Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00664 * 2 1 4 4 H 1.48497 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47112 * 300.00271 * 3 2 1 6 6 H 1.48503 * 109.47029 * 59.99960 * 3 2 1 7 7 C 1.38662 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00018 * 359.71765 * 7 2 1 10 10 C 1.35753 * 116.99840 * 174.90106 * 9 7 2 11 11 C 1.38896 * 120.06847 * 5.22604 * 10 9 7 12 12 C 1.38078 * 119.92941 * 179.75060 * 11 10 9 13 13 C 1.38321 * 120.07202 * 0.52792 * 12 11 10 14 14 C 1.38286 * 120.13497 * 359.74913 * 13 12 11 15 15 C 1.50695 * 119.96226 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.46796 * 269.97481 * 15 14 13 17 17 C 1.34781 * 119.99640 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00188 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99362 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.40267 * 299.99118 * 19 17 16 21 21 C 1.53073 * 109.39883 * 180.16799 * 19 17 16 22 22 C 1.53346 * 108.42716 * 190.96836 * 21 19 17 23 23 C 1.52912 * 108.67184 * 67.53212 * 22 21 19 24 24 N 1.45755 * 110.49163 * 309.24788 * 23 22 21 25 25 C 1.33239 * 124.06798 * 19.15422 * 24 23 22 26 26 O 1.21273 * 118.15692 * 177.71373 * 25 24 23 27 27 C 1.38118 * 120.06719 * 359.97438 * 14 13 12 28 28 H 0.97009 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.03677 * 0.02700 * 11 10 9 30 30 H 1.08005 * 119.96406 * 180.27834 * 12 11 10 31 31 H 1.08001 * 119.93525 * 179.72501 * 13 12 11 32 32 H 1.08996 * 109.48022 * 29.97355 * 15 14 13 33 33 H 1.09004 * 109.47019 * 149.97965 * 15 14 13 34 34 H 0.97001 * 120.00221 * 359.97438 * 16 15 14 35 35 H 1.08995 * 109.67579 * 310.71156 * 21 19 17 36 36 H 1.09006 * 109.67061 * 71.19967 * 21 19 17 37 37 H 1.08996 * 109.60076 * 187.28675 * 22 21 19 38 38 H 1.09003 * 109.60095 * 307.61504 * 22 21 19 39 39 H 1.08999 * 109.30639 * 69.55891 * 23 22 21 40 40 H 1.09005 * 109.30266 * 189.14027 * 23 22 21 41 41 H 0.96998 * 117.95222 * 199.07947 * 24 23 22 42 42 H 1.08004 * 120.03405 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 0.0047 10 6 2.0691 -3.5049 -0.1037 11 6 3.4566 -3.4392 -0.1041 12 6 4.2010 -4.5974 -0.2092 13 6 3.5665 -5.8210 -0.3251 14 6 2.1854 -5.8891 -0.3308 15 6 1.4982 -7.2244 -0.4566 16 7 1.2743 -7.5267 -1.8725 17 6 0.6693 -8.6774 -2.2284 18 8 0.3108 -9.4626 -1.3765 19 6 0.4395 -8.9886 -3.6849 20 1 -0.1869 -8.2135 -4.1263 21 6 -0.2630 -10.3428 -3.8107 22 6 -0.2396 -10.7659 -5.2845 23 6 1.2062 -11.0597 -5.6865 24 7 2.0758 -9.9526 -5.3090 25 6 1.7592 -9.0312 -4.4002 26 8 2.5819 -8.1796 -4.1381 27 6 1.4351 -4.7348 -0.2202 28 1 -0.4850 0.8402 0.0004 29 1 3.9526 -2.4838 -0.0177 30 1 5.2799 -4.5474 -0.2051 31 1 4.1510 -6.7251 -0.4117 32 1 2.1249 -7.9988 -0.0145 33 1 0.5409 -7.1908 0.0635 34 1 1.5607 -6.8985 -2.5539 35 1 0.2599 -11.0849 -3.2074 36 1 -1.2946 -10.2541 -3.4702 37 1 -0.8454 -11.6622 -5.4172 38 1 -0.6371 -9.9608 -5.9024 39 1 1.5419 -11.9681 -5.1863 40 1 1.2580 -11.2027 -6.7659 41 1 2.9390 -9.8831 -5.7460 42 1 0.3565 -4.7886 -0.2243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331525820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -107.025021 kcal Electronic energy + Delta-G solvation = -25803.140249 eV Core-core repulsion = 21940.320571 eV Total energy + Delta-G solvation = -3862.819679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.99567 -40.88837 -40.02546 -38.49792 -37.54246 -35.74959 -34.30401 -34.13117 -32.29599 -31.02165 -30.62228 -27.73053 -27.06535 -25.46442 -23.78662 -23.29877 -22.51367 -21.89235 -20.22300 -19.60247 -18.96868 -18.46867 -18.09610 -17.56064 -16.97850 -16.79904 -16.51823 -16.15171 -15.99588 -15.73629 -15.53430 -15.23063 -15.17506 -14.78627 -14.61183 -14.37799 -14.29823 -13.94517 -13.67813 -13.34126 -13.07403 -12.97290 -12.61376 -12.42189 -12.36230 -12.30314 -12.23606 -12.09080 -11.93790 -11.26627 -11.14629 -10.86645 -10.81279 -10.14254 -10.07292 -9.78328 -9.05704 -8.48006 -6.16487 0.35675 0.67716 1.25778 1.35244 1.43167 1.53538 1.56071 2.16120 2.20851 2.36089 2.83603 3.15040 3.35868 3.44518 3.50572 3.72635 3.82310 3.87068 4.05400 4.17329 4.23899 4.27587 4.37481 4.49331 4.51974 4.61218 4.69429 4.76862 4.85321 4.97989 5.06388 5.08794 5.10771 5.22889 5.30169 5.36437 5.59011 5.67245 5.69055 5.78188 6.00572 6.12918 6.20956 6.45334 6.96724 7.05826 7.12973 7.76297 8.75368 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002527 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.574792 B =11079.017408 C =11224.937370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.114 3.886 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.171 4.171 14 C -0.060 4.060 15 C 0.172 3.828 16 N -0.704 5.704 17 C 0.523 3.477 18 O -0.571 6.571 19 C -0.124 4.124 20 H 0.148 0.852 21 C -0.102 4.102 22 C -0.132 4.132 23 C 0.100 3.900 24 N -0.704 5.704 25 C 0.524 3.476 26 O -0.584 6.584 27 C -0.180 4.180 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.408 0.592 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -22.674 -13.485 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.064 3.936 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.190 4.190 14 C -0.061 4.061 15 C 0.048 3.952 16 N -0.355 5.355 17 C 0.309 3.691 18 O -0.451 6.451 19 C -0.148 4.148 20 H 0.165 0.835 21 C -0.140 4.140 22 C -0.169 4.169 23 C -0.023 4.023 24 N -0.355 5.355 25 C 0.309 3.691 26 O -0.465 6.465 27 C -0.200 4.200 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.245 0.755 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.674 -22.663 -12.621 26.078 hybrid contribution 0.512 1.472 -0.133 1.564 sum 3.187 -21.191 -12.754 24.937 Atomic orbital electron populations 1.70196 1.08037 1.28745 1.48873 1.26595 0.96854 1.02735 0.95845 0.84521 0.78270 0.74816 0.78546 1.17418 1.19355 1.19359 1.21871 0.92559 0.81353 1.53141 0.87987 1.83947 1.35901 1.12499 1.81338 1.19817 0.91585 0.87850 0.94366 1.21367 0.93068 1.00269 1.10574 1.21138 1.00416 0.91106 0.96124 1.20950 0.93268 0.98200 1.06533 1.19451 0.93954 0.92781 0.99877 1.20090 0.99912 0.92627 0.82523 1.46186 1.59168 1.21531 1.08625 1.20399 0.76911 0.80867 0.90897 1.90678 1.52708 1.48842 1.52882 1.21533 0.96770 1.04510 0.91956 0.83476 1.21544 1.01537 0.92435 0.98533 1.21954 0.96284 1.04644 0.94059 1.21779 0.89846 0.88066 1.02584 1.45385 1.22240 1.27582 1.40318 1.19675 0.88278 0.81299 0.79836 1.90789 1.50461 1.39801 1.65411 1.20204 0.99490 0.90012 1.10300 0.91829 0.85922 0.83427 0.84287 0.89961 0.91020 0.75132 0.91303 0.89527 0.86633 0.89939 0.90309 0.87263 0.75491 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.76 13.67 21.62 0.30 -56.47 16 2 C -0.02 -1.30 5.49 84.84 0.47 -0.84 16 3 Si 1.02 43.03 29.55 68.60 2.03 45.06 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.41 -24.15 9.49 67.92 0.64 -23.51 16 8 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -13.95 9.76 -22.70 -0.22 -14.17 16 10 C 0.11 5.75 6.65 22.58 0.15 5.90 16 11 C -0.23 -10.25 9.17 22.39 0.21 -10.04 16 12 C -0.07 -2.46 10.04 22.25 0.22 -2.24 16 13 C -0.17 -5.68 9.70 22.30 0.22 -5.47 16 14 C -0.06 -2.15 5.25 -19.88 -0.10 -2.25 16 15 C 0.17 5.37 5.80 85.63 0.50 5.86 16 16 N -0.70 -20.96 5.03 -466.78 -2.35 -23.30 16 17 C 0.52 14.60 7.06 87.66 0.62 15.22 16 18 O -0.57 -18.84 15.79 -3.01 -0.05 -18.89 16 19 C -0.12 -2.39 2.78 -12.43 -0.03 -2.43 16 20 H 0.15 2.32 8.14 -2.38 -0.02 2.30 16 21 C -0.10 -1.40 4.78 30.73 0.15 -1.25 16 22 C -0.13 -0.75 6.02 30.68 0.18 -0.57 16 23 C 0.10 0.52 7.17 86.49 0.62 1.14 16 24 N -0.70 -8.88 5.44 -467.49 -2.55 -11.43 16 25 C 0.52 10.84 7.27 87.73 0.64 11.48 16 26 O -0.58 -16.97 15.55 -3.01 -0.05 -17.02 16 27 C -0.18 -7.88 9.65 22.39 0.22 -7.66 16 28 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 29 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 30 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 32 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 33 H 0.07 2.29 8.08 -2.38 -0.02 2.27 16 34 H 0.41 12.58 7.12 -92.71 -0.66 11.92 16 35 H 0.07 1.15 7.72 -2.39 -0.02 1.13 16 36 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.08 0.41 8.12 -2.39 -0.02 0.39 16 39 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 40 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.41 4.47 8.80 -92.71 -0.82 3.66 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -79.83 354.39 1.40 -78.43 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.40 Total: 34.42 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.69 Total: -16.64 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -4.60 Total: -91.20 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.32 Total: -50.07 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -79.83 1.40 -78.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331525820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.595 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds