Wall clock time and date at job start Tue Mar 31 2020 13:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46713 * 2 1 4 4 C 1.50693 * 110.43422 * 64.90936 * 3 2 1 5 5 O 1.21291 * 120.00554 * 113.75708 * 4 3 2 6 6 N 1.34780 * 119.99674 * 293.75009 * 4 3 2 7 7 C 1.39998 * 119.99732 * 184.47552 * 6 4 3 8 8 C 1.38918 * 120.00126 * 322.95354 * 7 6 4 9 9 C 1.38003 * 120.00060 * 179.72620 * 8 7 6 10 10 C 1.38903 * 119.99877 * 0.25650 * 9 8 7 11 11 O 1.35784 * 119.99896 * 179.97438 * 10 9 8 12 12 C 1.34811 * 117.00001 * 354.48924 * 11 10 9 13 13 H 1.08002 * 119.99657 * 5.06257 * 12 11 10 14 14 C 1.38626 * 120.00185 * 185.06109 * 12 11 10 15 15 N 1.31574 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00007 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47145 * 60.00178 * 16 14 12 18 18 H 1.48508 * 109.46872 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47109 * 299.99838 * 16 14 12 20 20 C 1.38908 * 120.00451 * 359.97438 * 10 9 8 21 21 C 1.38005 * 120.00246 * 0.02562 * 20 10 9 22 22 C 1.54627 * 110.48223 * 187.44746 * 3 2 1 23 23 C 1.54475 * 101.76691 * 94.01466 * 22 3 2 24 24 N 1.46767 * 105.47286 * 25.41263 * 23 22 3 25 25 C 1.34416 * 111.29966 * 342.98622 * 24 23 22 26 26 O 1.21284 * 124.94024 * 180.44689 * 25 24 23 27 27 H 1.09009 * 109.47074 * 52.07879 * 1 2 3 28 28 H 1.09000 * 109.47128 * 172.06824 * 1 2 3 29 29 H 1.08990 * 109.47615 * 292.07023 * 1 2 3 30 30 H 1.09003 * 109.47191 * 240.00350 * 2 1 3 31 31 H 1.08996 * 109.47039 * 119.99917 * 2 1 3 32 32 H 0.97000 * 120.00297 * 4.47080 * 6 4 3 33 33 H 1.08006 * 120.00110 * 359.97438 * 8 7 6 34 34 H 1.07994 * 120.00106 * 180.22896 * 9 8 7 35 35 H 0.97001 * 119.99932 * 179.97438 * 15 14 12 36 36 H 1.08005 * 120.00132 * 179.97438 * 20 10 9 37 37 H 1.07999 * 120.00218 * 180.02562 * 21 20 10 38 38 H 1.09005 * 110.96768 * 212.13548 * 22 3 2 39 39 H 1.09000 * 110.97194 * 335.89186 * 22 3 2 40 40 H 1.09001 * 110.24830 * 144.41564 * 23 22 3 41 41 H 1.09004 * 110.24789 * 266.41438 * 23 22 3 42 42 H 0.97000 * 124.34862 * 162.98912 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6507 2.1382 1.2789 5 8 2.5061 2.4810 2.0675 6 7 0.3519 2.3795 1.5463 7 6 -0.0041 3.1079 2.6876 8 6 0.7110 2.9439 3.8673 9 6 0.3636 3.6661 4.9908 10 6 -0.7043 4.5530 4.9436 11 8 -1.0464 5.2632 6.0492 12 6 -0.3847 4.9783 7.1886 13 1 0.4337 4.2737 7.1760 14 6 -0.7547 5.5898 8.3765 15 7 -1.7521 6.4478 8.3919 16 14 0.1627 5.1955 9.9552 17 1 1.5951 5.5542 9.7981 18 1 -0.4231 5.9743 11.0758 19 1 0.0449 3.7442 10.2469 20 6 -1.4224 4.7135 3.7654 21 6 -1.0751 3.9914 2.6418 22 6 3.5744 1.4740 -0.1878 23 6 3.7011 1.6514 -1.7171 24 7 2.4561 2.3033 -2.1401 25 6 1.5042 2.1965 -1.1971 26 8 0.3792 2.6394 -1.2925 27 1 -0.3634 0.6316 -0.8107 28 1 -0.3633 -1.0178 -0.1418 29 1 -0.3634 0.3861 0.9522 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -0.3361 2.0486 0.9480 33 1 1.5413 2.2542 3.9041 34 1 0.9218 3.5414 5.9069 35 1 -2.0112 6.8754 9.2231 36 1 -2.2530 5.4029 3.7288 37 1 -1.6331 4.1165 1.7256 38 1 4.0148 2.3195 0.3408 39 1 4.0263 0.5361 0.1350 40 1 4.5572 2.2832 -1.9539 41 1 3.8023 0.6805 -2.2023 42 1 2.3357 2.7534 -2.9909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331846973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:40 Heat of formation + Delta-G solvation = -88.122973 kcal Electronic energy + Delta-G solvation = -26657.990535 eV Core-core repulsion = 22795.990511 eV Total energy + Delta-G solvation = -3862.000024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.59783 -41.01195 -40.04955 -38.28459 -37.47200 -35.89454 -34.81920 -34.09518 -31.91817 -31.11426 -29.78815 -28.41723 -27.28034 -24.38849 -24.09485 -23.74760 -22.75411 -22.21015 -20.77385 -19.86332 -19.10444 -18.54392 -18.00054 -17.89916 -17.23687 -16.57985 -16.25461 -15.94197 -15.61065 -15.50830 -15.40189 -15.23312 -15.03907 -14.72869 -14.58366 -14.31006 -14.24107 -13.90678 -13.58841 -13.31211 -13.24908 -13.16075 -12.78671 -12.70424 -12.61256 -12.45445 -12.15246 -12.10980 -11.80486 -11.41464 -11.19497 -10.93656 -10.75163 -10.52618 -10.10188 -9.89100 -8.67092 -8.47472 -6.14914 0.44011 0.50362 1.19964 1.35069 1.44689 1.51360 1.58827 2.05821 2.18146 2.38323 2.78712 3.09724 3.13664 3.25579 3.47291 3.63261 3.77007 3.94624 4.06611 4.07204 4.27378 4.34516 4.39766 4.43955 4.59671 4.69654 4.73113 4.78287 4.98032 4.98493 5.04439 5.05951 5.08812 5.15119 5.29529 5.30272 5.41154 5.54356 5.65417 5.72857 5.91944 6.00404 6.09207 6.42320 6.96501 7.06292 7.13771 7.75065 8.75172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.002836 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.149356 B = 9870.465077 C =10267.899121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 C -0.113 4.113 4 C 0.522 3.478 5 O -0.554 6.554 6 N -0.645 5.645 7 C 0.053 3.947 8 C -0.068 4.068 9 C -0.226 4.226 10 C 0.111 3.889 11 O -0.226 6.226 12 C -0.416 4.416 13 H 0.100 0.900 14 C -0.020 4.020 15 N -0.919 5.919 16 Si 1.018 2.982 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.179 4.179 21 C -0.082 4.082 22 C -0.117 4.117 23 C 0.102 3.898 24 N -0.715 5.715 25 C 0.524 3.476 26 O -0.555 6.555 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.274 0.726 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -16.477 -23.167 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.132 4.132 3 C -0.119 4.119 4 C 0.309 3.691 5 O -0.432 6.432 6 N -0.294 5.294 7 C -0.040 4.040 8 C -0.088 4.088 9 C -0.245 4.245 10 C 0.060 3.940 11 O -0.132 6.132 12 C -0.492 4.492 13 H 0.117 0.883 14 C -0.218 4.218 15 N -0.557 5.557 16 Si 0.837 3.163 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.181 1.181 20 C -0.199 4.199 21 C -0.102 4.102 22 C -0.155 4.155 23 C -0.021 4.021 24 N -0.370 5.370 25 C 0.309 3.691 26 O -0.433 6.433 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.095 0.905 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 11.431 -15.761 -22.455 29.721 hybrid contribution -0.338 0.507 0.446 0.755 sum 11.092 -15.254 -22.009 28.985 Atomic orbital electron populations 1.22216 0.95642 1.04005 1.02085 1.21506 0.96340 0.89539 1.05825 1.21821 1.00819 0.98919 0.90373 1.20619 0.81930 0.78586 0.87961 1.90701 1.50250 1.52449 1.49822 1.43717 1.08621 1.53040 1.23998 1.17503 0.99983 0.99336 0.87192 1.20873 0.98982 0.98583 0.90357 1.21119 1.00811 1.02493 1.00112 1.19867 0.93828 0.91570 0.88721 1.83944 1.58576 1.54733 1.15942 1.21779 1.15527 1.27812 0.84128 0.88294 1.26573 0.97579 0.95457 1.02187 1.70181 1.28372 1.27923 1.29197 0.84664 0.77952 0.79168 0.74534 1.18313 1.19377 1.18103 1.20264 1.03021 1.05349 0.91254 1.20739 0.97421 0.94115 0.97937 1.22781 0.89786 1.06265 0.96633 1.22437 0.86193 1.00291 0.93211 1.46124 1.13921 1.57074 1.19900 1.20458 0.84712 0.78715 0.85239 1.90739 1.20550 1.51006 1.81010 0.91906 0.89513 0.93360 0.86842 0.89186 0.73683 0.85130 0.85885 0.91736 0.85430 0.83136 0.90545 0.85700 0.87627 0.87093 0.73654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.41 71.98 0.61 -2.18 16 2 C -0.09 -1.17 4.94 30.60 0.15 -1.02 16 3 C -0.11 -2.04 0.57 -52.94 -0.03 -2.07 16 4 C 0.52 15.03 6.29 87.65 0.55 15.58 16 5 O -0.55 -19.70 13.16 -3.07 -0.04 -19.74 16 6 N -0.64 -19.62 4.10 -303.37 -1.24 -20.86 16 7 C 0.05 2.01 6.27 38.16 0.24 2.25 16 8 C -0.07 -2.85 8.68 22.38 0.19 -2.65 16 9 C -0.23 -10.83 9.16 22.37 0.20 -10.63 16 10 C 0.11 5.82 6.65 22.59 0.15 5.97 16 11 O -0.23 -13.96 9.76 -22.93 -0.22 -14.19 16 12 C -0.42 -25.00 9.48 67.91 0.64 -24.36 16 13 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 14 C -0.02 -1.17 5.49 84.82 0.47 -0.71 16 15 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 16 Si 1.02 43.88 29.55 68.60 2.03 45.91 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 C -0.18 -8.02 9.98 22.38 0.22 -7.80 16 21 C -0.08 -3.10 9.96 22.38 0.22 -2.87 16 22 C -0.12 -1.41 5.94 31.65 0.19 -1.22 16 23 C 0.10 0.56 7.78 86.83 0.68 1.23 16 24 N -0.72 -8.19 6.24 -459.81 -2.87 -11.06 16 25 C 0.52 10.35 6.53 87.90 0.57 10.93 16 26 O -0.55 -14.89 14.94 -3.04 -0.05 -14.94 16 27 H 0.06 1.12 5.87 -2.38 -0.01 1.11 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.91 5.70 -2.39 -0.01 0.90 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 11.22 4.99 -92.71 -0.46 10.76 16 33 H 0.13 5.25 6.38 -2.91 -0.02 5.23 16 34 H 0.12 5.96 5.63 -2.91 -0.02 5.94 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.13 5.46 8.06 -2.91 -0.02 5.44 16 37 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.08 1.36 7.15 -2.38 -0.02 1.34 16 39 H 0.12 0.85 7.90 -2.39 -0.02 0.84 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.42 3.50 8.96 -92.71 -0.83 2.67 16 Total: -1.00 -82.08 341.79 2.76 -79.32 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.20 Total: 32.06 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.06 Total: -19.55 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.82 Total: -88.88 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.31 Total: -48.87 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -82.08 2.76 -79.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331846973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.801 kcal (2) G-P(sol) polarization free energy of solvation -82.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds