Wall clock time and date at job start Tue Mar 31 2020 13:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46962 * 2 1 4 4 C 1.50698 * 110.53748 * 303.53711 * 3 2 1 5 5 O 1.21296 * 120.00401 * 245.36782 * 4 3 2 6 6 N 1.34777 * 120.00129 * 65.36915 * 4 3 2 7 7 C 1.39990 * 120.00324 * 183.91836 * 6 4 3 8 8 C 1.38924 * 120.00696 * 211.29542 * 7 6 4 9 9 C 1.37998 * 119.99976 * 179.71683 * 8 7 6 10 10 C 1.38904 * 119.99938 * 0.53487 * 9 8 7 11 11 O 1.35786 * 119.99517 * 179.74052 * 10 9 8 12 12 C 1.34813 * 116.99961 * 185.57693 * 11 10 9 13 13 H 1.08002 * 120.00062 * 5.41065 * 12 11 10 14 14 C 1.38632 * 120.00092 * 185.40806 * 12 11 10 15 15 N 1.31574 * 119.99875 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47344 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47477 * 120.00354 * 16 14 12 19 19 H 1.48509 * 109.47119 * 240.00002 * 16 14 12 20 20 C 1.38902 * 120.00951 * 359.75924 * 10 9 8 21 21 C 1.38009 * 119.99903 * 359.96361 * 20 10 9 22 22 C 1.54630 * 110.48413 * 180.92822 * 3 2 1 23 23 C 1.54482 * 101.79794 * 216.54025 * 22 3 2 24 24 N 1.46768 * 105.47339 * 25.39557 * 23 22 3 25 25 C 1.34422 * 111.29766 * 342.98625 * 24 23 22 26 26 O 1.21285 * 124.93728 * 180.41746 * 25 24 23 27 27 H 1.08996 * 109.47613 * 64.81726 * 1 2 3 28 28 H 1.09000 * 109.47353 * 184.82026 * 1 2 3 29 29 H 1.09004 * 109.47136 * 304.82081 * 1 2 3 30 30 H 1.08997 * 109.47234 * 240.00148 * 2 1 3 31 31 H 1.08996 * 109.47169 * 119.99814 * 2 1 3 32 32 H 0.96996 * 119.99809 * 3.92397 * 6 4 3 33 33 H 1.08004 * 119.99075 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.99581 * 180.29182 * 9 8 7 35 35 H 0.96995 * 120.00207 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.00443 * 179.97438 * 20 10 9 37 37 H 1.07999 * 119.99981 * 180.02562 * 21 20 10 38 38 H 1.09004 * 110.96969 * 98.40407 * 22 3 2 39 39 H 1.08999 * 110.97167 * 334.67923 * 22 3 2 40 40 H 1.09001 * 110.24820 * 144.39518 * 23 22 3 41 41 H 1.09001 * 110.24848 * 266.31231 * 23 22 3 42 42 H 0.96998 * 124.34946 * 162.96044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4811 2.2009 -1.1763 5 8 2.2232 2.5991 -2.0492 6 7 0.1566 2.4367 -1.2584 7 6 -0.3731 3.0685 -2.3897 8 6 -1.4957 3.8783 -2.2715 9 6 -2.0143 4.5058 -3.3858 10 6 -1.4204 4.3188 -4.6275 11 8 -1.9340 4.9321 -5.7248 12 6 -1.3834 4.6189 -6.9149 13 1 -0.6319 3.8455 -6.9754 14 6 -1.7818 5.2895 -8.0609 15 7 -2.6970 6.2319 -7.9871 16 14 -1.0195 4.8550 -9.7099 17 1 -0.0225 3.7703 -9.5240 18 1 -2.0817 4.3974 -10.6412 19 1 -0.3476 6.0525 -10.2756 20 6 -0.3017 3.5043 -4.7470 21 6 0.2205 2.8813 -3.6317 22 6 3.5858 1.4700 -0.0235 23 6 3.8939 2.6855 0.8788 24 7 2.7340 2.8166 1.7685 25 6 1.6768 2.1337 1.2964 26 8 0.5899 2.0789 1.8318 27 1 -0.3634 0.4372 -0.9299 28 1 -0.3634 -1.0240 0.0864 29 1 -0.3634 0.5868 0.8437 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -0.4295 2.1687 -0.5335 33 1 -1.9600 4.0200 -1.3067 34 1 -2.8842 5.1391 -3.2930 35 1 -2.9760 6.7009 -8.7889 36 1 0.1597 3.3587 -5.7125 37 1 1.0907 2.2483 -3.7245 38 1 3.9578 1.6311 -1.0353 39 1 3.9987 0.5547 0.4006 40 1 4.7972 2.5037 1.4611 41 1 4.0103 3.5846 0.2738 42 1 2.7308 3.3299 2.5916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331846972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:34 Heat of formation + Delta-G solvation = -84.645542 kcal Electronic energy + Delta-G solvation = -26737.299519 eV Core-core repulsion = 22875.450288 eV Total energy + Delta-G solvation = -3861.849232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.66833 -41.00815 -40.05230 -38.31064 -37.36792 -36.01982 -34.92699 -34.11600 -31.91484 -30.97471 -29.80592 -28.43698 -27.29342 -24.52104 -24.07166 -23.70198 -22.74379 -22.17842 -20.75292 -19.86938 -19.13584 -18.58491 -18.43545 -17.97495 -16.88307 -16.61664 -16.25925 -15.94104 -15.58766 -15.50689 -15.40842 -15.11785 -14.91296 -14.77140 -14.63458 -14.37969 -14.18380 -14.02889 -13.59180 -13.37486 -13.31343 -13.26846 -12.75999 -12.74606 -12.51077 -12.32541 -12.18605 -12.10213 -11.83879 -11.37299 -11.25000 -10.96443 -10.69240 -10.49967 -10.15661 -9.88762 -8.63466 -8.47733 -6.14469 0.42469 0.49870 1.16035 1.35667 1.41373 1.53768 1.54006 2.04118 2.17921 2.32053 2.79145 3.08575 3.14284 3.31086 3.46491 3.51232 3.75502 4.00932 4.06423 4.07043 4.29377 4.35220 4.44339 4.45469 4.57416 4.68363 4.71729 4.79378 4.98731 5.01181 5.03826 5.05307 5.08732 5.14483 5.29191 5.36924 5.38319 5.52916 5.66371 5.67521 5.92085 6.00702 6.08475 6.36073 6.96614 7.00537 7.10303 7.75784 8.75466 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.002911 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.612026 B = 9616.900613 C = 9965.778426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.113 4.113 4 C 0.526 3.474 5 O -0.544 6.544 6 N -0.648 5.648 7 C 0.057 3.943 8 C -0.085 4.085 9 C -0.177 4.177 10 C 0.109 3.891 11 O -0.226 6.226 12 C -0.413 4.413 13 H 0.100 0.900 14 C -0.021 4.021 15 N -0.918 5.918 16 Si 1.018 2.982 17 H -0.253 1.253 18 H -0.266 1.266 19 H -0.268 1.268 20 C -0.223 4.223 21 C -0.071 4.071 22 C -0.116 4.116 23 C 0.095 3.905 24 N -0.715 5.715 25 C 0.525 3.475 26 O -0.547 6.547 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.421 0.579 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.273 0.727 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.385 -13.041 20.247 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.131 4.131 3 C -0.119 4.119 4 C 0.313 3.687 5 O -0.421 6.421 6 N -0.296 5.296 7 C -0.036 4.036 8 C -0.105 4.105 9 C -0.197 4.197 10 C 0.058 3.942 11 O -0.133 6.133 12 C -0.489 4.489 13 H 0.117 0.883 14 C -0.219 4.219 15 N -0.556 5.556 16 Si 0.837 3.163 17 H -0.176 1.176 18 H -0.191 1.191 19 H -0.193 1.193 20 C -0.243 4.243 21 C -0.091 4.091 22 C -0.154 4.154 23 C -0.028 4.028 24 N -0.370 5.370 25 C 0.310 3.690 26 O -0.425 6.425 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.262 0.738 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.086 0.914 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 14.094 -12.564 19.702 27.288 hybrid contribution -0.327 0.456 -0.378 0.676 sum 13.768 -12.108 19.324 26.638 Atomic orbital electron populations 1.22376 0.95710 1.03900 1.02865 1.21440 0.96615 0.90079 1.04970 1.21761 1.00542 0.98491 0.91134 1.20389 0.81657 0.79147 0.87508 1.90704 1.58567 1.51210 1.41639 1.43749 1.08480 1.57774 1.19621 1.17469 0.98281 1.01190 0.86653 1.20706 0.96088 0.95202 0.98476 1.20258 1.03404 1.06085 0.89917 1.19891 0.92740 0.92933 0.88646 1.83955 1.55500 1.60327 1.13496 1.21829 1.23808 1.21076 0.82190 0.88316 1.26562 0.96940 0.95179 1.03202 1.70187 1.30404 1.23954 1.31099 0.84541 0.78196 0.78827 0.74723 1.17650 1.19135 1.19312 1.21111 0.99236 1.04114 0.99809 1.20844 0.99284 0.98718 0.90288 1.22828 0.89048 1.00436 1.03100 1.22352 0.89299 0.98715 0.92466 1.46179 1.13177 1.50910 1.26733 1.20492 0.84046 0.78935 0.85552 1.90697 1.24082 1.63424 1.64281 0.93050 0.90475 0.90566 0.89422 0.88087 0.73770 0.82819 0.85390 0.91772 0.86028 0.85032 0.88096 0.85738 0.85849 0.91424 0.73650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 8.30 71.98 0.60 -2.79 16 2 C -0.09 -1.36 4.95 30.59 0.15 -1.21 16 3 C -0.11 -2.03 0.57 -52.92 -0.03 -2.06 16 4 C 0.53 14.15 6.14 87.66 0.54 14.69 16 5 O -0.54 -17.95 12.96 -3.08 -0.04 -17.99 16 6 N -0.65 -18.40 3.76 -303.37 -1.14 -19.54 16 7 C 0.06 2.04 6.32 38.17 0.24 2.29 16 8 C -0.08 -2.99 9.95 22.38 0.22 -2.77 16 9 C -0.18 -7.61 9.98 22.37 0.22 -7.39 16 10 C 0.11 5.55 6.65 22.59 0.15 5.70 16 11 O -0.23 -13.77 9.76 -22.98 -0.22 -14.00 16 12 C -0.41 -24.44 9.44 67.91 0.64 -23.80 16 13 H 0.10 5.43 5.28 -2.91 -0.02 5.42 16 14 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 15 N -0.92 -56.67 13.67 21.61 0.30 -56.38 16 16 Si 1.02 43.48 29.55 68.60 2.03 45.51 16 17 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 C -0.22 -10.41 9.13 22.37 0.20 -10.21 16 21 C -0.07 -2.87 8.66 22.38 0.19 -2.68 16 22 C -0.12 -1.38 6.08 31.65 0.19 -1.19 16 23 C 0.10 0.94 7.78 86.83 0.68 1.62 16 24 N -0.72 -9.51 6.24 -459.72 -2.87 -12.37 16 25 C 0.53 10.20 6.92 87.91 0.61 10.81 16 26 O -0.55 -13.56 14.85 -3.05 -0.05 -13.60 16 27 H 0.05 1.08 5.67 -2.39 -0.01 1.06 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.54 5.19 -2.38 -0.01 1.52 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.42 10.53 5.66 -92.71 -0.52 10.00 16 33 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.12 5.79 5.70 -2.91 -0.02 5.77 16 37 H 0.13 5.07 6.23 -2.91 -0.02 5.06 16 38 H 0.10 1.53 6.88 -2.38 -0.02 1.51 16 39 H 0.12 0.68 7.91 -2.39 -0.02 0.66 16 40 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.42 4.14 8.96 -92.71 -0.83 3.30 16 Total: -1.00 -77.89 341.11 2.82 -75.07 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.26 Total: 33.04 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 5.08 Total: -19.74 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.72 Total: -88.29 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.31 Total: -45.59 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.89 2.82 -75.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331846972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.575 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds