Wall clock time and date at job start Tue Mar 31 2020 12:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00664 * 2 1 4 4 H 1.48497 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47112 * 300.00271 * 3 2 1 6 6 H 1.48503 * 109.47029 * 59.99960 * 3 2 1 7 7 C 1.38662 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00018 * 359.71765 * 7 2 1 10 10 C 1.35753 * 116.99840 * 174.90106 * 9 7 2 11 11 C 1.38896 * 120.06847 * 5.22604 * 10 9 7 12 12 C 1.38078 * 119.92941 * 179.75060 * 11 10 9 13 13 C 1.38321 * 120.07202 * 0.52792 * 12 11 10 14 14 C 1.38286 * 120.13497 * 359.74913 * 13 12 11 15 15 C 1.50695 * 119.96226 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.46796 * 269.97481 * 15 14 13 17 17 C 1.34781 * 119.99640 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00188 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99362 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.40267 * 299.99118 * 19 17 16 21 21 C 1.53073 * 109.39883 * 180.16799 * 19 17 16 22 22 C 1.53346 * 108.42716 * 190.96836 * 21 19 17 23 23 C 1.52912 * 108.67184 * 67.53212 * 22 21 19 24 24 N 1.45755 * 110.49163 * 309.24788 * 23 22 21 25 25 C 1.33239 * 124.06798 * 19.15422 * 24 23 22 26 26 O 1.21273 * 118.15692 * 177.71373 * 25 24 23 27 27 C 1.38118 * 120.06719 * 359.97438 * 14 13 12 28 28 H 0.97009 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.03677 * 0.02700 * 11 10 9 30 30 H 1.08005 * 119.96406 * 180.27834 * 12 11 10 31 31 H 1.08001 * 119.93525 * 179.72501 * 13 12 11 32 32 H 1.08996 * 109.48022 * 29.97355 * 15 14 13 33 33 H 1.09004 * 109.47019 * 149.97965 * 15 14 13 34 34 H 0.97001 * 120.00221 * 359.97438 * 16 15 14 35 35 H 1.08995 * 109.67579 * 310.71156 * 21 19 17 36 36 H 1.09006 * 109.67061 * 71.19967 * 21 19 17 37 37 H 1.08996 * 109.60076 * 187.28675 * 22 21 19 38 38 H 1.09003 * 109.60095 * 307.61504 * 22 21 19 39 39 H 1.08999 * 109.30639 * 69.55891 * 23 22 21 40 40 H 1.09005 * 109.30266 * 189.14027 * 23 22 21 41 41 H 0.96998 * 117.95222 * 199.07947 * 24 23 22 42 42 H 1.08004 * 120.03405 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 0.0047 10 6 2.0691 -3.5049 -0.1037 11 6 3.4566 -3.4392 -0.1041 12 6 4.2010 -4.5974 -0.2092 13 6 3.5665 -5.8210 -0.3251 14 6 2.1854 -5.8891 -0.3308 15 6 1.4982 -7.2244 -0.4566 16 7 1.2743 -7.5267 -1.8725 17 6 0.6693 -8.6774 -2.2284 18 8 0.3108 -9.4626 -1.3765 19 6 0.4395 -8.9886 -3.6849 20 1 -0.1869 -8.2135 -4.1263 21 6 -0.2630 -10.3428 -3.8107 22 6 -0.2396 -10.7659 -5.2845 23 6 1.2062 -11.0597 -5.6865 24 7 2.0758 -9.9526 -5.3090 25 6 1.7592 -9.0312 -4.4002 26 8 2.5819 -8.1796 -4.1381 27 6 1.4351 -4.7348 -0.2202 28 1 -0.4850 0.8402 0.0004 29 1 3.9526 -2.4838 -0.0177 30 1 5.2799 -4.5474 -0.2051 31 1 4.1510 -6.7251 -0.4117 32 1 2.1249 -7.9988 -0.0145 33 1 0.5409 -7.1908 0.0635 34 1 1.5607 -6.8985 -2.5539 35 1 0.2599 -11.0849 -3.2074 36 1 -1.2946 -10.2541 -3.4702 37 1 -0.8454 -11.6622 -5.4172 38 1 -0.6371 -9.9608 -5.9024 39 1 1.5419 -11.9681 -5.1863 40 1 1.2580 -11.2027 -6.7659 41 1 2.9390 -9.8831 -5.7460 42 1 0.3565 -4.7886 -0.2243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331525820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:00 Heat of formation + Delta-G solvation = -81.617586 kcal Electronic energy + Delta-G solvation = -25802.038500 eV Core-core repulsion = 21940.320571 eV Total energy + Delta-G solvation = -3861.717930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11253 -39.30141 -38.77479 -36.95165 -36.65325 -34.39951 -33.40858 -32.29143 -30.94198 -30.08143 -29.04470 -26.35324 -25.33402 -24.49516 -23.11305 -21.65726 -21.01421 -20.68947 -19.43635 -18.05430 -17.60595 -17.24993 -16.90131 -16.67569 -15.80309 -15.27748 -15.22747 -14.92038 -14.57797 -14.51471 -14.37534 -14.00955 -13.90137 -13.66736 -13.53975 -13.29439 -12.64531 -12.40561 -12.29557 -12.04931 -11.83374 -11.71993 -11.62766 -11.40133 -11.34159 -10.92050 -10.75272 -10.63013 -10.43033 -10.12841 -9.90539 -9.46414 -9.35482 -8.88332 -8.85352 -8.17391 -7.26393 -6.45530 -4.04643 1.95209 2.20272 2.34479 2.53165 3.00909 3.11797 3.13638 3.19207 3.40216 3.95997 4.13392 4.25983 4.31549 4.36864 4.58121 4.83929 4.89575 4.92871 5.00494 5.11836 5.16796 5.30835 5.34089 5.40944 5.58988 5.60329 5.80489 5.84649 5.90832 5.97164 6.14214 6.31444 6.37856 6.56154 6.62004 6.88164 6.88808 7.05317 7.25702 7.33946 7.40646 7.63490 7.78074 7.85222 7.99229 8.26114 9.00245 9.69887 10.72562 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002527 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.574792 B =11079.017408 C =11224.937370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.189 4.189 14 C -0.072 4.072 15 C 0.167 3.833 16 N -0.701 5.701 17 C 0.527 3.473 18 O -0.544 6.544 19 C -0.128 4.128 20 H 0.131 0.869 21 C -0.105 4.105 22 C -0.139 4.139 23 C 0.107 3.893 24 N -0.717 5.717 25 C 0.527 3.473 26 O -0.537 6.537 27 C -0.171 4.171 28 H 0.269 0.731 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.403 0.597 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -20.498 -11.838 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.097 3.903 11 C -0.244 4.244 12 C -0.095 4.095 13 C -0.208 4.208 14 C -0.073 4.073 15 C 0.044 3.956 16 N -0.353 5.353 17 C 0.311 3.689 18 O -0.422 6.422 19 C -0.152 4.152 20 H 0.149 0.851 21 C -0.143 4.143 22 C -0.176 4.176 23 C -0.017 4.017 24 N -0.369 5.369 25 C 0.313 3.687 26 O -0.413 6.413 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.239 0.761 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.936 -20.391 -10.936 23.158 hybrid contribution 0.976 1.178 -0.603 1.644 sum 1.912 -19.214 -11.539 22.494 Atomic orbital electron populations 1.70053 1.05953 1.27547 1.46195 1.25290 0.95846 0.98826 0.96568 0.85645 0.79141 0.80379 0.78248 1.19105 1.20145 1.20143 1.21370 0.91816 0.80796 1.52803 0.89026 1.83981 1.34286 1.11368 1.78516 1.19308 0.90261 0.88045 0.92722 1.21240 0.93851 0.99040 1.10286 1.20742 0.98573 0.92239 0.97934 1.20487 0.93378 0.97172 1.09782 1.19247 0.93540 0.92820 1.01658 1.20181 1.00013 0.93856 0.81508 1.46175 1.58778 1.21002 1.09298 1.19742 0.78080 0.81821 0.89264 1.90697 1.51737 1.48217 1.51569 1.21486 0.96322 1.02458 0.94917 0.85096 1.21515 1.02166 0.94419 0.96183 1.21930 0.95696 1.03306 0.96712 1.21456 0.90558 0.89104 1.00582 1.45343 1.21635 1.28058 1.41904 1.19580 0.88608 0.81161 0.79389 1.90818 1.49193 1.37746 1.63591 1.20067 0.99368 0.89805 1.09865 0.92076 0.85467 0.87296 0.87524 0.91030 0.90756 0.75036 0.89871 0.89643 0.89155 0.90645 0.91344 0.90290 0.76110 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 10 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.40 9.70 -39.53 -0.38 -3.78 16 14 C -0.07 -1.32 5.25 -104.65 -0.55 -1.87 16 15 C 0.17 2.68 5.80 -5.19 -0.03 2.65 16 16 N -0.70 -10.61 5.03 -61.47 -0.31 -10.92 16 17 C 0.53 7.50 7.06 -10.98 -0.08 7.43 16 18 O -0.54 -9.09 15.79 5.56 0.09 -9.00 16 19 C -0.13 -1.31 2.78 -93.14 -0.26 -1.57 16 20 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 21 C -0.10 -0.81 4.78 -26.51 -0.13 -0.94 16 22 C -0.14 -0.63 6.02 -26.60 -0.16 -0.79 16 23 C 0.11 0.47 7.17 -4.49 -0.03 0.44 16 24 N -0.72 -5.37 5.44 -61.42 -0.33 -5.71 16 25 C 0.53 5.83 7.27 -11.92 -0.09 5.74 16 26 O -0.54 -7.99 15.55 5.56 0.09 -7.90 16 27 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 30 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.41 6.36 7.12 -40.82 -0.29 6.06 16 35 H 0.08 0.76 7.72 -51.93 -0.40 0.35 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.40 2.65 8.80 -40.82 -0.36 2.29 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -34.39 354.39 -7.70 -42.09 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.40 Total: 10.32 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.91 Total: -10.13 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.11 Total: -41.19 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.39 -7.70 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331525820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.526 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds