Wall clock time and date at job start Tue Mar 31 2020 12:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38288 * 120.11971 * 2 1 4 4 C 1.37927 * 120.35256 * 180.17635 * 3 2 1 5 5 C 1.39291 * 120.24370 * 0.06567 * 4 3 2 6 6 C 1.38882 * 118.86959 * 359.60352 * 5 4 3 7 7 C 1.37739 * 120.78961 * 0.52144 * 6 5 4 8 8 C 1.51646 * 107.03089 * 180.57868 * 6 5 4 9 9 H 1.08999 * 110.97257 * 133.86518 * 8 6 5 10 10 N 1.46498 * 110.93926 * 257.53999 * 8 6 5 11 11 C 1.34783 * 119.99907 * 198.97013 * 10 8 6 12 12 O 1.21343 * 119.99770 * 0.02562 * 11 10 8 13 13 C 1.49444 * 119.99829 * 180.02562 * 11 10 8 14 14 O 1.21353 * 120.00395 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99750 * 179.72509 * 13 11 10 16 16 C 1.46504 * 119.99858 * 180.27542 * 15 13 11 17 17 C 1.53004 * 109.46932 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47179 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47447 * 60.00038 * 22 20 18 24 24 H 1.48504 * 109.46883 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47066 * 299.99741 * 22 20 18 26 26 C 1.54708 * 101.90733 * 15.69451 * 8 6 5 27 27 O 1.36130 * 129.87877 * 179.56490 * 5 4 3 28 28 H 1.09002 * 109.47705 * 89.99167 * 1 2 3 29 29 H 1.08998 * 109.47429 * 209.99823 * 1 2 3 30 30 H 1.09003 * 109.47016 * 329.99848 * 1 2 3 31 31 H 1.08002 * 119.82338 * 0.20209 * 3 2 1 32 32 H 1.08001 * 119.88390 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.00986 * 179.68128 * 7 6 5 34 34 H 0.97000 * 120.00381 * 18.97287 * 10 8 6 35 35 H 0.97000 * 120.00317 * 0.28447 * 15 13 11 36 36 H 1.08992 * 109.47142 * 300.00148 * 16 15 13 37 37 H 1.08997 * 109.46860 * 60.00391 * 16 15 13 38 38 H 1.08998 * 109.47524 * 300.00356 * 17 16 15 39 39 H 1.09005 * 109.46510 * 60.00408 * 17 16 15 40 40 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 41 41 H 1.08997 * 110.74886 * 92.96746 * 26 8 6 42 42 H 1.09001 * 110.74683 * 216.31780 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5801 1.2018 -0.0037 5 6 4.2866 0.0013 -0.0088 6 6 3.5785 -1.1934 -0.0017 7 6 2.2011 -1.1968 -0.0006 8 6 4.5995 -2.3147 0.0051 9 1 4.3406 -3.0736 0.7434 10 7 4.7337 -2.9086 -1.3274 11 6 5.2785 -4.1334 -1.4676 12 8 5.6573 -4.7444 -0.4900 13 6 5.4160 -4.7389 -2.8269 14 8 5.0376 -4.1277 -3.8046 15 7 5.9659 -5.9614 -2.9676 16 6 6.1062 -6.5525 -4.3007 17 6 6.7542 -7.9333 -4.1807 18 6 6.8991 -8.5411 -5.5520 19 1 6.5623 -7.9971 -6.4221 20 6 7.4607 -9.7920 -5.6959 21 7 7.8704 -10.4546 -4.6363 22 14 7.6410 -10.5450 -7.3958 23 1 8.4956 -9.6693 -8.2371 24 1 8.2687 -11.8858 -7.2792 25 1 6.3013 -10.6791 -8.0224 26 6 5.8920 -1.5672 0.4102 27 8 5.6295 -0.2211 -0.0209 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6599 2.1310 0.0033 32 1 4.1144 2.1404 -0.0032 33 1 1.6632 -2.1332 -0.0002 34 1 4.4306 -2.4203 -2.1088 35 1 6.2686 -6.4499 -2.1861 36 1 5.1225 -6.6518 -4.7594 37 1 6.7323 -5.9094 -4.9191 38 1 7.7379 -7.8344 -3.7217 39 1 6.1276 -8.5761 -3.5623 40 1 8.2652 -11.3349 -4.7374 41 1 6.0379 -1.6054 1.4897 42 1 6.7557 -1.9785 -0.1122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323962222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:40 Heat of formation + Delta-G solvation = -83.163527 kcal Electronic energy + Delta-G solvation = -25255.631706 eV Core-core repulsion = 21393.846739 eV Total energy + Delta-G solvation = -3861.784967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78290 -40.28220 -38.41249 -38.06681 -35.56339 -34.76248 -32.88547 -32.33477 -31.74719 -29.86832 -29.23028 -27.05008 -25.79581 -24.23463 -23.31052 -22.02756 -21.38448 -21.04907 -20.27049 -18.53621 -17.80765 -17.16580 -16.80284 -16.60341 -16.13676 -15.67835 -15.44376 -15.14458 -14.83407 -14.50826 -14.35785 -14.28331 -14.03910 -13.97230 -13.52295 -13.17648 -13.02547 -12.61364 -12.51456 -12.34499 -12.33176 -12.06570 -11.64042 -11.32812 -11.26263 -11.11392 -11.06196 -10.70017 -10.41332 -9.86254 -9.61563 -9.53968 -9.37569 -9.20342 -8.73377 -8.43980 -8.43298 -6.11521 -4.15326 0.75571 0.95935 1.50122 2.42067 2.86047 3.29041 3.29743 3.32417 3.33995 3.36908 3.78545 3.88624 4.13639 4.38523 4.41502 4.52023 4.67651 4.74722 4.83393 4.90750 4.96001 5.19284 5.21968 5.25281 5.25917 5.29324 5.56388 5.61679 5.84985 5.93003 5.96574 6.14805 6.15052 6.21164 6.21889 6.55464 6.65972 6.76290 6.94993 7.42574 7.55545 7.58107 7.83472 7.85412 8.17651 8.29938 8.89951 9.49562 10.99876 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.002107 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.967118 B =13286.916900 C =13704.977972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.073 4.073 4 C -0.139 4.139 5 C 0.117 3.883 6 C -0.192 4.192 7 C -0.048 4.048 8 C 0.160 3.840 9 H 0.119 0.881 10 N -0.695 5.695 11 C 0.511 3.489 12 O -0.517 6.517 13 C 0.497 3.503 14 O -0.530 6.530 15 N -0.685 5.685 16 C 0.118 3.882 17 C 0.011 3.989 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.041 3.959 27 O -0.299 6.299 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.416 0.584 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.094 0.906 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 23.069 13.679 29.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.157 4.157 5 C 0.071 3.929 6 C -0.194 4.194 7 C -0.066 4.066 8 C 0.056 3.944 9 H 0.136 0.864 10 N -0.349 5.349 11 C 0.292 3.708 12 O -0.392 6.392 13 C 0.277 3.723 14 O -0.408 6.408 15 N -0.336 5.336 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.035 4.035 27 O -0.213 6.213 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.491 22.977 13.662 29.097 hybrid contribution 0.202 -0.692 -0.830 1.100 sum -11.288 22.285 12.832 28.084 Atomic orbital electron populations 1.20719 0.90508 1.02852 1.02516 1.19809 0.96405 0.92527 1.03328 1.20832 0.92717 0.98042 0.97519 1.20264 0.93477 0.95653 1.06347 1.19617 0.83363 0.94392 0.95498 1.20633 0.94609 0.93724 1.10415 1.20256 0.91518 0.98314 0.96562 1.20995 0.92548 0.94591 0.86304 0.86364 1.45818 1.61964 1.17603 1.09507 1.20583 0.78111 0.81670 0.90397 1.90762 1.47146 1.61201 1.40096 1.19878 0.80544 0.83376 0.88533 1.90748 1.48996 1.61429 1.39641 1.46236 1.58190 1.16349 1.12780 1.21955 1.01210 0.96918 0.80229 1.19352 0.96193 0.88609 0.98453 1.20968 1.41056 1.01946 0.92328 0.92213 1.25005 0.95177 0.97022 0.97085 1.69950 1.40834 1.13406 1.28860 0.86544 0.78482 0.78263 0.84078 1.20089 1.21227 1.20100 1.24336 0.98714 0.79103 1.01322 1.86879 1.19660 1.32506 1.82232 0.91084 0.91474 0.91477 0.84958 0.85136 0.85460 0.74666 0.75360 0.91819 0.91800 0.95649 0.95660 0.92703 0.88828 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.02 36.00 0.36 -0.20 16 2 C -0.12 -0.89 5.89 -104.56 -0.62 -1.50 16 3 C -0.07 -0.51 9.68 -39.68 -0.38 -0.90 16 4 C -0.14 -1.15 10.06 -39.30 -0.40 -1.55 16 5 C 0.12 1.18 7.04 -38.95 -0.27 0.91 16 6 C -0.19 -1.84 5.80 -104.10 -0.60 -2.45 16 7 C -0.05 -0.41 9.70 -39.72 -0.39 -0.79 16 8 C 0.16 1.61 3.40 -67.72 -0.23 1.38 16 9 H 0.12 1.15 7.72 -51.93 -0.40 0.75 16 10 N -0.69 -8.20 5.18 -54.03 -0.28 -8.48 16 11 C 0.51 7.37 7.89 -11.58 -0.09 7.27 16 12 O -0.52 -8.14 16.22 5.50 0.09 -8.05 16 13 C 0.50 8.43 7.89 -11.59 -0.09 8.34 16 14 O -0.53 -10.03 16.48 5.49 0.09 -9.94 16 15 N -0.68 -12.24 5.55 -60.73 -0.34 -12.58 16 16 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 17 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 18 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.04 0.39 7.73 38.06 0.29 0.68 16 27 O -0.30 -3.26 11.10 -20.15 -0.22 -3.49 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.42 4.87 8.08 -40.82 -0.33 4.54 16 35 H 0.41 6.95 7.94 -40.82 -0.32 6.62 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.54 366.10 -8.08 -39.62 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.66 Total: 5.80 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.99 Total: 0.65 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.12 Total: -46.30 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.54 -8.08 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323962222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.547 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds