Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 115.56381 * 2 1 4 4 C 1.53004 * 117.49728 * 214.31257 * 2 1 3 5 5 C 1.53006 * 60.00224 * 252.51158 * 4 2 1 6 6 H 1.09001 * 117.51619 * 252.52418 * 5 4 2 7 7 N 1.46496 * 117.49988 * 107.48756 * 5 4 2 8 8 C 1.34777 * 120.00135 * 136.38230 * 7 5 4 9 9 O 1.21369 * 119.99522 * 359.97438 * 8 7 5 10 10 C 1.49313 * 120.00488 * 180.02562 * 8 7 5 11 11 O 1.21388 * 119.99596 * 359.97438 * 10 8 7 12 12 N 1.34771 * 120.00151 * 180.02562 * 10 8 7 13 13 C 1.39743 * 120.00134 * 184.51645 * 12 10 8 14 14 C 1.39008 * 120.00377 * 324.60941 * 13 12 10 15 15 C 1.37969 * 119.99119 * 179.79005 * 14 13 12 16 16 C 1.38936 * 120.00549 * 0.48906 * 15 14 13 17 17 O 1.35760 * 119.99190 * 179.72310 * 16 15 14 18 18 C 1.34803 * 117.00148 * 185.36647 * 17 16 15 19 19 H 1.08002 * 119.99762 * 354.96817 * 18 17 16 20 20 C 1.38649 * 120.00177 * 174.96365 * 18 17 16 21 21 N 1.31563 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47344 * 120.00169 * 22 20 18 25 25 H 1.48505 * 109.46814 * 239.99614 * 22 20 18 26 26 C 1.38937 * 120.01777 * 359.74269 * 16 15 14 27 27 C 1.37968 * 120.00434 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47153 * 274.30905 * 1 2 3 29 29 H 1.08997 * 109.47015 * 34.30676 * 1 2 3 30 30 H 1.09001 * 109.47456 * 154.30979 * 1 2 3 31 31 H 1.08997 * 109.47019 * 205.68683 * 3 2 1 32 32 H 1.08999 * 109.47187 * 325.69438 * 3 2 1 33 33 H 1.09000 * 109.46627 * 85.68655 * 3 2 1 34 34 H 1.08996 * 117.49900 * 145.02501 * 4 2 1 35 35 H 1.08999 * 117.49986 * 359.97438 * 4 2 1 36 36 H 0.97007 * 120.00325 * 316.38066 * 7 5 4 37 37 H 0.96997 * 120.00060 * 4.50741 * 12 10 8 38 38 H 1.07998 * 119.99954 * 0.02562 * 14 13 12 39 39 H 1.07988 * 119.99516 * 180.23400 * 15 14 13 40 40 H 0.97000 * 119.99825 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.99907 * 180.02562 * 26 16 15 42 42 H 1.08001 * 120.00258 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1211 0.7650 6 1 3.1714 -0.8752 1.2686 7 7 1.3961 -2.1123 1.4414 8 6 1.8760 -2.7914 2.5020 9 8 3.0046 -2.5821 2.8964 10 6 1.0197 -3.8021 3.1911 11 8 -0.1088 -4.0117 2.7963 12 7 1.4995 -4.4808 4.2520 13 6 0.7344 -5.4925 4.8384 14 6 -0.6485 -5.3682 4.9052 15 6 -1.4039 -6.3693 5.4802 16 6 -0.7818 -7.4968 6.0016 17 8 -1.5250 -8.4791 6.5725 18 6 -0.8549 -9.4921 7.1574 19 1 0.2218 -9.5390 7.0870 20 6 -1.5479 -10.4735 7.8494 21 7 -2.8594 -10.4159 7.9356 22 14 -0.6192 -11.8767 8.6605 23 1 0.8367 -11.7118 8.4190 24 1 -0.8834 -11.8660 10.1218 25 1 -1.0728 -13.1684 8.0851 26 6 0.6008 -7.6192 5.9393 27 6 1.3564 -6.6207 5.3601 28 1 -0.3633 0.0772 1.0248 29 1 -0.3633 0.8489 -0.5792 30 1 -0.3634 -0.9261 -0.4455 31 1 3.1824 1.3083 -0.4454 32 1 1.5812 2.0743 -0.5792 33 1 2.2772 1.7412 1.0248 34 1 3.1715 -0.8752 -1.2683 35 1 1.6112 -1.8587 -1.2680 36 1 0.4942 -2.2798 1.1259 37 1 2.3759 -4.2670 4.6085 38 1 -1.1317 -4.4898 4.5035 39 1 -2.4785 -6.2745 5.5288 40 1 -3.3443 -11.1027 8.4194 41 1 1.0840 -8.4961 6.3444 42 1 2.4311 -6.7161 5.3114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325243811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = -41.782880 kcal Electronic energy + Delta-G solvation = -25119.247333 eV Core-core repulsion = 21259.256766 eV Total energy + Delta-G solvation = -3859.990567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98241 -39.67469 -38.77559 -38.07317 -36.62536 -34.37368 -33.45663 -32.23916 -30.29676 -29.48222 -28.35674 -27.95999 -25.69514 -24.91886 -22.52696 -22.18016 -21.23259 -20.33097 -19.71804 -18.62445 -18.04621 -17.35629 -16.94915 -16.21934 -15.96056 -15.89974 -14.80374 -14.63200 -14.57839 -14.37251 -14.19711 -14.04566 -13.62673 -13.50236 -13.39750 -13.01066 -12.89175 -12.70020 -12.60176 -12.21324 -11.97395 -11.74350 -11.65957 -11.61416 -11.50845 -11.48075 -11.09840 -10.77216 -10.47074 -10.26470 -9.77429 -9.61060 -9.32352 -9.14272 -8.78540 -8.28231 -7.03343 -6.49771 -4.07483 1.18750 2.07795 2.13311 2.31034 3.04056 3.11258 3.12004 3.17206 3.40701 3.51075 3.93014 4.16136 4.32655 4.36421 4.40699 4.52058 4.59308 5.04956 5.13964 5.20268 5.25442 5.32083 5.40093 5.45289 5.47982 5.50339 5.51238 5.70102 5.70745 5.83826 5.98455 6.01565 6.12401 6.15983 6.68458 6.72499 6.77661 6.94985 7.04685 7.16500 7.31398 7.44924 7.63529 7.69918 7.94607 8.04851 8.95505 9.64567 10.67904 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040561 B = 0.002058 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.159324 B =13604.875601 C =14043.458446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.115 4.115 4 C -0.181 4.181 5 C 0.082 3.918 6 H 0.141 0.859 7 N -0.673 5.673 8 C 0.516 3.484 9 O -0.520 6.520 10 C 0.497 3.503 11 O -0.509 6.509 12 N -0.622 5.622 13 C 0.021 3.979 14 C -0.063 4.063 15 C -0.180 4.180 16 C 0.151 3.849 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.220 4.220 27 C -0.080 4.080 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.415 0.585 37 H 0.414 0.586 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.270 0.730 41 H 0.134 0.866 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 18.978 -13.905 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.135 4.135 3 C -0.172 4.172 4 C -0.220 4.220 5 C -0.024 4.024 6 H 0.158 0.842 7 N -0.325 5.325 8 C 0.298 3.702 9 O -0.395 6.395 10 C 0.278 3.722 11 O -0.385 6.385 12 N -0.268 5.268 13 C -0.071 4.071 14 C -0.083 4.083 15 C -0.200 4.200 16 C 0.097 3.903 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.494 5.494 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.240 4.240 27 C -0.100 4.100 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.251 0.749 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.151 0.849 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.442 18.784 -13.769 25.131 hybrid contribution 0.564 -0.766 0.330 1.007 sum 10.006 18.017 -13.438 24.603 Atomic orbital electron populations 1.21375 0.91560 1.02498 1.02517 1.22091 0.95625 0.91908 1.03873 1.21366 1.00078 0.93455 1.02328 1.23793 1.03081 1.00923 0.94179 1.21896 0.96932 0.92162 0.91426 0.84154 1.45088 1.18354 1.38717 1.30337 1.20174 0.87102 0.81901 0.81059 1.90753 1.18880 1.65376 1.64532 1.19935 0.87478 0.83167 0.81598 1.90773 1.18262 1.64944 1.64543 1.42834 1.21196 1.34003 1.28721 1.17240 0.90958 0.90915 1.07959 1.20728 0.91735 0.98701 0.97134 1.20132 0.99897 0.93575 1.06371 1.19456 0.90145 0.88819 0.91927 1.83981 1.33902 1.28125 1.61570 1.21396 0.92341 1.01035 1.32073 0.88878 1.25317 0.95879 0.98609 0.96751 1.70051 1.06176 1.34004 1.39143 0.85628 0.79132 0.79714 0.78839 1.19050 1.20099 1.20119 1.20987 0.93709 1.01174 1.08150 1.20517 0.98792 0.91809 0.98913 0.91695 0.91485 0.92160 0.92104 0.91702 0.91868 0.87691 0.88152 0.74811 0.74941 0.85277 0.85932 0.91967 0.84884 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 8.85 37.16 0.33 -0.41 16 2 C -0.13 -0.86 2.70 -154.50 -0.42 -1.28 16 3 C -0.11 -0.60 9.85 37.16 0.37 -0.24 16 4 C -0.18 -1.17 9.75 -26.73 -0.26 -1.43 16 5 C 0.08 0.68 6.13 -67.92 -0.42 0.26 16 6 H 0.14 1.26 7.40 -51.93 -0.38 0.88 16 7 N -0.67 -6.71 5.34 -54.27 -0.29 -7.00 16 8 C 0.52 6.49 7.88 -11.65 -0.09 6.40 16 9 O -0.52 -7.30 16.05 5.48 0.09 -7.22 16 10 C 0.50 7.21 7.72 -11.65 -0.09 7.12 16 11 O -0.51 -8.42 13.92 5.46 0.08 -8.34 16 12 N -0.62 -9.10 5.32 -10.27 -0.05 -9.16 16 13 C 0.02 0.38 6.29 -83.69 -0.53 -0.15 16 14 C -0.06 -1.21 8.69 -39.39 -0.34 -1.55 16 15 C -0.18 -3.85 9.98 -39.42 -0.39 -4.25 16 16 C 0.15 3.60 6.65 -39.06 -0.26 3.34 16 17 O -0.17 -4.86 9.75 0.10 0.00 -4.86 16 18 C -0.39 -10.74 9.48 30.88 0.29 -10.45 16 19 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 22 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.22 -4.65 9.16 -39.42 -0.36 -5.01 16 27 C -0.08 -1.43 9.96 -39.40 -0.39 -1.83 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 30 H 0.06 0.35 7.61 -51.93 -0.40 -0.04 16 31 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 32 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.56 8.05 -51.93 -0.42 0.15 16 35 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.41 3.81 7.16 -40.82 -0.29 3.52 16 37 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 38 H 0.13 2.35 6.24 -52.49 -0.33 2.03 16 39 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -31.69 361.60 -6.86 -38.55 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.20 Total: 10.05 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.66 Total: -8.51 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.41 Total: -40.27 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.16 Total: -20.41 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.69 -6.86 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325243811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.233 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds