Wall clock time and date at job start Tue Mar 31 2020 12:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38288 * 120.11971 * 2 1 4 4 C 1.37927 * 120.35256 * 180.17635 * 3 2 1 5 5 C 1.39291 * 120.24370 * 0.06567 * 4 3 2 6 6 C 1.38882 * 118.86959 * 359.60352 * 5 4 3 7 7 C 1.37739 * 120.78961 * 0.52144 * 6 5 4 8 8 C 1.51646 * 107.03089 * 180.57868 * 6 5 4 9 9 H 1.08999 * 110.97257 * 133.86518 * 8 6 5 10 10 N 1.46498 * 110.93926 * 257.53999 * 8 6 5 11 11 C 1.34783 * 119.99907 * 198.97013 * 10 8 6 12 12 O 1.21343 * 119.99770 * 0.02562 * 11 10 8 13 13 C 1.49444 * 119.99829 * 180.02562 * 11 10 8 14 14 O 1.21353 * 120.00395 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99750 * 179.72509 * 13 11 10 16 16 C 1.46504 * 119.99858 * 180.27542 * 15 13 11 17 17 C 1.53004 * 109.46932 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47179 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47447 * 60.00038 * 22 20 18 24 24 H 1.48504 * 109.46883 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47066 * 299.99741 * 22 20 18 26 26 C 1.54708 * 101.90733 * 15.69451 * 8 6 5 27 27 O 1.36130 * 129.87877 * 179.56490 * 5 4 3 28 28 H 1.09002 * 109.47705 * 89.99167 * 1 2 3 29 29 H 1.08998 * 109.47429 * 209.99823 * 1 2 3 30 30 H 1.09003 * 109.47016 * 329.99848 * 1 2 3 31 31 H 1.08002 * 119.82338 * 0.20209 * 3 2 1 32 32 H 1.08001 * 119.88390 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.00986 * 179.68128 * 7 6 5 34 34 H 0.97000 * 120.00381 * 18.97287 * 10 8 6 35 35 H 0.97000 * 120.00317 * 0.28447 * 15 13 11 36 36 H 1.08992 * 109.47142 * 300.00148 * 16 15 13 37 37 H 1.08997 * 109.46860 * 60.00391 * 16 15 13 38 38 H 1.08998 * 109.47524 * 300.00356 * 17 16 15 39 39 H 1.09005 * 109.46510 * 60.00408 * 17 16 15 40 40 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 41 41 H 1.08997 * 110.74886 * 92.96746 * 26 8 6 42 42 H 1.09001 * 110.74683 * 216.31780 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5801 1.2018 -0.0037 5 6 4.2866 0.0013 -0.0088 6 6 3.5785 -1.1934 -0.0017 7 6 2.2011 -1.1968 -0.0006 8 6 4.5995 -2.3147 0.0051 9 1 4.3406 -3.0736 0.7434 10 7 4.7337 -2.9086 -1.3274 11 6 5.2785 -4.1334 -1.4676 12 8 5.6573 -4.7444 -0.4900 13 6 5.4160 -4.7389 -2.8269 14 8 5.0376 -4.1277 -3.8046 15 7 5.9659 -5.9614 -2.9676 16 6 6.1062 -6.5525 -4.3007 17 6 6.7542 -7.9333 -4.1807 18 6 6.8991 -8.5411 -5.5520 19 1 6.5623 -7.9971 -6.4221 20 6 7.4607 -9.7920 -5.6959 21 7 7.8704 -10.4546 -4.6363 22 14 7.6410 -10.5450 -7.3958 23 1 8.4956 -9.6693 -8.2371 24 1 8.2687 -11.8858 -7.2792 25 1 6.3013 -10.6791 -8.0224 26 6 5.8920 -1.5672 0.4102 27 8 5.6295 -0.2211 -0.0209 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6599 2.1310 0.0033 32 1 4.1144 2.1404 -0.0032 33 1 1.6632 -2.1332 -0.0002 34 1 4.4306 -2.4203 -2.1088 35 1 6.2686 -6.4499 -2.1861 36 1 5.1225 -6.6518 -4.7594 37 1 6.7323 -5.9094 -4.9191 38 1 7.7379 -7.8344 -3.7217 39 1 6.1276 -8.5761 -3.5623 40 1 8.2652 -11.3349 -4.7374 41 1 6.0379 -1.6054 1.4897 42 1 6.7557 -1.9785 -0.1122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323962222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:40 Heat of formation + Delta-G solvation = -104.836118 kcal Electronic energy + Delta-G solvation = -25256.571500 eV Core-core repulsion = 21393.846739 eV Total energy + Delta-G solvation = -3862.724761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57178 -41.50493 -39.64574 -38.77975 -36.98225 -36.03007 -34.82563 -32.88970 -32.53439 -31.71364 -30.01134 -27.68601 -27.36359 -25.59056 -24.20618 -23.03953 -22.62191 -22.08064 -21.51371 -19.78157 -18.69310 -18.53538 -17.98273 -17.55572 -17.44565 -16.97808 -16.54414 -16.38741 -16.09505 -15.82014 -15.71608 -15.08587 -14.83560 -14.72009 -14.56856 -14.46557 -14.30780 -13.83766 -13.34259 -13.27895 -13.11095 -12.95478 -12.93733 -12.92283 -12.61763 -12.55455 -12.28386 -11.96650 -11.75635 -11.69756 -11.46767 -10.83278 -10.61782 -10.56532 -10.23791 -10.00863 -9.08950 -8.23879 -6.35081 0.09417 0.22627 0.33261 1.25471 1.43249 1.45226 1.53351 2.01244 2.19367 2.37628 2.50796 2.77156 3.10992 3.12162 3.32649 3.42155 3.76515 4.02409 4.05622 4.19007 4.36411 4.37080 4.37436 4.43573 4.46989 4.58524 4.73709 4.79778 4.89652 4.94713 5.04298 5.04432 5.13902 5.30687 5.31515 5.40999 5.54010 5.59181 5.63294 5.73418 5.82413 6.11787 6.12314 6.26374 6.58768 6.77662 6.86008 7.34326 8.87823 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.002107 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.967118 B =13286.916900 C =13704.977972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.070 4.070 4 C -0.145 4.145 5 C 0.094 3.906 6 C -0.201 4.201 7 C -0.059 4.059 8 C 0.159 3.841 9 H 0.122 0.878 10 N -0.680 5.680 11 C 0.521 3.479 12 O -0.531 6.531 13 C 0.500 3.500 14 O -0.549 6.549 15 N -0.686 5.686 16 C 0.137 3.863 17 C 0.019 3.981 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.267 1.267 26 C 0.041 3.959 27 O -0.316 6.316 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.418 0.582 35 H 0.416 0.584 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.114 0.886 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 24.492 13.565 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.163 4.163 5 C 0.049 3.951 6 C -0.202 4.202 7 C -0.078 4.078 8 C 0.055 3.945 9 H 0.140 0.860 10 N -0.333 5.333 11 C 0.302 3.698 12 O -0.407 6.407 13 C 0.281 3.719 14 O -0.428 6.428 15 N -0.337 5.337 16 C 0.015 3.985 17 C -0.019 4.019 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.192 1.192 26 C -0.034 4.034 27 O -0.230 6.230 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.255 0.745 35 H 0.252 0.748 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.132 0.868 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.799 24.441 13.565 30.744 hybrid contribution 0.529 -1.028 -0.744 1.374 sum -12.271 23.413 12.822 29.379 Atomic orbital electron populations 1.20775 0.88812 1.03881 1.03066 1.20149 0.97684 0.92231 1.02066 1.21197 0.92300 0.99170 0.96097 1.20573 0.94196 0.95664 1.05909 1.19890 0.83057 0.95268 0.96926 1.20618 0.94969 0.93183 1.11477 1.20474 0.91224 0.99295 0.96760 1.21145 0.93471 0.94893 0.84999 0.86020 1.45811 1.60438 1.16440 1.10613 1.19975 0.78670 0.82350 0.88808 1.90765 1.48231 1.61788 1.39923 1.20257 0.79447 0.82668 0.89546 1.90735 1.49577 1.61763 1.40676 1.46056 1.58797 1.16980 1.11869 1.21495 1.00524 0.94894 0.81607 1.19172 0.95221 0.90396 0.97061 1.21417 1.40967 1.02475 0.93563 0.91739 1.25921 0.94771 0.97586 1.01153 1.70070 1.41657 1.13833 1.31108 0.85457 0.78806 0.77370 0.79170 1.19225 1.20857 1.19187 1.24393 0.97983 0.78605 1.02456 1.86842 1.20435 1.32953 1.82753 0.90656 0.91096 0.89898 0.82144 0.83901 0.84789 0.74510 0.74781 0.91984 0.92033 0.97348 0.97322 0.92561 0.86808 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.02 71.23 0.71 -0.13 16 2 C -0.12 -1.53 5.89 -19.83 -0.12 -1.65 16 3 C -0.07 -0.81 9.68 22.21 0.21 -0.60 16 4 C -0.14 -2.19 10.06 22.45 0.23 -1.96 16 5 C 0.09 1.82 7.04 22.68 0.16 1.98 16 6 C -0.20 -3.68 5.80 -19.53 -0.11 -3.80 16 7 C -0.06 -0.92 9.70 22.18 0.22 -0.71 16 8 C 0.16 3.08 3.40 45.13 0.15 3.24 16 9 H 0.12 2.29 7.72 -2.39 -0.02 2.27 16 10 N -0.68 -15.71 5.18 -443.22 -2.29 -18.00 16 11 C 0.52 14.83 7.89 87.27 0.69 15.52 16 12 O -0.53 -16.48 16.22 -3.23 -0.05 -16.53 16 13 C 0.50 16.86 7.89 87.27 0.69 17.55 16 14 O -0.55 -20.56 16.48 -3.26 -0.05 -20.62 16 15 N -0.69 -24.66 5.55 -464.41 -2.58 -27.24 16 16 C 0.14 5.73 5.61 86.38 0.48 6.22 16 17 C 0.02 0.95 5.09 29.85 0.15 1.11 16 18 C -0.55 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 20 C 0.00 0.25 5.46 84.66 0.46 0.71 16 21 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 22 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.04 0.76 7.73 72.56 0.56 1.32 16 27 O -0.32 -6.76 11.10 -95.03 -1.05 -7.81 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 30 H 0.08 0.39 8.09 -2.39 -0.02 0.38 16 31 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.42 9.58 8.08 -92.71 -0.75 8.83 16 35 H 0.42 14.23 7.94 -92.71 -0.74 13.49 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -66.80 366.10 0.58 -66.22 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.42 Total: 24.01 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.72 Total: 8.99 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.59 Total: -99.56 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.16 Total: -44.96 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.80 0.58 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323962222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.620 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds