Wall clock time and date at job start Tue Mar 31 2020 13:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46801 * 2 1 4 4 C 1.53006 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.52994 * 110.65186 * 302.91078 * 4 3 2 6 6 N 1.47314 * 110.59812 * 65.81992 * 4 3 2 7 7 C 1.34536 * 106.61399 * 118.30723 * 6 4 3 8 8 O 1.21534 * 123.76474 * 180.20887 * 7 6 4 9 9 N 1.33792 * 112.45890 * 0.38236 * 7 6 4 10 10 C 1.40258 * 124.17683 * 179.86142 * 9 7 6 11 11 C 1.38875 * 119.99476 * 185.80869 * 10 9 7 12 12 C 1.38005 * 120.00231 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99503 * 0.02562 * 12 11 10 14 14 O 1.35775 * 120.00115 * 179.97438 * 13 12 11 15 15 C 1.34813 * 116.99875 * 5.45875 * 14 13 12 16 16 H 1.07994 * 120.00573 * 354.94429 * 15 14 13 17 17 C 1.38640 * 119.99568 * 174.94866 * 15 14 13 18 18 N 1.31566 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47158 * 270.00398 * 19 17 15 21 21 H 1.48501 * 109.47111 * 30.00076 * 19 17 15 22 22 H 1.48499 * 109.46953 * 150.00242 * 19 17 15 23 23 C 1.38900 * 119.99507 * 0.27012 * 13 12 11 24 24 C 1.38013 * 119.99186 * 359.42701 * 23 13 12 25 25 C 1.34772 * 111.64190 * 359.59568 * 9 7 6 26 26 O 1.21239 * 127.15065 * 180.26613 * 25 9 7 27 27 H 1.09001 * 109.47222 * 60.00611 * 1 2 3 28 28 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47417 * 300.00429 * 1 2 3 30 30 H 1.08993 * 109.47417 * 239.99571 * 2 1 3 31 31 H 1.08999 * 109.46538 * 119.99098 * 2 1 3 32 32 H 1.08999 * 109.47919 * 59.99697 * 3 2 1 33 33 H 1.09008 * 109.47280 * 299.99319 * 3 2 1 34 34 H 1.09001 * 109.47517 * 297.78443 * 5 4 3 35 35 H 1.09001 * 109.47678 * 57.78485 * 5 4 3 36 36 H 1.09004 * 109.47317 * 177.78586 * 5 4 3 37 37 H 0.97000 * 126.69271 * 298.56774 * 6 4 3 38 38 H 1.08002 * 119.99947 * 0.03023 * 11 10 9 39 39 H 1.08000 * 120.00487 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00068 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.00412 * 179.72161 * 23 13 12 42 42 H 1.08006 * 119.99678 * 180.31656 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.1091 0.6650 1.2029 6 7 4.0888 0.8776 -1.2570 7 6 4.7966 1.8536 -1.8541 8 8 5.3617 1.7217 -2.9219 9 7 4.8120 2.9844 -1.1391 10 6 5.4784 4.1549 -1.5303 11 6 5.5391 5.2408 -0.6667 12 6 6.1952 6.3924 -1.0512 13 6 6.7944 6.4655 -2.3023 14 8 7.4395 7.5986 -2.6810 15 6 7.5599 8.5724 -1.7564 16 1 7.0823 8.4652 -0.7938 17 6 8.2970 9.7115 -2.0414 18 7 8.8785 9.8425 -3.2143 19 14 8.4633 11.0611 -0.7606 20 1 7.3565 12.0376 -0.9238 21 1 8.4008 10.4647 0.5979 22 1 9.7648 11.7539 -0.9377 23 6 6.7283 5.3815 -3.1683 24 6 6.0775 4.2278 -2.7810 25 6 4.1032 2.8615 0.0006 26 8 3.9280 3.7098 0.8489 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 3.7886 1.1518 2.1240 35 1 3.7248 -0.3547 1.1782 36 1 5.1982 0.6437 1.1632 37 1 3.9448 -0.0214 -1.5915 38 1 5.0736 5.1838 0.3062 39 1 6.2421 7.2371 -0.3799 40 1 9.3945 10.6393 -3.4136 41 1 7.1902 5.4398 -4.1427 42 1 6.0304 3.3830 -3.4523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320979618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:57 Heat of formation + Delta-G solvation = -60.551351 kcal Electronic energy + Delta-G solvation = -26511.977103 eV Core-core repulsion = 22651.172674 eV Total energy + Delta-G solvation = -3860.804429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.00296 -40.84073 -39.96732 -38.91191 -37.79466 -36.49463 -34.65493 -34.13700 -32.04024 -31.60550 -30.12960 -27.89561 -27.48444 -25.89946 -24.73458 -23.72237 -22.89048 -21.57297 -21.43259 -19.93502 -19.22887 -18.94860 -18.05572 -17.74752 -17.20455 -16.84022 -16.40993 -16.22602 -16.11679 -15.64096 -15.50096 -15.40528 -15.28040 -14.76053 -14.68476 -14.36731 -13.89511 -13.77680 -13.59052 -13.49077 -13.35948 -13.15913 -12.82410 -12.76439 -12.69470 -12.33648 -12.14526 -12.07323 -11.69397 -11.57330 -11.51815 -11.36958 -10.82640 -10.75042 -10.59210 -10.01274 -8.86199 -8.50095 -6.17986 0.21946 0.38612 0.51787 1.01682 1.35692 1.43817 1.53362 1.88648 2.01167 2.16323 2.71708 2.75106 3.08331 3.38507 3.41929 3.62773 3.86211 3.99318 4.04879 4.13683 4.19238 4.20963 4.37472 4.51105 4.57501 4.71024 4.74329 4.75654 4.90874 4.96195 4.99619 5.03970 5.11444 5.12698 5.28815 5.30530 5.33787 5.36922 5.49222 5.54803 5.77063 5.92802 5.96687 6.02050 6.28029 6.93574 6.99780 7.69581 8.72346 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002856 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.396521 B = 9800.984100 C =10447.637675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.137 3.863 5 C -0.147 4.147 6 N -0.690 5.690 7 C 0.697 3.303 8 O -0.563 6.563 9 N -0.514 5.514 10 C 0.038 3.962 11 C -0.082 4.082 12 C -0.219 4.219 13 C 0.120 3.880 14 O -0.220 6.220 15 C -0.417 4.417 16 H 0.104 0.896 17 C -0.020 4.020 18 N -0.916 5.916 19 Si 1.020 2.980 20 H -0.262 1.262 21 H -0.253 1.253 22 H -0.270 1.270 23 C -0.180 4.180 24 C -0.081 4.081 25 C 0.514 3.486 26 O -0.478 6.478 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.455 0.545 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.274 0.726 41 H 0.128 0.872 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 -22.788 10.934 29.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.150 4.150 4 C 0.047 3.953 5 C -0.205 4.205 6 N -0.357 5.357 7 C 0.398 3.602 8 O -0.440 6.440 9 N -0.251 5.251 10 C -0.053 4.053 11 C -0.101 4.101 12 C -0.239 4.239 13 C 0.068 3.932 14 O -0.126 6.126 15 C -0.493 4.493 16 H 0.122 0.878 17 C -0.218 4.218 18 N -0.554 5.554 19 Si 0.838 3.162 20 H -0.187 1.187 21 H -0.176 1.176 22 H -0.195 1.195 23 C -0.200 4.200 24 C -0.100 4.100 25 C 0.303 3.697 26 O -0.349 6.349 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.304 0.696 38 H 0.170 0.830 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.252 -22.157 10.511 28.880 hybrid contribution 0.422 0.848 -0.205 0.969 sum -14.830 -21.309 10.306 27.933 Atomic orbital electron populations 1.21771 0.95221 1.02417 1.01845 1.21580 0.96394 0.93661 1.03908 1.21905 0.87979 1.00893 1.04250 1.21638 0.97911 0.87933 0.87793 1.22146 1.01757 1.02224 0.94338 1.45531 1.53382 1.14779 1.21973 1.15967 0.80297 0.80651 0.83247 1.90859 1.49695 1.81696 1.21712 1.43690 1.46931 1.12008 1.22502 1.17444 1.04920 0.86481 0.96445 1.21129 0.98184 0.90953 0.99856 1.21111 1.05123 1.00032 0.97646 1.19914 0.92046 0.87469 0.93732 1.83961 1.66723 1.21973 1.39932 1.21868 1.34120 0.96622 0.96687 0.87834 1.26616 0.94671 1.00464 1.00026 1.70185 1.32407 1.29474 1.23297 0.84578 0.78525 0.76173 0.76888 1.18704 1.17606 1.19486 1.20330 1.06933 0.91911 1.00827 1.21341 0.95618 0.98051 0.95003 1.21704 0.76854 0.91453 0.79694 1.90687 1.57193 1.47464 1.39525 0.93448 0.91514 0.92406 0.90865 0.89040 0.88651 0.91767 0.88962 0.86431 0.92034 0.69619 0.83036 0.84823 0.91649 0.85405 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.91 71.98 0.71 -0.25 16 2 C -0.12 -0.60 5.43 30.60 0.17 -0.43 16 3 C -0.11 -1.19 4.58 30.60 0.14 -1.05 16 4 C 0.14 1.97 1.01 2.98 0.00 1.98 16 5 C -0.15 -1.29 8.62 71.98 0.62 -0.67 16 6 N -0.69 -10.55 5.62 -439.81 -2.47 -13.02 16 7 C 0.70 18.82 8.54 179.44 1.53 20.35 16 8 O -0.56 -18.78 14.65 -3.82 -0.06 -18.83 16 9 N -0.51 -15.73 2.83 -594.61 -1.68 -17.41 16 10 C 0.04 1.46 6.56 38.10 0.25 1.71 16 11 C -0.08 -3.30 9.31 22.37 0.21 -3.09 16 12 C -0.22 -10.14 9.16 22.38 0.20 -9.94 16 13 C 0.12 6.20 6.65 22.59 0.15 6.35 16 14 O -0.22 -13.37 9.76 -22.85 -0.22 -13.60 16 15 C -0.42 -24.39 9.48 67.92 0.64 -23.75 16 16 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 18 N -0.92 -56.24 13.67 21.61 0.30 -55.95 16 19 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 C -0.18 -8.28 9.99 22.38 0.22 -8.06 16 24 C -0.08 -3.29 9.25 22.37 0.21 -3.08 16 25 C 0.51 13.13 6.85 87.94 0.60 13.73 16 26 O -0.48 -14.32 15.06 -2.90 -0.04 -14.37 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.27 7.40 -2.39 -0.02 0.25 16 31 H 0.09 0.15 6.42 -2.39 -0.02 0.14 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.26 6.38 -2.39 -0.02 0.24 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.46 3.92 8.40 -92.71 -0.78 3.14 16 38 H 0.15 5.70 5.36 -2.91 -0.02 5.69 16 39 H 0.13 6.11 5.63 -2.91 -0.02 6.09 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 41 H 0.13 5.68 8.06 -2.91 -0.02 5.66 16 42 H 0.16 6.32 5.17 -2.91 -0.02 6.30 16 Total: -1.00 -76.63 346.61 4.28 -72.35 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.30 Total: 22.76 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 6.13 Total: -6.85 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.86 Total: -86.38 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.32 Total: -46.80 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -76.63 4.28 -72.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320979618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.795 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds