Wall clock time and date at job start Tue Mar 31 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47687 * 2 1 4 4 C 1.52992 * 109.47533 * 180.02562 * 3 2 1 5 5 C 1.53003 * 110.53494 * 66.37452 * 4 3 2 6 6 N 1.47320 * 110.59978 * 303.54658 * 4 3 2 7 7 C 1.34525 * 106.62004 * 241.47379 * 6 4 3 8 8 O 1.21534 * 123.77036 * 179.97438 * 7 6 4 9 9 N 1.33794 * 112.45746 * 359.97438 * 7 6 4 10 10 C 1.40254 * 124.17699 * 179.97438 * 9 7 6 11 11 C 1.38872 * 119.99832 * 6.12256 * 10 9 7 12 12 C 1.38009 * 120.00676 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99398 * 359.97438 * 12 11 10 14 14 O 1.35779 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00035 * 5.44545 * 14 13 12 16 16 H 1.07999 * 120.00089 * 354.95555 * 15 14 13 17 17 C 1.38637 * 119.99761 * 174.95483 * 15 14 13 18 18 N 1.31571 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99914 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46838 * 269.99903 * 19 17 15 21 21 H 1.48495 * 109.46789 * 29.99617 * 19 17 15 22 22 H 1.48497 * 109.46939 * 149.99718 * 19 17 15 23 23 C 1.38901 * 119.99709 * 0.25174 * 13 12 11 24 24 C 1.38011 * 119.99305 * 359.51258 * 23 13 12 25 25 C 1.34768 * 111.64367 * 0.23166 * 9 7 6 26 26 O 1.21247 * 127.15607 * 179.73457 * 25 9 7 27 27 H 1.09009 * 109.46936 * 300.00364 * 1 2 3 28 28 H 1.08996 * 109.46988 * 59.99567 * 1 2 3 29 29 H 1.08997 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46936 * 239.99636 * 2 1 3 31 31 H 1.08996 * 109.46988 * 120.00433 * 2 1 3 32 32 H 1.08995 * 109.47169 * 59.99603 * 3 2 1 33 33 H 1.09001 * 109.46820 * 300.00324 * 3 2 1 34 34 H 1.08996 * 109.47036 * 297.87150 * 5 4 3 35 35 H 1.09003 * 109.46939 * 57.87631 * 5 4 3 36 36 H 1.09004 * 109.47140 * 177.87388 * 5 4 3 37 37 H 0.96999 * 126.68715 * 61.50355 * 6 4 3 38 38 H 1.08005 * 119.99679 * 0.02562 * 11 10 9 39 39 H 1.08006 * 120.00015 * 179.97438 * 12 11 10 40 40 H 0.96995 * 119.99740 * 0.02562 * 18 17 15 41 41 H 1.07995 * 120.00954 * 179.72669 * 23 13 12 42 42 H 1.08002 * 120.00216 * 180.22958 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.1062 0.8683 -1.3137 6 7 4.0888 0.6801 1.1483 7 6 4.8008 1.5446 1.8937 8 8 5.3696 1.2395 2.9234 9 7 4.8126 2.7777 1.3747 10 6 5.4794 3.8687 1.9510 11 6 6.2882 3.6791 3.0639 12 6 6.9440 4.7526 3.6315 13 6 6.7954 6.0228 3.0892 14 8 7.4401 7.0791 3.6478 15 6 8.2957 6.8112 4.6546 16 1 8.3821 5.8047 5.0365 17 6 9.0648 7.8278 5.1997 18 7 8.9599 9.0539 4.7341 19 14 10.2509 7.4565 6.5942 20 1 9.5539 7.6240 7.8947 21 1 10.7386 6.0594 6.4704 22 1 11.4031 8.3909 6.5261 23 6 5.9827 6.2131 1.9790 24 6 5.3309 5.1386 1.4087 25 6 4.1001 2.8432 0.2326 26 8 3.9212 3.8193 -0.4639 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.7837 -0.1678 -1.4157 35 1 3.7215 1.4527 -2.1496 36 1 5.1954 0.9112 -1.3111 37 1 3.9454 -0.2616 1.3314 38 1 6.4041 2.6914 3.4852 39 1 7.5727 4.6051 4.4972 40 1 8.3443 9.2466 4.0098 41 1 5.8635 7.2013 1.5599 42 1 4.7019 5.2859 0.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320979617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:52 Heat of formation + Delta-G solvation = -67.037648 kcal Electronic energy + Delta-G solvation = -26550.519327 eV Core-core repulsion = 22689.433631 eV Total energy + Delta-G solvation = -3861.085696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.04718 -40.96740 -40.00066 -39.02299 -37.86601 -36.54177 -34.69835 -34.11656 -32.12987 -31.67640 -30.16986 -27.89449 -27.15464 -25.78406 -24.96444 -23.69538 -22.90763 -21.69287 -21.43212 -20.46918 -19.27298 -18.65993 -18.09947 -18.03237 -17.25069 -16.83325 -16.72102 -16.30405 -15.84294 -15.75120 -15.50414 -15.42110 -15.38267 -15.07167 -14.62674 -14.43603 -13.96992 -13.91514 -13.59410 -13.42914 -13.28207 -13.06735 -12.80095 -12.63073 -12.44936 -12.32508 -12.09664 -11.92918 -11.72776 -11.70198 -11.54857 -11.37415 -10.87722 -10.74754 -10.61327 -10.09467 -8.99687 -8.94271 -6.28020 0.15183 0.29934 0.46775 0.96839 1.48673 1.60158 1.77680 1.84506 1.97789 2.32477 2.68324 2.71441 3.04307 3.21798 3.35872 3.60892 3.79437 3.93396 3.99045 4.08667 4.16385 4.17848 4.31269 4.48145 4.50604 4.69354 4.71418 4.74517 4.86004 4.88941 4.97623 5.02644 5.07746 5.10583 5.19054 5.27157 5.33822 5.34690 5.47275 5.53694 5.74289 5.80031 5.96283 6.17580 6.24521 6.80765 6.95640 7.52681 8.46475 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.002798 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.569296 B =10005.982124 C =10494.498368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.111 4.111 4 C 0.137 3.863 5 C -0.145 4.145 6 N -0.690 5.690 7 C 0.696 3.304 8 O -0.565 6.565 9 N -0.514 5.514 10 C 0.043 3.957 11 C -0.082 4.082 12 C -0.218 4.218 13 C 0.122 3.878 14 O -0.240 6.240 15 C -0.490 4.490 16 H 0.093 0.907 17 C -0.040 4.040 18 N -0.913 5.913 19 Si 1.147 2.853 20 H -0.263 1.263 21 H -0.260 1.260 22 H -0.271 1.271 23 C -0.177 4.177 24 C -0.081 4.081 25 C 0.515 3.485 26 O -0.476 6.476 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.455 0.545 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 -23.035 -12.860 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.150 4.150 4 C 0.047 3.953 5 C -0.203 4.203 6 N -0.356 5.356 7 C 0.398 3.602 8 O -0.441 6.441 9 N -0.252 5.252 10 C -0.048 4.048 11 C -0.102 4.102 12 C -0.238 4.238 13 C 0.071 3.929 14 O -0.147 6.147 15 C -0.566 4.566 16 H 0.110 0.890 17 C -0.237 4.237 18 N -0.547 5.547 19 Si 0.962 3.038 20 H -0.188 1.188 21 H -0.184 1.184 22 H -0.196 1.196 23 C -0.197 4.197 24 C -0.100 4.100 25 C 0.304 3.696 26 O -0.347 6.347 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.304 0.696 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.151 0.849 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.200 -21.691 -11.740 28.460 hybrid contribution -1.018 -0.377 -0.672 1.277 sum -15.218 -22.068 -12.412 29.541 Atomic orbital electron populations 1.21765 0.95129 1.02412 1.01889 1.21548 0.96490 0.93790 1.03760 1.21908 0.87927 1.00772 1.04358 1.21660 0.97986 0.85511 0.90146 1.22115 1.01634 1.04353 0.92166 1.45560 1.53106 1.12581 1.24386 1.15987 0.80362 0.80575 0.83313 1.90869 1.49541 1.79190 1.24492 1.43697 1.46936 1.09728 1.24840 1.17462 1.02290 0.86136 0.98935 1.21416 0.94235 1.00329 0.94187 1.21171 1.06382 0.92067 1.04164 1.19796 0.92792 0.87614 0.92739 1.83655 1.52345 1.31403 1.47277 1.22651 1.21056 0.99753 1.13090 0.88990 1.28393 0.99887 0.91230 1.04203 1.70682 1.36574 1.20897 1.26539 0.82555 0.73365 0.76736 0.71132 1.18820 1.18437 1.19623 1.20292 1.02272 1.00208 0.96940 1.21086 0.99307 0.89299 1.00347 1.21700 0.76877 0.92328 0.78664 1.90684 1.57091 1.37542 1.49335 0.93610 0.92115 0.91582 0.88946 0.91276 0.92176 0.88024 0.86563 0.88656 0.92246 0.69591 0.82505 0.85257 0.92908 0.84897 0.82188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.12 -0.59 5.52 30.59 0.17 -0.42 16 3 C -0.11 -1.12 4.54 30.59 0.14 -0.98 16 4 C 0.14 1.90 1.01 2.98 0.00 1.90 16 5 C -0.15 -1.19 8.72 71.98 0.63 -0.56 16 6 N -0.69 -10.46 5.41 -439.82 -2.38 -12.84 16 7 C 0.70 18.84 8.54 179.44 1.53 20.37 16 8 O -0.56 -19.11 14.66 -3.82 -0.06 -19.17 16 9 N -0.51 -15.56 2.83 -594.61 -1.68 -17.25 16 10 C 0.04 1.62 6.56 38.10 0.25 1.87 16 11 C -0.08 -3.42 9.25 22.37 0.21 -3.22 16 12 C -0.22 -10.32 9.16 22.37 0.20 -10.11 16 13 C 0.12 6.24 6.65 22.59 0.15 6.39 16 14 O -0.24 -14.39 9.16 -22.89 -0.21 -14.59 16 15 C -0.49 -29.00 9.48 67.92 0.64 -28.35 16 16 H 0.09 5.11 5.20 -2.91 -0.02 5.10 16 17 C -0.04 -2.33 5.49 84.83 0.47 -1.86 16 18 N -0.91 -57.25 13.70 21.61 0.30 -56.95 16 19 Si 1.15 48.74 29.92 68.60 2.05 50.79 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.18 -7.88 9.99 22.37 0.22 -7.65 16 24 C -0.08 -3.14 9.31 22.37 0.21 -2.94 16 25 C 0.52 12.78 6.85 87.94 0.60 13.39 16 26 O -0.48 -13.70 15.05 -2.93 -0.04 -13.74 16 27 H 0.04 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.11 6.75 -2.38 -0.02 0.09 16 31 H 0.07 0.31 7.04 -2.39 -0.02 0.30 16 32 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.21 6.81 -2.39 -0.02 0.19 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.46 3.92 8.12 -92.71 -0.75 3.17 16 38 H 0.16 6.33 5.18 -2.91 -0.02 6.32 16 39 H 0.13 6.19 5.63 -2.91 -0.02 6.17 16 40 H 0.26 17.10 7.97 -92.71 -0.74 16.36 16 41 H 0.13 5.57 8.06 -2.91 -0.02 5.54 16 42 H 0.16 5.68 5.35 -2.91 -0.02 5.67 16 Total: -1.00 -77.29 346.13 4.47 -72.82 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.36 Total: 23.34 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.14 Total: -12.40 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.77 Total: -87.03 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.31 Total: -47.51 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.79 kcal Total: -77.29 4.47 -72.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320979617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds