Wall clock time and date at job start Tue Mar 31 2020 13:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46962 * 2 1 4 4 C 1.50698 * 110.53748 * 303.53711 * 3 2 1 5 5 O 1.21296 * 120.00401 * 245.36782 * 4 3 2 6 6 N 1.34777 * 120.00129 * 65.36915 * 4 3 2 7 7 C 1.39990 * 120.00324 * 183.91836 * 6 4 3 8 8 C 1.38924 * 120.00696 * 211.29542 * 7 6 4 9 9 C 1.37998 * 119.99976 * 179.71683 * 8 7 6 10 10 C 1.38904 * 119.99938 * 0.53487 * 9 8 7 11 11 O 1.35786 * 119.99517 * 179.74052 * 10 9 8 12 12 C 1.34813 * 116.99961 * 185.57693 * 11 10 9 13 13 H 1.08002 * 120.00062 * 5.41065 * 12 11 10 14 14 C 1.38632 * 120.00092 * 185.40806 * 12 11 10 15 15 N 1.31574 * 119.99875 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47344 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47477 * 120.00354 * 16 14 12 19 19 H 1.48509 * 109.47119 * 240.00002 * 16 14 12 20 20 C 1.38902 * 120.00951 * 359.75924 * 10 9 8 21 21 C 1.38009 * 119.99903 * 359.96361 * 20 10 9 22 22 C 1.54630 * 110.48413 * 180.92822 * 3 2 1 23 23 C 1.54482 * 101.79794 * 216.54025 * 22 3 2 24 24 N 1.46768 * 105.47339 * 25.39557 * 23 22 3 25 25 C 1.34422 * 111.29766 * 342.98625 * 24 23 22 26 26 O 1.21285 * 124.93728 * 180.41746 * 25 24 23 27 27 H 1.08996 * 109.47613 * 64.81726 * 1 2 3 28 28 H 1.09000 * 109.47353 * 184.82026 * 1 2 3 29 29 H 1.09004 * 109.47136 * 304.82081 * 1 2 3 30 30 H 1.08997 * 109.47234 * 240.00148 * 2 1 3 31 31 H 1.08996 * 109.47169 * 119.99814 * 2 1 3 32 32 H 0.96996 * 119.99809 * 3.92397 * 6 4 3 33 33 H 1.08004 * 119.99075 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.99581 * 180.29182 * 9 8 7 35 35 H 0.96995 * 120.00207 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.00443 * 179.97438 * 20 10 9 37 37 H 1.07999 * 119.99981 * 180.02562 * 21 20 10 38 38 H 1.09004 * 110.96969 * 98.40407 * 22 3 2 39 39 H 1.08999 * 110.97167 * 334.67923 * 22 3 2 40 40 H 1.09001 * 110.24820 * 144.39518 * 23 22 3 41 41 H 1.09001 * 110.24848 * 266.31231 * 23 22 3 42 42 H 0.96998 * 124.34946 * 162.96044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4811 2.2009 -1.1763 5 8 2.2232 2.5991 -2.0492 6 7 0.1566 2.4367 -1.2584 7 6 -0.3731 3.0685 -2.3897 8 6 -1.4957 3.8783 -2.2715 9 6 -2.0143 4.5058 -3.3858 10 6 -1.4204 4.3188 -4.6275 11 8 -1.9340 4.9321 -5.7248 12 6 -1.3834 4.6189 -6.9149 13 1 -0.6319 3.8455 -6.9754 14 6 -1.7818 5.2895 -8.0609 15 7 -2.6970 6.2319 -7.9871 16 14 -1.0195 4.8550 -9.7099 17 1 -0.0225 3.7703 -9.5240 18 1 -2.0817 4.3974 -10.6412 19 1 -0.3476 6.0525 -10.2756 20 6 -0.3017 3.5043 -4.7470 21 6 0.2205 2.8813 -3.6317 22 6 3.5858 1.4700 -0.0235 23 6 3.8939 2.6855 0.8788 24 7 2.7340 2.8166 1.7685 25 6 1.6768 2.1337 1.2964 26 8 0.5899 2.0789 1.8318 27 1 -0.3634 0.4372 -0.9299 28 1 -0.3634 -1.0240 0.0864 29 1 -0.3634 0.5868 0.8437 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -0.4295 2.1687 -0.5335 33 1 -1.9600 4.0200 -1.3067 34 1 -2.8842 5.1391 -3.2930 35 1 -2.9760 6.7009 -8.7889 36 1 0.1597 3.3587 -5.7125 37 1 1.0907 2.2483 -3.7245 38 1 3.9578 1.6311 -1.0353 39 1 3.9987 0.5547 0.4006 40 1 4.7972 2.5037 1.4611 41 1 4.0103 3.5846 0.2738 42 1 2.7308 3.3299 2.5916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331846972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:35 Heat of formation + Delta-G solvation = -60.293825 kcal Electronic energy + Delta-G solvation = -26736.243550 eV Core-core repulsion = 22875.450288 eV Total energy + Delta-G solvation = -3860.793262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70916 -39.58564 -38.53402 -36.93568 -36.25904 -34.96851 -33.66159 -32.15587 -30.29443 -30.17697 -28.38341 -27.45875 -25.31752 -23.29234 -23.21357 -22.21897 -21.86281 -20.76376 -19.57904 -18.13145 -17.82155 -17.59470 -17.17716 -16.43462 -15.82589 -15.38832 -14.82225 -14.50233 -14.43724 -14.13204 -14.10091 -13.93840 -13.62159 -13.56330 -13.43955 -13.30039 -12.88502 -12.71528 -12.54372 -12.02267 -11.85967 -11.69954 -11.57420 -11.52908 -11.35644 -11.13676 -11.00496 -10.73553 -10.41477 -10.04082 -9.74717 -9.56350 -9.48157 -9.23565 -8.68554 -8.20485 -6.91245 -6.44057 -4.01418 1.94137 2.13943 2.20402 2.72358 2.98900 3.14762 3.15762 3.21292 3.25349 3.84435 3.98326 4.04912 4.29644 4.56680 4.64436 4.67600 4.86421 5.05243 5.11537 5.16357 5.20314 5.26276 5.45596 5.55226 5.66936 5.69139 5.70598 5.74919 5.87663 6.12781 6.15393 6.17943 6.31614 6.34946 6.61442 6.72784 6.84615 7.00128 7.08648 7.28913 7.43858 7.64433 7.77136 7.84084 8.01053 8.26283 9.01818 9.71556 10.74019 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.002911 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.612026 B = 9616.900613 C = 9965.778426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 C -0.117 4.117 4 C 0.527 3.473 5 O -0.517 6.517 6 N -0.650 5.650 7 C 0.032 3.968 8 C -0.092 4.092 9 C -0.176 4.176 10 C 0.146 3.854 11 O -0.177 6.177 12 C -0.390 4.390 13 H 0.093 0.907 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.219 4.219 21 C -0.065 4.065 22 C -0.119 4.119 23 C 0.098 3.902 24 N -0.726 5.726 25 C 0.533 3.467 26 O -0.518 6.518 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.269 0.731 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 -11.055 18.017 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.132 4.132 3 C -0.124 4.124 4 C 0.312 3.688 5 O -0.392 6.392 6 N -0.297 5.297 7 C -0.060 4.060 8 C -0.113 4.113 9 C -0.196 4.196 10 C 0.092 3.908 11 O -0.080 6.080 12 C -0.466 4.466 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.238 4.238 21 C -0.085 4.085 22 C -0.157 4.157 23 C -0.027 4.027 24 N -0.382 5.382 25 C 0.317 3.683 26 O -0.394 6.394 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.742 -10.550 17.388 23.485 hybrid contribution 0.276 -0.045 -0.053 0.285 sum 12.018 -10.594 17.336 23.605 Atomic orbital electron populations 1.22410 0.94725 1.03346 1.04402 1.21355 0.97485 0.90972 1.03398 1.21716 0.98737 0.98434 0.93462 1.19614 0.82438 0.80007 0.86736 1.90708 1.58031 1.50348 1.40150 1.43664 1.07617 1.57959 1.20461 1.17304 0.99423 1.03247 0.86063 1.20364 0.96469 0.96610 0.97821 1.19985 1.03355 1.06035 0.90206 1.19415 0.91300 0.91711 0.88347 1.83993 1.53448 1.58015 1.12527 1.21379 1.23373 1.20325 0.81510 0.88993 1.25291 0.96577 0.95507 0.99189 1.70054 1.28034 1.21923 1.29717 0.85646 0.78801 0.78624 0.80374 1.19040 1.20149 1.20149 1.21092 0.99516 1.04000 0.99236 1.20759 0.98877 0.98609 0.90256 1.22723 0.91385 0.98431 1.03166 1.22177 0.88552 0.99553 0.92393 1.46149 1.13457 1.52057 1.26491 1.20373 0.83928 0.78575 0.85412 1.90706 1.22914 1.62276 1.63469 0.91256 0.91889 0.89586 0.90223 0.90518 0.75056 0.86710 0.85989 0.92075 0.85141 0.85862 0.86891 0.89086 0.89693 0.90269 0.74760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.30 37.16 0.31 -1.61 16 2 C -0.09 -0.84 4.95 -26.73 -0.13 -0.97 16 3 C -0.12 -1.22 0.57 -155.64 -0.09 -1.31 16 4 C 0.53 7.61 6.14 -10.99 -0.07 7.54 16 5 O -0.52 -8.89 12.96 5.54 0.07 -8.82 16 6 N -0.65 -9.85 3.76 -9.82 -0.04 -9.88 16 7 C 0.03 0.59 6.32 -83.62 -0.53 0.06 16 8 C -0.09 -1.70 9.95 -39.42 -0.39 -2.09 16 9 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16 10 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 11 O -0.18 -5.07 9.76 -0.02 0.00 -5.07 16 12 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 13 H 0.09 2.41 5.28 -52.49 -0.28 2.14 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 16 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.22 -4.95 9.13 -39.42 -0.36 -5.31 16 21 C -0.07 -1.32 8.66 -39.41 -0.34 -1.66 16 22 C -0.12 -0.92 6.08 -25.10 -0.15 -1.07 16 23 C 0.10 0.66 7.78 -3.12 -0.02 0.63 16 24 N -0.73 -5.99 6.24 -59.17 -0.37 -6.36 16 25 C 0.53 5.91 6.92 -10.83 -0.07 5.84 16 26 O -0.52 -6.99 14.85 5.55 0.08 -6.91 16 27 H 0.07 0.79 5.67 -51.93 -0.29 0.50 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.96 5.19 -51.93 -0.27 0.69 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.41 5.57 5.66 -40.82 -0.23 5.33 16 33 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.13 2.96 5.70 -52.49 -0.30 2.66 16 37 H 0.12 2.40 6.23 -52.49 -0.33 2.08 16 38 H 0.11 1.01 6.88 -51.93 -0.36 0.65 16 39 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.41 2.65 8.96 -40.82 -0.37 2.29 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -33.73 341.11 -6.62 -40.35 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.93 Total: 11.00 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.31 Total: -10.49 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.35 Total: -40.88 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.15 Total: -20.79 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.73 -6.62 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331846972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds