Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99699 * 2 1 4 4 H 1.48497 * 109.47293 * 269.99894 * 3 2 1 5 5 H 1.48507 * 109.47150 * 29.99939 * 3 2 1 6 6 H 1.48498 * 109.47004 * 149.99650 * 3 2 1 7 7 C 1.37878 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46733 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47036 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00474 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99889 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99531 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.52583 * 109.24405 * 295.56145 * 17 16 15 19 19 C 1.53049 * 109.97728 * 169.67280 * 18 17 16 20 20 S 1.81672 * 108.96611 * 63.70794 * 19 18 17 21 21 O 1.42100 * 108.66151 * 191.35458 * 20 19 18 22 22 O 1.42092 * 108.74885 * 60.04280 * 20 19 18 23 23 C 1.81670 * 101.30540 * 305.68014 * 20 19 18 24 24 C 1.52581 * 109.24103 * 174.44468 * 17 16 15 25 25 H 0.96995 * 120.00501 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47791 * 60.00316 * 9 7 2 27 27 H 1.09003 * 109.47505 * 299.99385 * 9 7 2 28 28 H 1.09000 * 109.47419 * 60.00032 * 10 9 7 29 29 H 1.08999 * 109.47179 * 299.99657 * 10 9 7 30 30 H 1.08999 * 109.47710 * 59.99429 * 11 10 9 31 31 H 1.09007 * 109.46967 * 299.99639 * 11 10 9 32 32 H 0.96998 * 119.99761 * 359.97438 * 12 11 10 33 33 H 0.96992 * 120.00503 * 359.97438 * 15 13 12 34 34 H 1.09001 * 109.46891 * 60.00097 * 16 15 13 35 35 H 1.08993 * 109.47378 * 299.99469 * 16 15 13 36 36 H 1.09003 * 109.23299 * 55.00476 * 17 16 15 37 37 H 1.09002 * 109.38725 * 289.87078 * 18 17 16 38 38 H 1.09005 * 109.39046 * 49.55436 * 18 17 16 39 39 H 1.08999 * 109.58468 * 303.84931 * 19 18 17 40 40 H 1.09000 * 109.63033 * 183.58926 * 19 18 17 41 41 H 1.09006 * 109.54969 * 294.44253 * 23 20 19 42 42 H 1.08996 * 109.62830 * 174.20606 * 23 20 19 43 43 H 1.09002 * 109.38761 * 310.44586 * 24 17 16 44 44 H 1.08997 * 109.38579 * 70.23480 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0030 13 6 1.9834 -7.3713 0.0023 14 8 0.7880 -7.5935 0.0006 15 7 2.8593 -8.3956 0.0035 16 6 2.3709 -9.7768 0.0033 17 6 3.5610 -10.7385 0.0042 18 6 4.3437 -10.5712 -1.2949 19 6 5.6705 -11.3292 -1.2073 20 16 5.3260 -13.1051 -1.0404 21 8 6.5328 -13.7720 -0.6966 22 8 4.5927 -13.5370 -2.1782 23 6 4.2224 -13.1197 0.4026 24 6 3.0509 -12.1697 0.1434 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5572 -0.8896 27 1 0.6242 -2.5568 0.8903 28 1 2.8715 -3.6038 0.8923 29 1 2.8728 -3.6046 -0.8877 30 1 0.8548 -5.0450 -0.8894 31 1 0.8529 -5.0447 0.8906 32 1 3.3862 -5.9233 0.0040 33 1 3.8129 -8.2184 0.0045 34 1 1.7664 -9.9483 -0.8873 35 1 1.7645 -9.9480 0.8926 36 1 4.2107 -10.5050 0.8477 37 1 3.7560 -10.9641 -2.1246 38 1 4.5427 -9.5129 -1.4638 39 1 6.2322 -10.9834 -0.3396 40 1 6.2527 -11.1540 -2.1120 41 1 4.7711 -12.7900 1.2849 42 1 3.8445 -14.1292 0.5643 43 1 2.3496 -12.2245 0.9761 44 1 2.5447 -12.4644 -0.7758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335804616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -126.803945 kcal Electronic energy + Delta-G solvation = -23959.590307 eV Core-core repulsion = 20231.356901 eV Total energy + Delta-G solvation = -3728.233406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.09602 -38.55782 -37.39365 -36.51713 -35.51766 -34.30995 -33.30437 -32.48022 -31.26832 -29.50975 -26.69114 -24.62712 -24.29634 -22.88197 -21.17104 -20.88408 -20.40920 -19.37602 -18.23461 -17.37624 -16.91336 -16.69844 -16.28643 -16.05962 -15.78786 -15.16071 -14.94677 -14.65713 -14.49172 -14.28816 -14.09215 -13.87702 -13.70736 -13.49993 -12.82985 -12.63311 -12.49896 -12.42451 -12.30820 -12.01712 -11.84016 -11.80711 -11.69341 -11.45305 -11.17968 -10.92439 -10.75441 -10.61628 -10.60189 -10.18443 -9.88910 -9.47239 -9.30595 -9.14903 -8.66746 -8.39227 -6.03783 -4.07016 -0.51978 2.12290 2.68539 3.12653 3.28983 3.29398 3.33880 3.35515 3.38007 3.84237 3.86434 4.01821 4.03773 4.26872 4.34354 4.42820 4.44937 4.63262 4.72986 4.93785 4.98678 5.13910 5.18851 5.31924 5.32709 5.37817 5.48543 5.62202 5.68983 5.77930 6.14629 6.30913 6.48043 6.58912 6.74262 6.98531 6.99853 7.61492 7.74157 7.94897 8.06810 8.35645 8.67823 8.99645 9.57171 11.07434 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034242 B = 0.001763 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.504444 B =15882.154814 C =16407.433739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.699 3.301 14 O -0.591 6.591 15 N -0.754 5.754 16 C 0.146 3.854 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.603 4.603 20 S 2.414 3.586 21 O -0.945 6.945 22 O -0.935 6.935 23 C -0.602 4.602 24 C -0.105 4.105 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -27.590 0.737 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.469 6.469 15 N -0.411 5.411 16 C 0.021 3.979 17 C -0.140 4.140 18 C -0.149 4.149 19 C -0.732 4.732 20 S 2.596 3.404 21 O -0.942 6.942 22 O -0.932 6.932 23 C -0.731 4.731 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.880 -28.375 0.225 30.390 hybrid contribution 1.223 1.789 0.568 2.240 sum 12.102 -26.586 0.793 29.222 Atomic orbital electron populations 1.69961 1.06047 1.26710 1.50486 1.25037 0.94871 0.99321 0.95291 0.86577 0.79771 0.83429 0.78088 1.20664 1.21205 1.19928 1.21195 0.92966 0.90940 1.50997 0.92670 1.19031 0.93858 0.90807 0.97712 1.21891 0.99791 0.93341 1.00796 1.21524 0.91285 0.84124 1.01927 1.45394 1.10455 1.04477 1.79229 1.16005 0.85274 0.80781 0.78028 1.90933 1.14123 1.84116 1.57758 1.45121 1.08918 1.05245 1.81832 1.21101 0.94683 0.78865 1.03221 1.21613 0.98059 0.95417 0.98909 1.21419 0.92133 1.02896 0.98477 1.30228 1.06817 1.24036 1.12110 1.08166 0.76340 0.78305 0.77589 1.93605 1.44486 1.71576 1.84573 1.93604 1.73124 1.79340 1.47146 1.30220 1.13260 1.09090 1.20550 1.21258 0.96374 0.91331 1.05401 0.92908 0.96227 0.96235 0.92784 0.92786 0.91907 0.91937 0.77354 0.77204 0.90933 0.90943 0.89080 0.89099 0.89003 0.84764 0.84521 0.84774 0.84503 0.88701 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.13 2.31 5.67 -4.04 -0.02 2.29 16 12 N -0.74 -9.97 5.56 -65.22 -0.36 -10.33 16 13 C 0.70 9.74 8.57 -86.92 -0.74 9.00 16 14 O -0.59 -10.99 16.34 5.29 0.09 -10.90 16 15 N -0.75 -6.51 5.16 -65.22 -0.34 -6.85 16 16 C 0.15 1.03 5.03 -4.04 -0.02 1.01 16 17 C -0.12 -0.44 1.98 -91.04 -0.18 -0.62 16 18 C -0.11 -0.41 4.97 -26.92 -0.13 -0.54 16 19 C -0.60 -1.72 6.35 37.18 0.24 -1.48 16 20 S 2.41 12.44 5.30 -107.50 -0.57 11.87 16 21 O -0.95 -8.55 18.10 -57.82 -1.05 -9.60 16 22 O -0.93 -8.37 17.95 -57.82 -1.04 -9.41 16 23 C -0.60 -1.55 6.35 37.18 0.24 -1.31 16 24 C -0.10 -0.33 5.02 -26.93 -0.14 -0.47 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 4.06 8.49 -40.82 -0.35 3.71 16 33 H 0.39 2.18 7.64 -40.82 -0.31 1.86 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.09 0.18 8.09 -51.93 -0.42 -0.24 16 37 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 38 H 0.09 0.32 6.91 -51.93 -0.36 -0.04 16 39 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.13 0.10 8.14 -51.92 -0.42 -0.33 16 42 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.25 8.06 -51.93 -0.42 -0.17 16 44 H 0.09 0.31 8.01 -51.93 -0.42 -0.11 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -39.16 370.22 -10.73 -49.89 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -7.30 Total: -3.35 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.46 Total: -7.31 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.04 Total: -43.02 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -2.00 Total: -29.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 12.44 SS G_CDS: -0.57 Total: 11.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.16 -10.73 -49.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335804616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.917 kcal (2) G-P(sol) polarization free energy of solvation -39.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds