Wall clock time and date at job start Tue Mar 31 2020 13:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.28441 * 2 1 4 4 C 1.53496 * 114.20579 * 133.06394 * 2 1 3 5 5 N 1.47069 * 87.98489 * 139.65383 * 4 2 1 6 6 C 1.34781 * 136.05411 * 152.83990 * 5 4 2 7 7 O 1.21369 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.49316 * 119.99649 * 180.02562 * 6 5 4 9 9 O 1.21393 * 120.00450 * 0.02562 * 8 6 5 10 10 N 1.34781 * 119.99649 * 180.02562 * 8 6 5 11 11 C 1.39747 * 119.99604 * 174.78853 * 10 8 6 12 12 C 1.38992 * 120.00454 * 146.28417 * 11 10 8 13 13 C 1.37975 * 119.98832 * 180.02562 * 12 11 10 14 14 C 1.38929 * 120.00755 * 359.97438 * 13 12 11 15 15 O 1.35767 * 119.98927 * 179.97438 * 14 13 12 16 16 C 1.34795 * 117.00107 * 354.09090 * 15 14 13 17 17 H 1.08002 * 120.00037 * 354.58293 * 16 15 14 18 18 C 1.38653 * 120.00041 * 174.58485 * 16 15 14 19 19 N 1.31559 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00060 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47178 * 119.99809 * 20 18 16 23 23 H 1.48499 * 109.47174 * 239.99907 * 20 18 16 24 24 C 1.38934 * 120.01650 * 0.25652 * 14 13 12 25 25 C 1.37970 * 120.00520 * 359.49270 * 24 14 13 26 26 C 1.47062 * 87.88648 * 333.10387 * 5 4 2 27 27 H 1.08996 * 109.47378 * 286.93445 * 1 2 3 28 28 H 1.09006 * 109.46694 * 46.93400 * 1 2 3 29 29 H 1.08996 * 109.47195 * 166.92930 * 1 2 3 30 30 H 1.08994 * 109.47405 * 193.06406 * 3 2 1 31 31 H 1.09002 * 109.47060 * 313.06795 * 3 2 1 32 32 H 1.09005 * 109.46825 * 73.06063 * 3 2 1 33 33 H 1.09004 * 113.46737 * 24.87845 * 4 2 1 34 34 H 1.09004 * 113.52239 * 254.44651 * 4 2 1 35 35 H 0.96997 * 120.00532 * 354.79216 * 10 8 6 36 36 H 1.07999 * 120.00435 * 359.97438 * 12 11 10 37 37 H 1.08000 * 119.99264 * 179.97438 * 13 12 11 38 38 H 0.96994 * 120.00300 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.99868 * 179.72114 * 24 14 13 40 40 H 1.08004 * 120.00043 * 180.25659 * 25 24 14 41 41 H 1.08999 * 113.47001 * 141.67923 * 26 5 4 42 42 H 1.09000 * 113.46786 * 272.11581 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1594 -0.9559 1.0228 5 7 3.1599 -1.3053 0.0031 6 6 4.4335 -1.7463 0.0042 7 8 5.0069 -1.9422 1.0558 8 6 5.1389 -1.9937 -1.2883 9 8 4.5656 -1.7972 -2.3401 10 7 6.4124 -2.4351 -1.2872 11 6 7.0366 -2.7705 -2.4917 12 6 8.3991 -2.5488 -2.6537 13 6 9.0150 -2.8795 -3.8433 14 6 8.2735 -3.4347 -4.8787 15 8 8.8798 -3.7596 -6.0492 16 6 10.1734 -3.4066 -6.1869 17 1 10.6555 -2.8134 -5.4239 18 6 10.8852 -3.8050 -7.3082 19 7 10.2980 -4.5280 -8.2374 20 14 12.6780 -3.3165 -7.4987 21 1 13.0990 -2.5106 -6.3246 22 1 13.5173 -4.5384 -7.5875 23 1 12.8430 -2.5117 -8.7357 24 6 6.9106 -3.6520 -4.7187 25 6 6.2952 -3.3263 -3.5276 26 6 2.1613 -0.9554 -1.0183 27 1 -0.3634 0.2993 0.9831 28 1 -0.3633 0.7018 -0.7508 29 1 -0.3633 -1.0010 -0.2324 30 1 3.1979 1.3435 -0.2323 31 1 1.6338 2.0166 -0.7508 32 1 2.0034 1.8575 0.9831 33 1 1.5100 -1.7876 1.2966 34 1 2.5822 -0.4484 1.8899 35 1 6.8956 -2.5201 -0.4505 36 1 8.9755 -2.1168 -1.8490 37 1 10.0736 -2.7069 -3.9694 38 1 10.7958 -4.8064 -9.0219 39 1 6.3336 -4.0794 -5.5254 40 1 5.2365 -3.4991 -3.4019 41 1 2.5856 -0.4465 -1.8838 42 1 1.5125 -1.7868 -1.2937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321416911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:29 Heat of formation + Delta-G solvation = -45.455248 kcal Electronic energy + Delta-G solvation = -25586.873354 eV Core-core repulsion = 21726.723541 eV Total energy + Delta-G solvation = -3860.149813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30260 -41.30005 -40.40564 -39.19981 -38.21980 -35.59457 -34.18687 -33.53379 -31.95180 -30.02794 -28.66462 -28.24249 -27.38529 -27.16749 -25.06557 -23.94368 -22.60710 -21.12228 -19.92839 -19.69454 -19.17713 -18.95662 -18.21859 -17.58768 -17.31473 -16.61795 -16.36917 -16.23039 -15.95113 -15.53758 -15.42092 -15.17049 -14.94134 -14.65939 -14.56501 -14.22309 -14.17644 -13.65274 -13.40161 -13.29294 -13.21576 -12.99533 -12.87924 -12.72858 -12.69613 -12.51043 -12.21745 -12.08460 -12.01421 -11.39101 -11.26749 -11.19025 -10.71268 -10.57767 -9.98734 -9.91241 -8.71117 -8.47445 -6.14424 0.00648 0.47465 0.66563 1.06279 1.37279 1.44993 1.55494 2.01127 2.17709 2.27538 2.78186 3.06727 3.13098 3.21787 3.45965 3.76944 3.90792 3.99271 4.05752 4.21862 4.27528 4.43753 4.49760 4.50811 4.54314 4.61486 4.73723 4.82704 4.84765 5.01237 5.02728 5.08317 5.09115 5.12322 5.20980 5.31010 5.34596 5.44188 5.48155 5.61127 5.94901 6.00548 6.11540 6.27576 6.56616 6.84102 6.97059 7.75810 8.75722 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002270 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.875460 B =12332.020119 C =12642.658677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.127 4.127 4 C 0.109 3.891 5 N -0.621 5.621 6 C 0.538 3.462 7 O -0.547 6.547 8 C 0.502 3.498 9 O -0.522 6.522 10 N -0.622 5.622 11 C 0.052 3.948 12 C -0.074 4.074 13 C -0.219 4.219 14 C 0.114 3.886 15 O -0.226 6.226 16 C -0.412 4.412 17 H 0.106 0.894 18 C -0.023 4.023 19 N -0.919 5.919 20 Si 1.020 2.980 21 H -0.249 1.249 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.184 4.184 25 C -0.066 4.066 26 C 0.104 3.896 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.427 0.573 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.507 10.078 19.755 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.184 4.184 4 C -0.012 4.012 5 N -0.355 5.355 6 C 0.322 3.678 7 O -0.425 6.425 8 C 0.284 3.716 9 O -0.398 6.398 10 N -0.269 5.269 11 C -0.041 4.041 12 C -0.094 4.094 13 C -0.238 4.238 14 C 0.062 3.938 15 O -0.132 6.132 16 C -0.488 4.488 17 H 0.123 0.877 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.839 3.161 21 H -0.172 1.172 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.204 4.204 25 C -0.086 4.086 26 C -0.018 4.018 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.464 9.825 19.214 27.761 hybrid contribution 1.229 -0.295 -0.254 1.289 sum -16.235 9.530 18.960 26.719 Atomic orbital electron populations 1.21641 0.89865 1.03405 1.03677 1.22184 0.97734 0.94446 0.94620 1.21558 0.99497 0.93917 1.03460 1.23591 0.86531 0.97979 0.93085 1.49415 1.09309 1.61702 1.15114 1.19306 0.81906 0.78224 0.88369 1.90754 1.66223 1.52407 1.33159 1.20309 0.82957 0.78523 0.89767 1.90763 1.66111 1.49788 1.33148 1.42838 1.12564 1.62275 1.09246 1.17348 0.92462 1.06456 0.87851 1.20824 0.92696 0.98568 0.97295 1.21123 1.01097 1.07700 0.93920 1.19904 0.93006 0.94232 0.86614 1.83962 1.26911 1.70982 1.31354 1.21893 0.84744 1.34000 1.08169 0.87664 1.26616 1.05278 0.95970 0.94238 1.70190 1.39245 1.36236 1.10028 0.84508 0.73793 0.78458 0.79330 1.17190 1.19426 1.19546 1.20235 0.91779 1.08995 0.99393 1.20694 0.99744 0.96431 0.91702 1.23545 0.87085 0.97983 0.93217 0.90406 0.91086 0.91133 0.94667 0.90615 0.90559 0.86941 0.89830 0.73394 0.82677 0.84798 0.91798 0.86243 0.84794 0.90547 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.30 71.98 0.67 0.06 16 2 C -0.09 -0.88 1.53 -51.93 -0.08 -0.96 16 3 C -0.13 -1.39 9.22 71.98 0.66 -0.72 16 4 C 0.11 1.35 7.78 83.18 0.65 2.00 16 5 N -0.62 -12.51 3.50 -860.40 -3.02 -15.52 16 6 C 0.54 14.13 8.13 87.23 0.71 14.84 16 7 O -0.55 -16.12 17.26 -3.31 -0.06 -16.18 16 8 C 0.50 14.70 7.62 87.23 0.66 15.36 16 9 O -0.52 -17.32 12.91 -3.38 -0.04 -17.36 16 10 N -0.62 -17.71 5.32 -304.74 -1.62 -19.33 16 11 C 0.05 1.78 6.27 38.24 0.24 2.02 16 12 C -0.07 -2.53 9.96 22.39 0.22 -2.31 16 13 C -0.22 -9.26 9.12 22.37 0.20 -9.06 16 14 C 0.11 5.64 6.65 22.60 0.15 5.79 16 15 O -0.23 -13.46 9.75 -22.57 -0.22 -13.68 16 16 C -0.41 -23.56 9.44 67.92 0.64 -22.91 16 17 H 0.11 5.45 5.29 -2.91 -0.02 5.43 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 19 N -0.92 -56.03 13.67 21.61 0.30 -55.74 16 20 Si 1.02 42.24 29.55 68.60 2.03 44.26 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 24 C -0.18 -8.17 9.98 22.37 0.22 -7.95 16 25 C -0.07 -2.52 8.64 22.39 0.19 -2.32 16 26 C 0.10 1.60 6.70 83.09 0.56 2.16 16 27 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.07 0.31 8.13 -2.38 -0.02 0.29 16 29 H 0.07 0.26 7.90 -2.39 -0.02 0.24 16 30 H 0.03 0.56 7.93 -2.39 -0.02 0.54 16 31 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.43 10.12 8.30 -92.71 -0.77 9.35 16 36 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.13 5.60 5.71 -2.91 -0.02 5.58 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 40 H 0.13 4.84 6.44 -2.91 -0.02 4.83 16 41 H 0.08 1.48 7.37 -2.39 -0.02 1.46 16 42 H 0.11 1.33 7.94 -2.39 -0.02 1.32 16 Total: -1.00 -74.94 359.20 3.83 -71.10 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.29 Total: 27.29 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.17 Total: -4.85 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -4.34 Total: -90.59 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.32 Total: -47.23 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.94 3.83 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321416911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.649 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds