Wall clock time and date at job start Tue Mar 31 2020 13:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47687 * 2 1 4 4 C 1.52992 * 109.47533 * 180.02562 * 3 2 1 5 5 C 1.53003 * 110.53494 * 66.37452 * 4 3 2 6 6 N 1.47320 * 110.59978 * 303.54658 * 4 3 2 7 7 C 1.34525 * 106.62004 * 241.47379 * 6 4 3 8 8 O 1.21534 * 123.77036 * 179.97438 * 7 6 4 9 9 N 1.33794 * 112.45746 * 359.97438 * 7 6 4 10 10 C 1.40254 * 124.17699 * 179.97438 * 9 7 6 11 11 C 1.38872 * 119.99832 * 6.12256 * 10 9 7 12 12 C 1.38009 * 120.00676 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99398 * 359.97438 * 12 11 10 14 14 O 1.35779 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00035 * 5.44545 * 14 13 12 16 16 H 1.07999 * 120.00089 * 354.95555 * 15 14 13 17 17 C 1.38637 * 119.99761 * 174.95483 * 15 14 13 18 18 N 1.31571 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99914 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46838 * 269.99903 * 19 17 15 21 21 H 1.48495 * 109.46789 * 29.99617 * 19 17 15 22 22 H 1.48497 * 109.46939 * 149.99718 * 19 17 15 23 23 C 1.38901 * 119.99709 * 0.25174 * 13 12 11 24 24 C 1.38011 * 119.99305 * 359.51258 * 23 13 12 25 25 C 1.34768 * 111.64367 * 0.23166 * 9 7 6 26 26 O 1.21247 * 127.15607 * 179.73457 * 25 9 7 27 27 H 1.09009 * 109.46936 * 300.00364 * 1 2 3 28 28 H 1.08996 * 109.46988 * 59.99567 * 1 2 3 29 29 H 1.08997 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46936 * 239.99636 * 2 1 3 31 31 H 1.08996 * 109.46988 * 120.00433 * 2 1 3 32 32 H 1.08995 * 109.47169 * 59.99603 * 3 2 1 33 33 H 1.09001 * 109.46820 * 300.00324 * 3 2 1 34 34 H 1.08996 * 109.47036 * 297.87150 * 5 4 3 35 35 H 1.09003 * 109.46939 * 57.87631 * 5 4 3 36 36 H 1.09004 * 109.47140 * 177.87388 * 5 4 3 37 37 H 0.96999 * 126.68715 * 61.50355 * 6 4 3 38 38 H 1.08005 * 119.99679 * 0.02562 * 11 10 9 39 39 H 1.08006 * 120.00015 * 179.97438 * 12 11 10 40 40 H 0.96995 * 119.99740 * 0.02562 * 18 17 15 41 41 H 1.07995 * 120.00954 * 179.72669 * 23 13 12 42 42 H 1.08002 * 120.00216 * 180.22958 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.1062 0.8683 -1.3137 6 7 4.0888 0.6801 1.1483 7 6 4.8008 1.5446 1.8937 8 8 5.3696 1.2395 2.9234 9 7 4.8126 2.7777 1.3747 10 6 5.4794 3.8687 1.9510 11 6 6.2882 3.6791 3.0639 12 6 6.9440 4.7526 3.6315 13 6 6.7954 6.0228 3.0892 14 8 7.4401 7.0791 3.6478 15 6 8.2957 6.8112 4.6546 16 1 8.3821 5.8047 5.0365 17 6 9.0648 7.8278 5.1997 18 7 8.9599 9.0539 4.7341 19 14 10.2509 7.4565 6.5942 20 1 9.5539 7.6240 7.8947 21 1 10.7386 6.0594 6.4704 22 1 11.4031 8.3909 6.5261 23 6 5.9827 6.2131 1.9790 24 6 5.3309 5.1386 1.4087 25 6 4.1001 2.8432 0.2326 26 8 3.9212 3.8193 -0.4639 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.7837 -0.1678 -1.4157 35 1 3.7215 1.4527 -2.1496 36 1 5.1954 0.9112 -1.3111 37 1 3.9454 -0.2616 1.3314 38 1 6.4041 2.6914 3.4852 39 1 7.5727 4.6051 4.4972 40 1 8.3443 9.2466 4.0098 41 1 5.8635 7.2013 1.5599 42 1 4.7019 5.2859 0.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320979617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:53 Heat of formation + Delta-G solvation = -45.116481 kcal Electronic energy + Delta-G solvation = -26549.568754 eV Core-core repulsion = 22689.433631 eV Total energy + Delta-G solvation = -3860.135123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90672 -39.16896 -38.80168 -37.68866 -36.46979 -35.36806 -33.68757 -32.21216 -31.03936 -30.29257 -28.54082 -27.39019 -25.30507 -24.54947 -23.60893 -22.24982 -21.80881 -20.54796 -20.34409 -18.66479 -17.91203 -17.03489 -16.89251 -16.67928 -15.96255 -15.88331 -15.60863 -14.87662 -14.71848 -14.31935 -14.14398 -13.96566 -13.75212 -13.73987 -13.35004 -13.27693 -12.93419 -12.74198 -12.65947 -12.33955 -12.17811 -12.06975 -11.71597 -11.64907 -11.28318 -11.10404 -10.94372 -10.69169 -10.31501 -10.23609 -10.13872 -9.90081 -9.74030 -9.30033 -8.73420 -8.33998 -7.15621 -6.80730 -4.08686 1.42540 1.98326 2.09190 2.14364 2.88559 3.11001 3.24095 3.31223 3.43708 3.65862 4.05063 4.09639 4.24901 4.49576 4.57329 4.60797 4.89835 4.98405 5.04327 5.13988 5.16159 5.17923 5.22452 5.31865 5.39063 5.45793 5.54080 5.65022 5.66955 5.71318 5.72665 5.81737 6.08084 6.16146 6.55081 6.59174 6.73569 6.80364 6.90458 7.23499 7.28897 7.34859 7.54778 7.60955 8.07956 8.36039 8.87394 9.54872 10.63140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.002798 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.569296 B =10005.982124 C =10494.498368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.123 3.877 5 C -0.147 4.147 6 N -0.721 5.721 7 C 0.701 3.299 8 O -0.531 6.531 9 N -0.499 5.499 10 C 0.016 3.984 11 C -0.078 4.078 12 C -0.216 4.216 13 C 0.155 3.845 14 O -0.196 6.196 15 C -0.471 4.471 16 H 0.086 0.914 17 C 0.011 3.989 18 N -0.878 5.878 19 Si 1.099 2.901 20 H -0.280 1.280 21 H -0.281 1.281 22 H -0.275 1.275 23 C -0.181 4.181 24 C -0.084 4.084 25 C 0.523 3.477 26 O -0.458 6.458 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.437 0.563 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.283 0.717 41 H 0.124 0.876 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -19.364 -11.290 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.153 4.153 4 C 0.032 3.968 5 C -0.205 4.205 6 N -0.387 5.387 7 C 0.403 3.597 8 O -0.404 6.404 9 N -0.236 5.236 10 C -0.073 4.073 11 C -0.097 4.097 12 C -0.236 4.236 13 C 0.100 3.900 14 O -0.100 6.100 15 C -0.547 4.547 16 H 0.104 0.896 17 C -0.195 4.195 18 N -0.510 5.510 19 Si 0.923 3.077 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.200 4.200 24 C -0.104 4.104 25 C 0.310 3.690 26 O -0.327 6.327 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.282 0.718 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.498 -17.922 -10.099 24.071 hybrid contribution -1.225 -1.249 -0.883 1.960 sum -13.723 -19.172 -10.982 26.009 Atomic orbital electron populations 1.21754 0.95093 1.01941 1.02223 1.21532 0.96583 0.95479 1.02450 1.21847 0.89997 0.98963 1.04455 1.21490 0.96808 0.89117 0.89391 1.22012 1.02232 1.02272 0.93944 1.45675 1.55169 1.12392 1.25419 1.15843 0.80019 0.80546 0.83330 1.90895 1.47839 1.78831 1.22862 1.43477 1.46433 1.09958 1.23749 1.17310 1.04568 0.84905 1.00504 1.21319 0.94083 1.00667 0.93638 1.21109 1.06298 0.91941 1.04265 1.19356 0.91809 0.87399 0.91399 1.83665 1.50506 1.29892 1.45918 1.22292 1.20583 0.99198 1.12637 0.89613 1.26581 0.98672 0.91935 1.02301 1.70549 1.35282 1.19572 1.25573 0.83054 0.75291 0.75779 0.73614 1.20622 1.20704 1.20007 1.20039 1.03188 0.98944 0.97870 1.20899 0.99615 0.89750 1.00110 1.20735 0.77925 0.90392 0.79974 1.90702 1.56733 1.36180 1.49127 0.92537 0.92413 0.92434 0.91166 0.91704 0.90689 0.89090 0.90106 0.89669 0.91286 0.71759 0.83385 0.84643 0.90684 0.85790 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.58 5.52 -26.73 -0.15 -0.73 16 3 C -0.11 -0.79 4.54 -26.74 -0.12 -0.91 16 4 C 0.12 1.08 1.01 -132.09 -0.13 0.94 16 5 C -0.15 -0.94 8.72 37.16 0.32 -0.62 16 6 N -0.72 -6.72 5.41 -52.94 -0.29 -7.00 16 7 C 0.70 10.23 8.54 -88.02 -0.75 9.48 16 8 O -0.53 -9.36 14.66 5.34 0.08 -9.28 16 9 N -0.50 -8.00 2.83 -64.31 -0.18 -8.18 16 10 C 0.02 0.32 6.56 -83.53 -0.55 -0.23 16 11 C -0.08 -1.62 9.25 -39.43 -0.36 -1.98 16 12 C -0.22 -4.98 9.16 -39.42 -0.36 -5.34 16 13 C 0.15 3.82 6.65 -39.09 -0.26 3.56 16 14 O -0.20 -5.56 9.16 0.01 0.00 -5.56 16 15 C -0.47 -13.34 9.48 30.88 0.29 -13.04 16 16 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 17 C 0.01 0.30 5.49 -17.52 -0.10 0.21 16 18 N -0.88 -26.24 13.70 55.48 0.76 -25.48 16 19 Si 1.10 23.87 29.92 -169.99 -5.09 18.79 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C -0.18 -3.93 9.99 -39.42 -0.39 -4.33 16 24 C -0.08 -1.66 9.31 -39.43 -0.37 -2.03 16 25 C 0.52 7.13 6.85 -10.56 -0.07 7.06 16 26 O -0.46 -7.09 15.05 5.59 0.08 -7.01 16 27 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.25 6.75 -51.92 -0.35 -0.10 16 31 H 0.06 0.30 7.04 -51.93 -0.37 -0.07 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.32 6.81 -51.93 -0.35 -0.03 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.44 2.81 8.12 -40.82 -0.33 2.48 16 38 H 0.15 3.01 5.18 -52.48 -0.27 2.74 16 39 H 0.14 3.12 5.63 -52.48 -0.30 2.83 16 40 H 0.28 8.63 7.97 -40.82 -0.33 8.31 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.14 2.61 5.35 -52.49 -0.28 2.33 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -33.30 346.13 -7.07 -40.37 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.02 Total: 6.45 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.63 Total: -8.31 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.29 Total: -40.66 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.16 Total: -21.84 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.30 -7.07 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320979617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.748 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds