 * 109.46923 * 291.27561 * 3 2 1 32 32 H 1.09004 * 109.47483 * 51.27286 * 3 2 1 33 33 H 1.09003 * 114.20518 * 157.70013 * 4 2 1 34 34 H 1.09001 * 114.38984 * 24.88767 * 4 2 1 35 35 H 1.09005 * 113.47059 * 219.15855 * 5 4 2 36 36 H 1.08995 * 113.47153 * 88.70915 * 5 4 2 37 37 H 0.96998 * 120.00162 * 354.79931 * 11 9 7 38 38 H 1.08000 * 120.00231 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.99649 * 180.24783 * 14 13 12 40 40 H 0.96997 * 120.00420 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99997 * 179.97438 * 25 15 14 42 42 H 1.07998 * 120.00813 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1223 1.4107 0.0000 4 6 2.1413 -0.9197 -1.0660 5 6 2.0390 -1.9761 0.0428 6 7 2.1156 -0.8811 1.0216 7 6 2.5332 -0.7459 2.2959 8 8 2.4622 0.3334 2.8464 9 6 3.0831 -1.9239 3.0303 10 8 3.1545 -3.0033 2.4794 11 7 3.5011 -1.7886 4.3044 12 6 3.9137 -2.9111 5.0273 13 6 3.3024 -4.1406 4.8110 14 6 3.7136 -5.2497 5.5211 15 6 4.7315 -5.1356 6.4597 16 8 5.1324 -6.2261 7.1620 17 6 6.0360 -6.0248 8.1419 18 1 6.3420 -5.0208 8.3963 19 6 6.5725 -7.1067 8.8231 20 7 6.2001 -8.3298 8.5129 21 14 7.8253 -6.8278 10.1805 22 1 7.2188 -5.9952 11.2502 23 1 8.2411 -8.1361 10.7467 24 1 9.0120 -6.1305 9.6231 25 6 5.3388 -3.9057 6.6804 26 6 4.9317 -2.7972 5.9669 27 1 -0.3635 0.6429 0.8017 28 1 -0.3634 0.3729 -0.9576 29 1 -0.3634 -1.0158 0.1558 30 1 3.1995 1.3524 0.1559 31 1 1.9191 1.8900 -0.9576 32 1 1.6702 1.9947 0.8017 33 1 3.1630 -0.6625 -1.3455 34 1 1.4945 -1.1073 -1.9231 35 1 2.8939 -2.6514 0.0792 36 1 1.0846 -2.5024 0.0542 37 1 3.5155 -0.9122 4.7197 38 1 2.5082 -4.2284 4.0844 39 1 3.2414 -6.2058 5.3501 40 1 6.5757 -9.0867 8.9892 41 1 6.1298 -3.8172 7.4104 42 1 5.4035 -1.8411 6.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320715593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:41 Heat of formation + Delta-G solvation = -43.785347 kcal Electronic energy + Delta-G solvation = -25756.740601 eV Core-core repulsion = 21896.663200 eV Total energy + Delta-G solvation = -3860.077401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31238 -41.31279 -40.38897 -39.05640 -38.21551 -35.56364 -34.17908 -32.78270 -31.95187 -30.62837 -29.85582 -28.42360 -27.45913 -25.92441 -24.04117 -23.96820 -23.13965 -21.87570 -20.24067 -19.80032 -18.99863 -18.62801 -18.04099 -17.34065 -17.16480 -16.61322 -16.38172 -16.26882 -15.97422 -15.58383 -15.47273 -15.15671 -14.90478 -14.57233 -14.52299 -14.19279 -13.69331 -13.63421 -13.40250 -13.31523 -13.29328 -13.07814 -12.90118 -12.76846 -12.65461 -12.55692 -12.39332 -12.19262 -12.13795 -11.47695 -11.31228 -11.11984 -10.67688 -10.55856 -9.93728 -9.91211 -8.70936 -8.46909 -6.14169 0.03353 0.47330 0.67799 1.08420 1.37148 1.47618 1.53327 2.04475 2.18300 2.29259 2.78241 3.11822 3.15555 3.35785 3.46046 3.85310 3.93044 3.94425 3.99183 4.05664 4.23113 4.42945 4.43642 4.50756 4.60987 4.70535 4.71903 4.83326 4.85938 4.92500 5.01518 5.07081 5.09097 5.11427 5.21020 5.21843 5.34671 5.39108 5.44606 5.61121 5.96365 6.00434 6.12726 6.35891 6.61328 6.87513 6.97243 7.75837 8.75788 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037949 B = 0.002290 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.664308 B =12224.784455 C =12632.369079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.146 3.854 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.094 3.906 6 N -0.618 5.618 7 C 0.537 3.463 8 O -0.544 6.544 9 C 0.501 3.499 10 O -0.524 6.524 11 N -0.623 5.623 12 C 0.052 3.948 13 C -0.066 4.066 14 C -0.184 4.184 15 C 0.114 3.886 16 O -0.226 6.226 17 C -0.414 4.414 18 H 0.106 0.894 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.219 4.219 26 C -0.074 4.074 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.427 0.573 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.135 0.865 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 19.122 -18.974 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.063 3.937 3 C -0.203 4.203 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.353 5.353 7 C 0.320 3.680 8 O -0.422 6.422 9 C 0.283 3.717 10 O -0.399 6.399 11 N -0.270 5.270 12 C -0.041 4.041 13 C -0.086 4.086 14 C -0.204 4.204 15 C 0.062 3.938 16 O -0.132 6.132 17 C -0.490 4.490 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.238 4.238 26 C -0.094 4.094 27 H 0.069 0.931 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.266 0.734 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.118 18.532 -18.840 27.955 hybrid contribution 0.578 -0.096 1.256 1.386 sum -8.540 18.436 -17.584 26.870 Atomic orbital electron populations 1.21996 0.91081 1.03085 1.04279 1.22531 0.95360 0.92635 0.83141 1.21914 1.00246 0.94594 1.03510 1.23552 1.03467 0.93304 0.96142 1.23329 1.03794 0.91734 0.83924 1.49995 1.58441 1.17445 1.09432 1.19348 0.79823 0.87721 0.81105 1.90738 1.56848 1.27967 1.66646 1.20427 0.79518 0.89293 0.82473 1.90757 1.53528 1.28404 1.67261 1.42850 1.62086 1.10632 1.11442 1.17354 1.00006 0.87437 0.99324 1.20683 0.98842 0.90894 0.98160 1.20231 1.00160 0.99761 1.00271 1.19899 0.94018 0.87975 0.91872 1.83963 1.55275 1.30277 1.43677 1.21823 1.20468 0.95691 1.11013 0.87646 1.26620 1.00201 0.93752 1.01481 1.70183 1.43808 0.99273 1.42442 0.84635 0.76954 0.78246 0.76321 1.18036 1.19857 1.18060 1.21126 1.04796 0.92210 1.05709 1.20825 0.94230 0.99114 0.95253 0.93059 0.87475 0.91461 0.93445 0.88175 0.93261 0.88211 0.85265 0.90390 0.87785 0.73448 0.84865 0.86258 0.91793 0.84760 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.27 71.98 0.67 -0.75 16 2 C 0.15 1.89 1.59 0.40 0.00 1.90 16 3 C -0.14 -1.95 8.73 71.98 0.63 -1.32 16 4 C -0.13 -1.04 7.61 30.92 0.24 -0.80 16 5 C 0.09 1.39 7.24 83.17 0.60 1.99 16 6 N -0.62 -12.51 3.37 -811.74 -2.74 -15.25 16 7 C 0.54 14.19 8.04 87.23 0.70 14.90 16 8 O -0.54 -15.98 16.69 -3.29 -0.05 -16.04 16 9 C 0.50 14.80 7.62 87.23 0.66 15.47 16 10 O -0.52 -17.53 12.92 -3.38 -0.04 -17.57 16 11 N -0.62 -17.93 5.32 -304.74 -1.62 -19.56 16 12 C 0.05 1.80 6.27 38.24 0.24 2.04 16 13 C -0.07 -2.54 8.64 22.39 0.19 -2.35 16 14 C -0.18 -8.23 9.98 22.37 0.22 -8.00 16 15 C 0.11 5.66 6.65 22.60 0.15 5.81 16 16 O -0.23 -13.49 9.75 -22.59 -0.22 -13.71 16 17 C -0.41 -23.70 9.44 67.92 0.64 -23.06 16 18 H 0.11 5.43 5.29 -2.91 -0.02 5.42 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -56.17 13.67 21.61 0.30 -55.87 16 21 Si 1.02 42.21 29.55 68.60 2.03 44.23 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.22 -9.30 9.12 22.37 0.20 -9.09 16 26 C -0.07 -2.56 9.96 22.39 0.22 -2.34 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.65 7.04 -2.39 -0.02 0.63 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.82 8.12 -2.39 -0.02 0.80 16 34 H 0.13 0.24 8.11 -2.39 -0.02 0.22 16 35 H 0.08 1.43 7.40 -2.38 -0.02 1.41 16 36 H 0.10 1.25 7.30 -2.39 -0.02 1.23 16 37 H 0.43 10.26 8.30 -92.71 -0.77 9.49 16 38 H 0.13 4.86 6.45 -2.91 -0.02 4.84 16 39 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.13 5.62 5.71 -2.91 -0.02 5.60 16 42 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -75.89 357.11 3.78 -72.11 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.30 Total: 28.07 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.84 Total: -6.43 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -4.06 Total: -90.67 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.32 Total: -47.32 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -75.89 3.78 -72.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320715593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.328 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds