Wall clock time and date at job start Tue Mar 31 2020 12:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00226 * 2 1 4 4 H 1.48503 * 109.47435 * 179.97438 * 3 2 1 5 5 H 1.48512 * 109.46669 * 299.99255 * 3 2 1 6 6 H 1.48493 * 109.47333 * 59.99139 * 3 2 1 7 7 C 1.38659 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00519 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00091 * 185.05956 * 9 7 2 11 11 C 1.38894 * 120.06997 * 354.45967 * 10 9 7 12 12 C 1.38085 * 119.93245 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06548 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.14231 * 359.97438 * 13 12 11 15 15 C 1.50691 * 119.96580 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47414 * 89.99731 * 15 14 13 17 17 C 1.34780 * 119.99977 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99915 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.32762 * 60.21408 * 19 17 16 21 21 C 1.53068 * 109.40216 * 180.02562 * 19 17 16 22 22 C 1.53343 * 108.45710 * 169.04946 * 21 19 17 23 23 C 1.52927 * 108.66980 * 292.44720 * 22 21 19 24 24 N 1.45754 * 110.48706 * 50.75304 * 23 22 21 25 25 C 1.33353 * 124.10785 * 340.94600 * 24 23 22 26 26 O 1.21287 * 118.24554 * 182.22104 * 25 24 23 27 27 C 1.38120 * 120.06420 * 0.27724 * 14 13 12 28 28 H 0.97000 * 119.99993 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.03658 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.96487 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.92494 * 180.02562 * 13 12 11 32 32 H 1.09005 * 109.47571 * 329.99605 * 15 14 13 33 33 H 1.09006 * 109.47105 * 210.00375 * 15 14 13 34 34 H 0.97000 * 120.00153 * 0.02562 * 16 15 14 35 35 H 1.09001 * 109.67238 * 49.28692 * 21 19 17 36 36 H 1.09004 * 109.66940 * 288.79421 * 21 19 17 37 37 H 1.08998 * 109.60530 * 52.19985 * 22 21 19 38 38 H 1.08998 * 109.60528 * 172.53502 * 22 21 19 39 39 H 1.08994 * 109.30042 * 171.06717 * 23 22 21 40 40 H 1.08997 * 109.30007 * 290.64685 * 23 22 21 41 41 H 0.97004 * 117.94584 * 160.92168 * 24 23 22 42 42 H 1.08004 * 120.03243 * 179.70982 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2127 6 1 1.8908 2.3965 1.2123 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0953 12 6 4.2023 -4.5969 0.2050 13 6 3.5684 -5.8202 0.3268 14 6 2.1873 -5.8884 0.3396 15 6 1.5008 -7.2232 0.4730 16 7 1.2845 -7.5215 1.8908 17 6 0.6814 -8.6711 2.2532 18 8 0.3174 -9.4584 1.4055 19 6 0.4583 -8.9778 3.7118 20 1 -0.1693 -8.2027 4.1515 21 6 -0.2390 -10.3339 3.8454 22 6 -0.2092 -10.7518 5.3205 23 6 1.2390 -11.0398 5.7185 24 7 2.1038 -9.9313 5.3341 25 6 1.7809 -9.0117 4.4240 26 8 2.5989 -8.1573 4.1560 27 6 1.4365 -4.7348 0.2249 28 1 -0.4850 0.8400 -0.0004 29 1 3.9528 -2.4847 -0.0002 30 1 5.2811 -4.5469 0.1950 31 1 4.1534 -6.7240 0.4129 32 1 2.1252 -7.9989 0.0297 33 1 0.5408 -7.1911 -0.0423 34 1 1.5745 -6.8914 2.5688 35 1 0.2841 -11.0764 3.2428 36 1 -1.2723 -10.2499 3.5086 37 1 -0.6043 -9.9447 5.9373 38 1 -0.8141 -11.6479 5.4590 39 1 1.2945 -11.1826 6.7976 40 1 1.5768 -11.9469 5.2173 41 1 2.9684 -9.8577 5.7678 42 1 0.3579 -4.7891 0.2302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331525821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:05 Heat of formation + Delta-G solvation = -81.785321 kcal Electronic energy + Delta-G solvation = -25801.563940 eV Core-core repulsion = 21939.838737 eV Total energy + Delta-G solvation = -3861.725203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10108 -39.29921 -38.77298 -36.95242 -36.65323 -34.39988 -33.40329 -32.29231 -30.94202 -30.08016 -29.04459 -26.35235 -25.33405 -24.49333 -23.11252 -21.65776 -21.01487 -20.68889 -19.43576 -18.05246 -17.60536 -17.24978 -16.90183 -16.67266 -15.80171 -15.27557 -15.22874 -14.92184 -14.58102 -14.51078 -14.37531 -14.00842 -13.90176 -13.66948 -13.54242 -13.29418 -12.64606 -12.40498 -12.29535 -12.04869 -11.83676 -11.72100 -11.62743 -11.40048 -11.34171 -10.92124 -10.75150 -10.63147 -10.43040 -10.12864 -9.90571 -9.46252 -9.35611 -8.88380 -8.85377 -8.17363 -7.26403 -6.45500 -4.04642 1.95163 2.19925 2.34477 2.53041 3.00485 3.11798 3.13645 3.19203 3.40183 3.95981 4.13222 4.25843 4.31445 4.36995 4.58117 4.83910 4.89761 4.92810 5.00493 5.11829 5.16858 5.30857 5.34051 5.40932 5.59011 5.60331 5.80462 5.84622 5.90860 5.97086 6.14202 6.31436 6.37933 6.56158 6.61993 6.88151 6.88425 7.05338 7.25688 7.33918 7.40628 7.63444 7.78056 7.84967 7.99235 8.26100 9.00259 9.69867 10.72604 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020839 B = 0.002528 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.285034 B =11073.436691 C =11218.645280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.189 4.189 14 C -0.072 4.072 15 C 0.167 3.833 16 N -0.701 5.701 17 C 0.527 3.473 18 O -0.544 6.544 19 C -0.128 4.128 20 H 0.131 0.869 21 C -0.105 4.105 22 C -0.139 4.139 23 C 0.108 3.892 24 N -0.717 5.717 25 C 0.527 3.473 26 O -0.536 6.536 27 C -0.171 4.171 28 H 0.269 0.731 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -20.471 11.900 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.097 3.903 11 C -0.244 4.244 12 C -0.095 4.095 13 C -0.208 4.208 14 C -0.073 4.073 15 C 0.044 3.956 16 N -0.353 5.353 17 C 0.311 3.689 18 O -0.422 6.422 19 C -0.152 4.152 20 H 0.149 0.851 21 C -0.143 4.143 22 C -0.176 4.176 23 C -0.017 4.017 24 N -0.370 5.370 25 C 0.313 3.687 26 O -0.413 6.413 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.239 0.761 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.004 -20.366 10.997 23.167 hybrid contribution 0.979 1.184 0.606 1.652 sum 1.984 -19.182 11.603 22.506 Atomic orbital electron populations 1.70046 1.05952 1.27556 1.46196 1.25287 0.95842 0.98822 0.96567 0.85648 0.79144 0.80387 0.78249 1.19103 1.20139 1.20147 1.21370 0.91818 0.80791 1.52801 0.89024 1.83980 1.34246 1.11384 1.78543 1.19307 0.90254 0.88041 0.92724 1.21240 0.93849 0.99062 1.10273 1.20743 0.98571 0.92245 0.97926 1.20485 0.93379 0.97172 1.09788 1.19243 0.93540 0.92835 1.01643 1.20178 1.00054 0.93887 0.81444 1.46174 1.58827 1.21009 1.09251 1.19746 0.78088 0.81827 0.89254 1.90698 1.51536 1.48053 1.51931 1.21501 0.96320 1.02458 0.94904 0.85108 1.21512 1.02201 0.94398 0.96160 1.21932 0.95677 1.03333 0.96706 1.21453 0.90634 0.89051 1.00536 1.45363 1.21563 1.28117 1.41944 1.19631 0.88583 0.81146 0.79366 1.90821 1.49588 1.37457 1.63433 1.20067 0.99369 0.89809 1.09866 0.92072 0.85470 0.87294 0.87528 0.91033 0.90755 0.75026 0.89873 0.89645 0.90667 0.89134 0.90264 0.91375 0.76126 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 10 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.40 9.70 -39.54 -0.38 -3.78 16 14 C -0.07 -1.32 5.25 -104.65 -0.55 -1.87 16 15 C 0.17 2.68 5.80 -5.20 -0.03 2.65 16 16 N -0.70 -10.61 5.04 -61.47 -0.31 -10.92 16 17 C 0.53 7.50 7.07 -10.98 -0.08 7.43 16 18 O -0.54 -9.09 15.80 5.56 0.09 -9.00 16 19 C -0.13 -1.31 2.78 -93.10 -0.26 -1.57 16 20 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.10 -0.81 4.78 -26.52 -0.13 -0.94 16 22 C -0.14 -0.63 6.02 -26.59 -0.16 -0.79 16 23 C 0.11 0.47 7.17 -4.48 -0.03 0.44 16 24 N -0.72 -5.37 5.45 -61.36 -0.33 -5.71 16 25 C 0.53 5.83 7.28 -11.83 -0.09 5.74 16 26 O -0.54 -7.98 15.54 5.55 0.09 -7.89 16 27 C -0.17 -3.63 9.64 -39.39 -0.38 -4.01 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.41 6.36 7.10 -40.82 -0.29 6.07 16 35 H 0.08 0.76 7.73 -51.93 -0.40 0.35 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.40 2.65 8.80 -40.82 -0.36 2.29 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -34.39 354.40 -7.70 -42.08 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.40 Total: 10.33 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.91 Total: -10.13 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.11 Total: -41.20 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.39 -7.70 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331525821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.703 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds