Wall clock time and date at job start Tue Mar 31 2020 13:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 115.56381 * 2 1 4 4 C 1.53004 * 117.49728 * 214.31257 * 2 1 3 5 5 C 1.53006 * 60.00224 * 252.51158 * 4 2 1 6 6 H 1.09001 * 117.51619 * 252.52418 * 5 4 2 7 7 N 1.46496 * 117.49988 * 107.48756 * 5 4 2 8 8 C 1.34777 * 120.00135 * 136.38230 * 7 5 4 9 9 O 1.21369 * 119.99522 * 359.97438 * 8 7 5 10 10 C 1.49313 * 120.00488 * 180.02562 * 8 7 5 11 11 O 1.21388 * 119.99596 * 359.97438 * 10 8 7 12 12 N 1.34771 * 120.00151 * 180.02562 * 10 8 7 13 13 C 1.39743 * 120.00134 * 184.51645 * 12 10 8 14 14 C 1.39008 * 120.00377 * 324.60941 * 13 12 10 15 15 C 1.37969 * 119.99119 * 179.79005 * 14 13 12 16 16 C 1.38936 * 120.00549 * 0.48906 * 15 14 13 17 17 O 1.35760 * 119.99190 * 179.72310 * 16 15 14 18 18 C 1.34803 * 117.00148 * 185.36647 * 17 16 15 19 19 H 1.08002 * 119.99762 * 354.96817 * 18 17 16 20 20 C 1.38649 * 120.00177 * 174.96365 * 18 17 16 21 21 N 1.31563 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47344 * 120.00169 * 22 20 18 25 25 H 1.48505 * 109.46814 * 239.99614 * 22 20 18 26 26 C 1.38937 * 120.01777 * 359.74269 * 16 15 14 27 27 C 1.37968 * 120.00434 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47153 * 274.30905 * 1 2 3 29 29 H 1.08997 * 109.47015 * 34.30676 * 1 2 3 30 30 H 1.09001 * 109.47456 * 154.30979 * 1 2 3 31 31 H 1.08997 * 109.47019 * 205.68683 * 3 2 1 32 32 H 1.08999 * 109.47187 * 325.69438 * 3 2 1 33 33 H 1.09000 * 109.46627 * 85.68655 * 3 2 1 34 34 H 1.08996 * 117.49900 * 145.02501 * 4 2 1 35 35 H 1.08999 * 117.49986 * 359.97438 * 4 2 1 36 36 H 0.97007 * 120.00325 * 316.38066 * 7 5 4 37 37 H 0.96997 * 120.00060 * 4.50741 * 12 10 8 38 38 H 1.07998 * 119.99954 * 0.02562 * 14 13 12 39 39 H 1.07988 * 119.99516 * 180.23400 * 15 14 13 40 40 H 0.97000 * 119.99825 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.99907 * 180.02562 * 26 16 15 42 42 H 1.08001 * 120.00258 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1211 0.7650 6 1 3.1714 -0.8752 1.2686 7 7 1.3961 -2.1123 1.4414 8 6 1.8760 -2.7914 2.5020 9 8 3.0046 -2.5821 2.8964 10 6 1.0197 -3.8021 3.1911 11 8 -0.1088 -4.0117 2.7963 12 7 1.4995 -4.4808 4.2520 13 6 0.7344 -5.4925 4.8384 14 6 -0.6485 -5.3682 4.9052 15 6 -1.4039 -6.3693 5.4802 16 6 -0.7818 -7.4968 6.0016 17 8 -1.5250 -8.4791 6.5725 18 6 -0.8549 -9.4921 7.1574 19 1 0.2218 -9.5390 7.0870 20 6 -1.5479 -10.4735 7.8494 21 7 -2.8594 -10.4159 7.9356 22 14 -0.6192 -11.8767 8.6605 23 1 0.8367 -11.7118 8.4190 24 1 -0.8834 -11.8660 10.1218 25 1 -1.0728 -13.1684 8.0851 26 6 0.6008 -7.6192 5.9393 27 6 1.3564 -6.6207 5.3601 28 1 -0.3633 0.0772 1.0248 29 1 -0.3633 0.8489 -0.5792 30 1 -0.3634 -0.9261 -0.4455 31 1 3.1824 1.3083 -0.4454 32 1 1.5812 2.0743 -0.5792 33 1 2.2772 1.7412 1.0248 34 1 3.1715 -0.8752 -1.2683 35 1 1.6112 -1.8587 -1.2680 36 1 0.4942 -2.2798 1.1259 37 1 2.3759 -4.2670 4.6085 38 1 -1.1317 -4.4898 4.5035 39 1 -2.4785 -6.2745 5.5288 40 1 -3.3443 -11.1027 8.4194 41 1 1.0840 -8.4961 6.3444 42 1 2.4311 -6.7161 5.3114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325243811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:31 Heat of formation + Delta-G solvation = -63.230891 kcal Electronic energy + Delta-G solvation = -25120.177388 eV Core-core repulsion = 21259.256766 eV Total energy + Delta-G solvation = -3860.920623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13354 -40.92023 -40.13507 -39.01568 -38.22086 -35.72091 -34.44623 -34.14447 -31.92722 -30.17078 -29.75886 -28.42454 -27.47801 -26.19873 -24.00703 -23.33876 -22.43472 -21.52243 -20.49466 -19.90270 -19.54589 -18.96337 -18.15550 -17.61138 -17.05675 -16.88205 -16.38263 -16.12468 -15.63085 -15.51355 -15.35240 -15.25973 -15.01278 -14.64993 -14.58570 -14.20855 -13.96963 -13.65170 -13.57273 -13.38141 -13.25904 -13.14349 -12.83138 -12.73790 -12.64903 -12.42258 -12.20737 -12.09707 -12.07784 -11.38269 -11.16411 -10.88939 -10.68309 -10.62477 -9.89086 -9.86401 -8.71361 -8.46577 -6.13772 0.00879 0.49884 0.65995 1.16015 1.37843 1.45588 1.56083 1.98044 2.18475 2.47505 2.76665 2.80185 3.13119 3.26300 3.48625 3.59704 3.82047 3.85853 4.01542 4.09126 4.12901 4.45732 4.52197 4.54519 4.65182 4.76085 4.81062 4.88415 5.01471 5.02981 5.03428 5.05518 5.13026 5.20663 5.23443 5.27653 5.37347 5.40713 5.45955 5.62410 5.85606 6.01678 6.07979 6.26202 6.64501 6.83890 6.97903 7.76834 8.76483 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040561 B = 0.002058 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.159324 B =13604.875601 C =14043.458446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.170 4.170 5 C 0.057 3.943 6 H 0.134 0.866 7 N -0.660 5.660 8 C 0.523 3.477 9 O -0.535 6.535 10 C 0.501 3.499 11 O -0.528 6.528 12 N -0.618 5.618 13 C 0.048 3.952 14 C -0.065 4.065 15 C -0.188 4.188 16 C 0.114 3.886 17 O -0.227 6.227 18 C -0.413 4.413 19 H 0.108 0.892 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.248 1.248 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.221 4.221 27 C -0.072 4.072 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.419 0.581 37 H 0.429 0.571 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.134 0.866 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 20.587 -15.459 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.125 4.125 3 C -0.173 4.173 4 C -0.208 4.208 5 C -0.048 4.048 6 H 0.151 0.849 7 N -0.311 5.311 8 C 0.303 3.697 9 O -0.412 6.412 10 C 0.283 3.717 11 O -0.405 6.405 12 N -0.265 5.265 13 C -0.045 4.045 14 C -0.085 4.085 15 C -0.208 4.208 16 C 0.063 3.937 17 O -0.133 6.133 18 C -0.489 4.489 19 H 0.125 0.875 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.171 1.171 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.241 4.241 27 C -0.091 4.091 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.257 0.743 37 H 0.268 0.732 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.253 20.473 -15.380 28.386 hybrid contribution -0.195 -0.885 0.552 1.061 sum 12.058 19.587 -14.828 27.366 Atomic orbital electron populations 1.21420 0.91335 1.03175 1.02309 1.22183 0.95817 0.92168 1.02313 1.21405 1.00646 0.92807 1.02439 1.23872 1.03742 1.00660 0.92518 1.22074 0.97037 0.93152 0.92526 0.84857 1.45082 1.18630 1.38090 1.29251 1.19688 0.86527 0.81841 0.81625 1.90759 1.19251 1.66015 1.65222 1.20334 0.87273 0.82886 0.81167 1.90774 1.19289 1.65418 1.64996 1.42770 1.21546 1.33296 1.28886 1.17353 0.90674 0.91121 1.05349 1.20867 0.92566 0.98315 0.96777 1.20274 1.00176 0.93743 1.06573 1.19925 0.91592 0.89126 0.93040 1.83954 1.35512 1.29717 1.64117 1.21923 0.93196 1.01372 1.32371 0.87507 1.26621 0.96837 1.01452 0.97233 1.70199 1.08285 1.35758 1.41516 0.84505 0.78430 0.75586 0.77548 1.17098 1.19508 1.19581 1.21121 0.92741 1.02113 1.08080 1.20843 1.00697 0.90411 0.97193 0.92432 0.90283 0.92013 0.91309 0.90681 0.92197 0.86280 0.87893 0.74327 0.73189 0.84199 0.86383 0.91838 0.84823 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.85 71.98 0.64 -0.61 16 2 C -0.12 -1.29 2.70 -52.18 -0.14 -1.43 16 3 C -0.12 -0.92 9.85 71.98 0.71 -0.21 16 4 C -0.17 -1.74 9.75 30.60 0.30 -1.44 16 5 C 0.06 0.83 6.13 45.00 0.28 1.10 16 6 H 0.13 2.17 7.40 -2.39 -0.02 2.15 16 7 N -0.66 -11.84 5.34 -443.98 -2.37 -14.21 16 8 C 0.52 12.01 7.88 87.23 0.69 12.69 16 9 O -0.54 -13.84 16.05 -3.31 -0.05 -13.89 16 10 C 0.50 13.38 7.72 87.23 0.67 14.05 16 11 O -0.53 -16.46 13.92 -3.36 -0.05 -16.50 16 12 N -0.62 -16.29 5.32 -304.75 -1.62 -17.91 16 13 C 0.05 1.59 6.29 38.25 0.24 1.83 16 14 C -0.07 -2.45 8.69 22.39 0.19 -2.25 16 15 C -0.19 -8.25 9.98 22.37 0.22 -8.03 16 16 C 0.11 5.62 6.65 22.60 0.15 5.77 16 17 O -0.23 -13.46 9.75 -22.57 -0.22 -13.68 16 18 C -0.41 -23.46 9.48 67.92 0.64 -22.82 16 19 H 0.11 5.47 5.19 -2.91 -0.02 5.46 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 21 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 22 Si 1.02 42.05 29.55 68.60 2.03 44.07 16 23 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 C -0.22 -9.20 9.16 22.37 0.20 -9.00 16 27 C -0.07 -2.37 9.96 22.39 0.22 -2.15 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.61 7.92 -2.39 -0.02 0.59 16 30 H 0.06 0.60 7.61 -2.39 -0.02 0.58 16 31 H 0.07 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.07 0.46 7.92 -2.39 -0.02 0.44 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.12 0.91 8.05 -2.39 -0.02 0.89 16 35 H 0.10 1.03 8.05 -2.39 -0.02 1.02 16 36 H 0.42 6.89 7.16 -92.70 -0.66 6.22 16 37 H 0.43 9.15 8.30 -92.71 -0.77 8.39 16 38 H 0.14 4.94 6.24 -2.91 -0.02 4.92 16 39 H 0.12 5.15 8.06 -2.92 -0.02 5.12 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.13 5.50 5.63 -2.91 -0.02 5.48 16 42 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -71.91 361.60 3.15 -68.75 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.35 Total: 32.39 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 5.49 Total: -13.35 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.69 Total: -87.80 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.32 Total: -44.07 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.91 3.15 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325243811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.524 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds