Wall clock time and date at job start Tue Mar 31 2020 13:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46713 * 2 1 4 4 C 1.50693 * 110.43422 * 64.90936 * 3 2 1 5 5 O 1.21291 * 120.00554 * 113.75708 * 4 3 2 6 6 N 1.34780 * 119.99674 * 293.75009 * 4 3 2 7 7 C 1.39998 * 119.99732 * 184.47552 * 6 4 3 8 8 C 1.38918 * 120.00126 * 322.95354 * 7 6 4 9 9 C 1.38003 * 120.00060 * 179.72620 * 8 7 6 10 10 C 1.38903 * 119.99877 * 0.25650 * 9 8 7 11 11 O 1.35784 * 119.99896 * 179.97438 * 10 9 8 12 12 C 1.34811 * 117.00001 * 354.48924 * 11 10 9 13 13 H 1.08002 * 119.99657 * 5.06257 * 12 11 10 14 14 C 1.38626 * 120.00185 * 185.06109 * 12 11 10 15 15 N 1.31574 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00007 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47145 * 60.00178 * 16 14 12 18 18 H 1.48508 * 109.46872 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47109 * 299.99838 * 16 14 12 20 20 C 1.38908 * 120.00451 * 359.97438 * 10 9 8 21 21 C 1.38005 * 120.00246 * 0.02562 * 20 10 9 22 22 C 1.54627 * 110.48223 * 187.44746 * 3 2 1 23 23 C 1.54475 * 101.76691 * 94.01466 * 22 3 2 24 24 N 1.46767 * 105.47286 * 25.41263 * 23 22 3 25 25 C 1.34416 * 111.29966 * 342.98622 * 24 23 22 26 26 O 1.21284 * 124.94024 * 180.44689 * 25 24 23 27 27 H 1.09009 * 109.47074 * 52.07879 * 1 2 3 28 28 H 1.09000 * 109.47128 * 172.06824 * 1 2 3 29 29 H 1.08990 * 109.47615 * 292.07023 * 1 2 3 30 30 H 1.09003 * 109.47191 * 240.00350 * 2 1 3 31 31 H 1.08996 * 109.47039 * 119.99917 * 2 1 3 32 32 H 0.97000 * 120.00297 * 4.47080 * 6 4 3 33 33 H 1.08006 * 120.00110 * 359.97438 * 8 7 6 34 34 H 1.07994 * 120.00106 * 180.22896 * 9 8 7 35 35 H 0.97001 * 119.99932 * 179.97438 * 15 14 12 36 36 H 1.08005 * 120.00132 * 179.97438 * 20 10 9 37 37 H 1.07999 * 120.00218 * 180.02562 * 21 20 10 38 38 H 1.09005 * 110.96768 * 212.13548 * 22 3 2 39 39 H 1.09000 * 110.97194 * 335.89186 * 22 3 2 40 40 H 1.09001 * 110.24830 * 144.41564 * 23 22 3 41 41 H 1.09004 * 110.24789 * 266.41438 * 23 22 3 42 42 H 0.97000 * 124.34862 * 162.98912 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6507 2.1382 1.2789 5 8 2.5061 2.4810 2.0675 6 7 0.3519 2.3795 1.5463 7 6 -0.0041 3.1079 2.6876 8 6 0.7110 2.9439 3.8673 9 6 0.3636 3.6661 4.9908 10 6 -0.7043 4.5530 4.9436 11 8 -1.0464 5.2632 6.0492 12 6 -0.3847 4.9783 7.1886 13 1 0.4337 4.2737 7.1760 14 6 -0.7547 5.5898 8.3765 15 7 -1.7521 6.4478 8.3919 16 14 0.1627 5.1955 9.9552 17 1 1.5951 5.5542 9.7981 18 1 -0.4231 5.9743 11.0758 19 1 0.0449 3.7442 10.2469 20 6 -1.4224 4.7135 3.7654 21 6 -1.0751 3.9914 2.6418 22 6 3.5744 1.4740 -0.1878 23 6 3.7011 1.6514 -1.7171 24 7 2.4561 2.3033 -2.1401 25 6 1.5042 2.1965 -1.1971 26 8 0.3792 2.6394 -1.2925 27 1 -0.3634 0.6316 -0.8107 28 1 -0.3633 -1.0178 -0.1418 29 1 -0.3634 0.3861 0.9522 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -0.3361 2.0486 0.9480 33 1 1.5413 2.2542 3.9041 34 1 0.9218 3.5414 5.9069 35 1 -2.0112 6.8754 9.2231 36 1 -2.2530 5.4029 3.7288 37 1 -1.6331 4.1165 1.7256 38 1 4.0148 2.3195 0.3408 39 1 4.0263 0.5361 0.1350 40 1 4.5572 2.2832 -1.9539 41 1 3.8023 0.6805 -2.2023 42 1 2.3357 2.7534 -2.9909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331846973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:41 Heat of formation + Delta-G solvation = -62.139192 kcal Electronic energy + Delta-G solvation = -26656.863794 eV Core-core repulsion = 22795.990511 eV Total energy + Delta-G solvation = -3860.873283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66595 -39.54581 -38.49015 -36.93817 -36.29900 -34.84688 -33.54742 -32.11618 -30.46204 -30.14297 -28.38689 -27.42219 -25.27041 -23.45670 -23.02989 -22.15328 -22.01389 -20.72622 -19.57112 -18.05909 -17.79710 -17.29444 -16.85119 -16.53854 -16.32249 -15.18388 -14.82397 -14.62493 -14.48116 -14.30718 -14.13091 -13.74361 -13.59228 -13.54966 -13.39067 -13.25921 -12.82889 -12.65531 -12.55383 -12.09762 -11.97897 -11.70472 -11.55834 -11.43493 -11.37255 -11.13603 -10.96128 -10.70851 -10.42007 -10.11339 -9.67769 -9.60359 -9.50264 -9.13464 -8.65084 -8.15086 -6.89272 -6.40661 -3.98329 2.01829 2.18548 2.26255 2.72381 3.02519 3.17052 3.18794 3.20655 3.29851 3.81900 4.01002 4.04143 4.31992 4.50539 4.61520 4.66898 4.83939 4.93013 4.99937 5.12910 5.15322 5.31406 5.32232 5.50119 5.57686 5.68715 5.74408 5.76616 5.79851 5.97123 6.19746 6.25578 6.33436 6.38981 6.56605 6.79258 6.90926 7.07441 7.13778 7.33850 7.48181 7.72125 7.81613 7.86302 8.04485 8.36717 9.04978 9.75057 10.77321 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.002836 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.149356 B = 9870.465077 C =10267.899121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.097 4.097 3 C -0.117 4.117 4 C 0.527 3.473 5 O -0.522 6.522 6 N -0.647 5.647 7 C 0.030 3.970 8 C -0.062 4.062 9 C -0.222 4.222 10 C 0.148 3.852 11 O -0.177 6.177 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.178 4.178 21 C -0.089 4.089 22 C -0.116 4.116 23 C 0.100 3.900 24 N -0.728 5.728 25 C 0.534 3.466 26 O -0.515 6.515 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.410 0.590 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.270 0.730 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 -13.885 -20.601 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.135 4.135 3 C -0.124 4.124 4 C 0.311 3.689 5 O -0.398 6.398 6 N -0.294 5.294 7 C -0.062 4.062 8 C -0.082 4.082 9 C -0.242 4.242 10 C 0.094 3.906 11 O -0.080 6.080 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.198 4.198 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.025 4.025 24 N -0.384 5.384 25 C 0.318 3.682 26 O -0.390 6.390 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.272 -13.123 -19.787 25.490 hybrid contribution 0.238 -0.161 0.014 0.288 sum 9.510 -13.284 -19.774 25.650 Atomic orbital electron populations 1.22227 0.94771 1.03188 1.03706 1.21403 0.97139 0.91113 1.03877 1.21750 0.98851 0.98246 0.93574 1.19680 0.82968 0.79538 0.86676 1.90714 1.49556 1.51338 1.48178 1.43592 1.07448 1.53335 1.25012 1.17306 1.01500 1.00800 0.86570 1.20782 0.98404 0.98569 0.90455 1.21082 1.01215 1.02401 0.99457 1.19406 0.92300 0.90329 0.88576 1.83976 1.56817 1.52373 1.14848 1.21288 1.14860 1.27071 0.83478 0.89087 1.25276 0.96678 0.95967 0.98582 1.70040 1.25956 1.25911 1.27976 0.85787 0.79191 0.78766 0.79733 1.19480 1.20314 1.19495 1.20004 1.03216 1.05117 0.91454 1.20427 0.97454 0.95344 0.97643 1.22686 0.92132 1.05871 0.94703 1.22174 0.86874 0.98206 0.95232 1.46091 1.13963 1.58062 1.20261 1.20301 0.84715 0.78717 0.84429 1.90761 1.18849 1.49207 1.80158 0.90853 0.91446 0.91384 0.90267 0.89766 0.75033 0.85971 0.85203 0.92010 0.86029 0.86617 0.88011 0.88293 0.89685 0.90643 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.41 37.16 0.31 -1.30 16 2 C -0.10 -0.78 4.94 -26.73 -0.13 -0.91 16 3 C -0.12 -1.22 0.57 -155.68 -0.09 -1.31 16 4 C 0.53 7.96 6.29 -10.99 -0.07 7.89 16 5 O -0.52 -9.48 13.16 5.55 0.07 -9.41 16 6 N -0.65 -10.24 4.10 -9.82 -0.04 -10.28 16 7 C 0.03 0.59 6.27 -83.62 -0.52 0.06 16 8 C -0.06 -1.30 8.68 -39.42 -0.34 -1.64 16 9 C -0.22 -5.14 9.16 -39.42 -0.36 -5.50 16 10 C 0.15 3.70 6.65 -39.09 -0.26 3.44 16 11 O -0.18 -5.16 9.76 0.00 0.00 -5.16 16 12 C -0.39 -11.16 9.48 30.88 0.29 -10.87 16 13 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 14 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 16 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C -0.18 -3.91 9.98 -39.42 -0.39 -4.30 16 21 C -0.09 -1.70 9.96 -39.41 -0.39 -2.10 16 22 C -0.12 -0.90 5.94 -25.10 -0.15 -1.05 16 23 C 0.10 0.50 7.78 -3.12 -0.02 0.48 16 24 N -0.73 -5.44 6.24 -59.20 -0.37 -5.81 16 25 C 0.53 5.94 6.53 -10.86 -0.07 5.86 16 26 O -0.51 -7.31 14.94 5.55 0.08 -7.22 16 27 H 0.07 0.73 5.87 -51.92 -0.31 0.42 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.70 5.70 -51.93 -0.30 0.41 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.41 5.75 4.99 -40.82 -0.20 5.55 16 33 H 0.12 2.46 6.38 -52.48 -0.33 2.12 16 34 H 0.13 3.00 5.63 -52.49 -0.30 2.70 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 37 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.10 1.00 7.15 -51.93 -0.37 0.63 16 39 H 0.10 0.56 7.90 -51.93 -0.41 0.15 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.41 2.38 8.96 -40.82 -0.37 2.02 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -35.08 341.79 -6.61 -41.69 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.95 Total: 10.32 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.30 Total: -10.23 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.35 Total: -41.04 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.16 Total: -21.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.08 -6.61 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331846973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.445 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds