Wall clock time and date at job start Tue Mar 31 2020 13:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.28441 * 2 1 4 4 C 1.53496 * 114.20579 * 133.06394 * 2 1 3 5 5 N 1.47069 * 87.98489 * 139.65383 * 4 2 1 6 6 C 1.34781 * 136.05411 * 152.83990 * 5 4 2 7 7 O 1.21369 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.49316 * 119.99649 * 180.02562 * 6 5 4 9 9 O 1.21393 * 120.00450 * 0.02562 * 8 6 5 10 10 N 1.34781 * 119.99649 * 180.02562 * 8 6 5 11 11 C 1.39747 * 119.99604 * 174.78853 * 10 8 6 12 12 C 1.38992 * 120.00454 * 146.28417 * 11 10 8 13 13 C 1.37975 * 119.98832 * 180.02562 * 12 11 10 14 14 C 1.38929 * 120.00755 * 359.97438 * 13 12 11 15 15 O 1.35767 * 119.98927 * 179.97438 * 14 13 12 16 16 C 1.34795 * 117.00107 * 354.09090 * 15 14 13 17 17 H 1.08002 * 120.00037 * 354.58293 * 16 15 14 18 18 C 1.38653 * 120.00041 * 174.58485 * 16 15 14 19 19 N 1.31559 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00060 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47178 * 119.99809 * 20 18 16 23 23 H 1.48499 * 109.47174 * 239.99907 * 20 18 16 24 24 C 1.38934 * 120.01650 * 0.25652 * 14 13 12 25 25 C 1.37970 * 120.00520 * 359.49270 * 24 14 13 26 26 C 1.47062 * 87.88648 * 333.10387 * 5 4 2 27 27 H 1.08996 * 109.47378 * 286.93445 * 1 2 3 28 28 H 1.09006 * 109.46694 * 46.93400 * 1 2 3 29 29 H 1.08996 * 109.47195 * 166.92930 * 1 2 3 30 30 H 1.08994 * 109.47405 * 193.06406 * 3 2 1 31 31 H 1.09002 * 109.47060 * 313.06795 * 3 2 1 32 32 H 1.09005 * 109.46825 * 73.06063 * 3 2 1 33 33 H 1.09004 * 113.46737 * 24.87845 * 4 2 1 34 34 H 1.09004 * 113.52239 * 254.44651 * 4 2 1 35 35 H 0.96997 * 120.00532 * 354.79216 * 10 8 6 36 36 H 1.07999 * 120.00435 * 359.97438 * 12 11 10 37 37 H 1.08000 * 119.99264 * 179.97438 * 13 12 11 38 38 H 0.96994 * 120.00300 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.99868 * 179.72114 * 24 14 13 40 40 H 1.08004 * 120.00043 * 180.25659 * 25 24 14 41 41 H 1.08999 * 113.47001 * 141.67923 * 26 5 4 42 42 H 1.09000 * 113.46786 * 272.11581 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1594 -0.9559 1.0228 5 7 3.1599 -1.3053 0.0031 6 6 4.4335 -1.7463 0.0042 7 8 5.0069 -1.9422 1.0558 8 6 5.1389 -1.9937 -1.2883 9 8 4.5656 -1.7972 -2.3401 10 7 6.4124 -2.4351 -1.2872 11 6 7.0366 -2.7705 -2.4917 12 6 8.3991 -2.5488 -2.6537 13 6 9.0150 -2.8795 -3.8433 14 6 8.2735 -3.4347 -4.8787 15 8 8.8798 -3.7596 -6.0492 16 6 10.1734 -3.4066 -6.1869 17 1 10.6555 -2.8134 -5.4239 18 6 10.8852 -3.8050 -7.3082 19 7 10.2980 -4.5280 -8.2374 20 14 12.6780 -3.3165 -7.4987 21 1 13.0990 -2.5106 -6.3246 22 1 13.5173 -4.5384 -7.5875 23 1 12.8430 -2.5117 -8.7357 24 6 6.9106 -3.6520 -4.7187 25 6 6.2952 -3.3263 -3.5276 26 6 2.1613 -0.9554 -1.0183 27 1 -0.3634 0.2993 0.9831 28 1 -0.3633 0.7018 -0.7508 29 1 -0.3633 -1.0010 -0.2324 30 1 3.1979 1.3435 -0.2323 31 1 1.6338 2.0166 -0.7508 32 1 2.0034 1.8575 0.9831 33 1 1.5100 -1.7876 1.2966 34 1 2.5822 -0.4484 1.8899 35 1 6.8956 -2.5201 -0.4505 36 1 8.9755 -2.1168 -1.8490 37 1 10.0736 -2.7069 -3.9694 38 1 10.7958 -4.8064 -9.0219 39 1 6.3336 -4.0794 -5.5254 40 1 5.2365 -3.4991 -3.4019 41 1 2.5856 -0.4465 -1.8838 42 1 1.5125 -1.7868 -1.2937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321416911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:32 Heat of formation + Delta-G solvation = -23.340900 kcal Electronic energy + Delta-G solvation = -25585.914404 eV Core-core repulsion = 21726.723541 eV Total energy + Delta-G solvation = -3859.190863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -41.30734 -40.08620 -38.83615 -38.03000 -36.58227 -34.11828 -32.81195 -32.23029 -30.29543 -28.57830 -27.91844 -27.53292 -26.48335 -25.47973 -23.79651 -22.30649 -21.08493 -19.89741 -19.05091 -18.22747 -17.96102 -17.35320 -16.87765 -16.43160 -16.15175 -15.44929 -15.20283 -14.62267 -14.54444 -14.43909 -14.18135 -13.78841 -13.65764 -13.56749 -13.31309 -12.90870 -12.72735 -12.58669 -12.44301 -12.17584 -11.99598 -11.90076 -11.66918 -11.60787 -11.58072 -11.29782 -11.07108 -10.77311 -10.65857 -10.45989 -9.76086 -9.53234 -9.32820 -9.13522 -8.76214 -8.27865 -7.00773 -6.49251 -4.06734 1.26311 2.01825 2.13163 2.30169 3.09488 3.11939 3.17586 3.22138 3.33992 3.71931 3.93603 4.28022 4.38552 4.46814 4.52164 4.69931 4.96985 5.06478 5.11725 5.13983 5.24327 5.24996 5.32699 5.44250 5.48875 5.50852 5.53657 5.57636 5.69368 5.72266 5.91486 6.03595 6.13027 6.16728 6.70980 6.74593 6.82944 7.04737 7.15149 7.20048 7.28422 7.41067 7.66092 7.72125 7.95159 8.09988 8.96107 9.65463 10.68528 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002270 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.875460 B =12332.020119 C =12642.658677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.126 4.126 4 C 0.113 3.887 5 N -0.620 5.620 6 C 0.539 3.461 7 O -0.525 6.525 8 C 0.500 3.500 9 O -0.504 6.504 10 N -0.626 5.626 11 C 0.027 3.973 12 C -0.082 4.082 13 C -0.219 4.219 14 C 0.150 3.850 15 O -0.173 6.173 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.177 4.177 25 C -0.064 4.064 26 C 0.112 3.888 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.413 0.587 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.270 0.730 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 8.540 16.795 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.183 4.183 4 C -0.010 4.010 5 N -0.356 5.356 6 C 0.323 3.677 7 O -0.401 6.401 8 C 0.281 3.719 9 O -0.379 6.379 10 N -0.272 5.272 11 C -0.065 4.065 12 C -0.102 4.102 13 C -0.238 4.238 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.197 4.197 25 C -0.084 4.084 26 C -0.010 4.010 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.250 0.750 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.300 8.254 16.182 24.406 hybrid contribution 1.235 0.079 0.395 1.299 sum -15.065 8.333 16.577 23.899 Atomic orbital electron populations 1.21643 0.92176 1.02628 1.02617 1.22251 0.96260 0.95443 0.96827 1.21530 1.00998 0.93399 1.02370 1.23258 0.87434 0.96891 0.93378 1.49173 1.09770 1.63872 1.12755 1.19735 0.80847 0.77455 0.89638 1.90764 1.65429 1.50775 1.33115 1.19884 0.83289 0.79562 0.89127 1.90764 1.65732 1.49274 1.32169 1.42886 1.12310 1.62234 1.09724 1.17220 0.92362 1.09422 0.87501 1.20502 0.92493 0.99770 0.97456 1.20990 1.01008 1.08307 0.93537 1.19448 0.92006 0.92633 0.86399 1.83994 1.26220 1.68416 1.28985 1.21382 0.84529 1.33437 1.07403 0.88942 1.25315 1.00190 0.96152 0.94909 1.70045 1.36931 1.33565 1.08863 0.85632 0.80389 0.78504 0.78821 1.19058 1.20111 1.20106 1.20097 0.92317 1.08872 0.98438 1.20570 0.99154 0.96564 0.92090 1.23276 0.87460 0.96769 0.93509 0.91787 0.91605 0.91915 0.92195 0.91564 0.91876 0.89172 0.90001 0.75036 0.86849 0.84885 0.91971 0.85938 0.85839 0.88790 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 9.30 37.16 0.35 -0.21 16 2 C -0.11 -0.68 1.53 -154.13 -0.24 -0.91 16 3 C -0.13 -0.82 9.22 37.16 0.34 -0.47 16 4 C 0.11 0.86 7.78 -8.51 -0.07 0.79 16 5 N -0.62 -6.85 3.50 -185.89 -0.65 -7.50 16 6 C 0.54 7.52 8.13 -11.65 -0.09 7.42 16 7 O -0.52 -8.19 17.26 5.48 0.09 -8.10 16 8 C 0.50 7.73 7.62 -11.65 -0.09 7.64 16 9 O -0.50 -8.67 12.91 5.46 0.07 -8.60 16 10 N -0.63 -9.62 5.32 -10.27 -0.05 -9.67 16 11 C 0.03 0.49 6.27 -83.69 -0.52 -0.03 16 12 C -0.08 -1.49 9.96 -39.40 -0.39 -1.89 16 13 C -0.22 -4.66 9.12 -39.42 -0.36 -5.02 16 14 C 0.15 3.59 6.65 -39.07 -0.26 3.33 16 15 O -0.17 -4.89 9.75 0.10 0.00 -4.89 16 16 C -0.39 -10.77 9.44 30.89 0.29 -10.48 16 17 H 0.09 2.34 5.29 -52.49 -0.28 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 20 Si 0.94 20.26 29.55 -169.99 -5.02 15.23 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.18 -3.83 9.98 -39.42 -0.39 -4.22 16 25 C -0.06 -1.24 8.64 -39.40 -0.34 -1.58 16 26 C 0.11 0.98 6.70 -8.64 -0.06 0.92 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.26 8.13 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 30 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 31 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.41 5.47 8.30 -40.82 -0.34 5.13 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 40 H 0.12 2.29 6.44 -52.48 -0.34 1.95 16 41 H 0.09 0.96 7.37 -51.93 -0.38 0.57 16 42 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -32.76 359.20 -6.71 -39.47 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.38 Total: 6.57 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.93 Total: -3.74 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.05 Total: -41.37 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.17 Total: -21.58 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.76 -6.71 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321416911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.129 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds