Wall clock time and date at job start Tue Mar 31 2020 13:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46801 * 2 1 4 4 C 1.53006 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.52994 * 110.65186 * 302.91078 * 4 3 2 6 6 N 1.47314 * 110.59812 * 65.81992 * 4 3 2 7 7 C 1.34536 * 106.61399 * 118.30723 * 6 4 3 8 8 O 1.21534 * 123.76474 * 180.20887 * 7 6 4 9 9 N 1.33792 * 112.45890 * 0.38236 * 7 6 4 10 10 C 1.40258 * 124.17683 * 179.86142 * 9 7 6 11 11 C 1.38875 * 119.99476 * 185.80869 * 10 9 7 12 12 C 1.38005 * 120.00231 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99503 * 0.02562 * 12 11 10 14 14 O 1.35775 * 120.00115 * 179.97438 * 13 12 11 15 15 C 1.34813 * 116.99875 * 5.45875 * 14 13 12 16 16 H 1.07994 * 120.00573 * 354.94429 * 15 14 13 17 17 C 1.38640 * 119.99568 * 174.94866 * 15 14 13 18 18 N 1.31566 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47158 * 270.00398 * 19 17 15 21 21 H 1.48501 * 109.47111 * 30.00076 * 19 17 15 22 22 H 1.48499 * 109.46953 * 150.00242 * 19 17 15 23 23 C 1.38900 * 119.99507 * 0.27012 * 13 12 11 24 24 C 1.38013 * 119.99186 * 359.42701 * 23 13 12 25 25 C 1.34772 * 111.64190 * 359.59568 * 9 7 6 26 26 O 1.21239 * 127.15065 * 180.26613 * 25 9 7 27 27 H 1.09001 * 109.47222 * 60.00611 * 1 2 3 28 28 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47417 * 300.00429 * 1 2 3 30 30 H 1.08993 * 109.47417 * 239.99571 * 2 1 3 31 31 H 1.08999 * 109.46538 * 119.99098 * 2 1 3 32 32 H 1.08999 * 109.47919 * 59.99697 * 3 2 1 33 33 H 1.09008 * 109.47280 * 299.99319 * 3 2 1 34 34 H 1.09001 * 109.47517 * 297.78443 * 5 4 3 35 35 H 1.09001 * 109.47678 * 57.78485 * 5 4 3 36 36 H 1.09004 * 109.47317 * 177.78586 * 5 4 3 37 37 H 0.97000 * 126.69271 * 298.56774 * 6 4 3 38 38 H 1.08002 * 119.99947 * 0.03023 * 11 10 9 39 39 H 1.08000 * 120.00487 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00068 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.00412 * 179.72161 * 23 13 12 42 42 H 1.08006 * 119.99678 * 180.31656 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.1091 0.6650 1.2029 6 7 4.0888 0.8776 -1.2570 7 6 4.7966 1.8536 -1.8541 8 8 5.3617 1.7217 -2.9219 9 7 4.8120 2.9844 -1.1391 10 6 5.4784 4.1549 -1.5303 11 6 5.5391 5.2408 -0.6667 12 6 6.1952 6.3924 -1.0512 13 6 6.7944 6.4655 -2.3023 14 8 7.4395 7.5986 -2.6810 15 6 7.5599 8.5724 -1.7564 16 1 7.0823 8.4652 -0.7938 17 6 8.2970 9.7115 -2.0414 18 7 8.8785 9.8425 -3.2143 19 14 8.4633 11.0611 -0.7606 20 1 7.3565 12.0376 -0.9238 21 1 8.4008 10.4647 0.5979 22 1 9.7648 11.7539 -0.9377 23 6 6.7283 5.3815 -3.1683 24 6 6.0775 4.2278 -2.7810 25 6 4.1032 2.8615 0.0006 26 8 3.9280 3.7098 0.8489 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 3.7886 1.1518 2.1240 35 1 3.7248 -0.3547 1.1782 36 1 5.1982 0.6437 1.1632 37 1 3.9448 -0.0214 -1.5915 38 1 5.0736 5.1838 0.3062 39 1 6.2421 7.2371 -0.3799 40 1 9.3945 10.6393 -3.4136 41 1 7.1902 5.4398 -4.1427 42 1 6.0304 3.3830 -3.4523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320979618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:57 Heat of formation + Delta-G solvation = -38.663696 kcal Electronic energy + Delta-G solvation = -26511.027983 eV Core-core repulsion = 22651.172674 eV Total energy + Delta-G solvation = -3859.855309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.85929 -39.06648 -38.76367 -37.60916 -36.37588 -35.33515 -33.64322 -32.23773 -30.94146 -30.23692 -28.50454 -27.37275 -25.53067 -24.81866 -23.37408 -22.35026 -21.71926 -20.51820 -20.26907 -18.09405 -18.01056 -17.18279 -16.93671 -16.28095 -16.06087 -15.89518 -15.51382 -14.72447 -14.61037 -14.34732 -14.29124 -13.97127 -13.72226 -13.62901 -13.26519 -12.96898 -12.86297 -12.75803 -12.58542 -12.24827 -12.04608 -11.93958 -11.73317 -11.68120 -11.54728 -11.11491 -11.07491 -10.99141 -10.50441 -10.25410 -10.10255 -9.86348 -9.70570 -9.23702 -8.79303 -8.26414 -7.07056 -6.47907 -4.05602 1.47262 2.05587 2.16790 2.18978 2.92734 3.08925 3.13461 3.18117 3.21265 3.70107 3.95273 4.09010 4.27956 4.54628 4.58349 4.64583 4.92692 5.01780 5.07075 5.16089 5.22269 5.24750 5.28811 5.35138 5.41728 5.51034 5.57660 5.67209 5.70767 5.75375 5.80616 5.84161 6.15043 6.24478 6.56105 6.68493 6.80463 6.88482 7.01943 7.18189 7.33873 7.39028 7.42927 7.73190 7.96683 8.12487 8.97282 9.65683 10.69588 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002856 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.396521 B = 9800.984100 C =10447.637675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.115 4.115 4 C 0.123 3.877 5 C -0.149 4.149 6 N -0.721 5.721 7 C 0.702 3.298 8 O -0.532 6.532 9 N -0.499 5.499 10 C 0.014 3.986 11 C -0.080 4.080 12 C -0.220 4.220 13 C 0.152 3.848 14 O -0.171 6.171 15 C -0.392 4.392 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.267 1.267 22 H -0.277 1.277 23 C -0.178 4.178 24 C -0.082 4.082 25 C 0.522 3.478 26 O -0.457 6.457 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.437 0.563 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.271 0.729 41 H 0.125 0.875 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.741 -19.978 8.517 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.153 4.153 4 C 0.032 3.968 5 C -0.207 4.207 6 N -0.387 5.387 7 C 0.403 3.597 8 O -0.405 6.405 9 N -0.236 5.236 10 C -0.075 4.075 11 C -0.100 4.100 12 C -0.240 4.240 13 C 0.097 3.903 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.191 1.191 22 H -0.202 1.202 23 C -0.198 4.198 24 C -0.101 4.101 25 C 0.309 3.691 26 O -0.327 6.327 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.282 0.718 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.143 0.857 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.223 -19.236 8.057 24.694 hybrid contribution 0.022 0.322 0.496 0.592 sum -13.201 -18.914 8.554 24.600 Atomic orbital electron populations 1.21759 0.95155 1.01907 1.02234 1.21563 0.96518 0.95488 1.02478 1.21853 0.90008 0.98966 1.04508 1.21483 0.96761 0.91342 0.87216 1.22048 1.02177 1.00708 0.95738 1.45659 1.55420 1.15104 1.22510 1.15838 0.79943 0.80329 0.83590 1.90885 1.48085 1.81251 1.20306 1.43476 1.46440 1.12501 1.21144 1.17306 1.07345 0.85461 0.97420 1.21010 0.98431 0.91461 0.99106 1.21030 1.05388 0.99204 0.98410 1.19518 0.91075 0.87430 0.92229 1.83984 1.64190 1.20507 1.38714 1.21365 1.33344 0.96058 0.96083 0.88890 1.25315 0.95476 0.98057 0.97632 1.70045 1.30452 1.28169 1.20713 0.85696 0.78197 0.79838 0.79632 1.19809 1.19092 1.20212 1.20135 1.06982 0.91837 1.00866 1.21199 0.95990 0.98572 0.94342 1.20729 0.77846 0.89515 0.81018 1.90707 1.56719 1.46133 1.39138 0.92549 0.92461 0.92412 0.91781 0.91022 0.89117 0.90554 0.89687 0.90001 0.91243 0.71829 0.84502 0.84739 0.91912 0.85660 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.58 5.43 -26.73 -0.15 -0.73 16 3 C -0.11 -0.81 4.58 -26.73 -0.12 -0.93 16 4 C 0.12 1.10 1.01 -132.09 -0.13 0.96 16 5 C -0.15 -0.98 8.62 37.15 0.32 -0.66 16 6 N -0.72 -6.74 5.62 -52.94 -0.30 -7.03 16 7 C 0.70 10.19 8.54 -88.01 -0.75 9.44 16 8 O -0.53 -9.24 14.65 5.34 0.08 -9.16 16 9 N -0.50 -8.03 2.83 -64.31 -0.18 -8.21 16 10 C 0.01 0.27 6.56 -83.53 -0.55 -0.27 16 11 C -0.08 -1.63 9.31 -39.43 -0.37 -2.00 16 12 C -0.22 -4.97 9.16 -39.42 -0.36 -5.33 16 13 C 0.15 3.76 6.65 -39.09 -0.26 3.50 16 14 O -0.17 -4.91 9.76 0.02 0.00 -4.91 16 15 C -0.39 -10.98 9.48 30.88 0.29 -10.69 16 16 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 19 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.18 -3.96 9.99 -39.42 -0.39 -4.35 16 24 C -0.08 -1.66 9.25 -39.43 -0.36 -2.02 16 25 C 0.52 7.24 6.85 -10.56 -0.07 7.17 16 26 O -0.46 -7.27 15.06 5.59 0.08 -7.18 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 7.40 -51.93 -0.38 -0.11 16 31 H 0.07 0.27 6.42 -51.93 -0.33 -0.07 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.34 6.38 -51.93 -0.33 0.00 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.44 2.80 8.40 -40.82 -0.34 2.46 16 38 H 0.14 2.64 5.36 -52.49 -0.28 2.36 16 39 H 0.14 2.99 5.63 -52.49 -0.30 2.69 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 42 H 0.15 2.96 5.17 -52.48 -0.27 2.69 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -33.07 346.61 -7.02 -40.10 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.03 Total: 5.38 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.63 Total: -5.29 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.28 Total: -39.67 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.16 Total: -21.25 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.07 -7.02 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320979618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.433 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds