Wall clock time and date at job start Tue Mar 31 2020 12:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99699 * 2 1 4 4 H 1.48497 * 109.47293 * 269.99894 * 3 2 1 5 5 H 1.48507 * 109.47150 * 29.99939 * 3 2 1 6 6 H 1.48498 * 109.47004 * 149.99650 * 3 2 1 7 7 C 1.37878 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46733 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47036 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00474 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99889 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99531 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.52583 * 109.24405 * 295.56145 * 17 16 15 19 19 C 1.53049 * 109.97728 * 169.67280 * 18 17 16 20 20 S 1.81672 * 108.96611 * 63.70794 * 19 18 17 21 21 O 1.42100 * 108.66151 * 191.35458 * 20 19 18 22 22 O 1.42092 * 108.74885 * 60.04280 * 20 19 18 23 23 C 1.81670 * 101.30540 * 305.68014 * 20 19 18 24 24 C 1.52581 * 109.24103 * 174.44468 * 17 16 15 25 25 H 0.96995 * 120.00501 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47791 * 60.00316 * 9 7 2 27 27 H 1.09003 * 109.47505 * 299.99385 * 9 7 2 28 28 H 1.09000 * 109.47419 * 60.00032 * 10 9 7 29 29 H 1.08999 * 109.47179 * 299.99657 * 10 9 7 30 30 H 1.08999 * 109.47710 * 59.99429 * 11 10 9 31 31 H 1.09007 * 109.46967 * 299.99639 * 11 10 9 32 32 H 0.96998 * 119.99761 * 359.97438 * 12 11 10 33 33 H 0.96992 * 120.00503 * 359.97438 * 15 13 12 34 34 H 1.09001 * 109.46891 * 60.00097 * 16 15 13 35 35 H 1.08993 * 109.47378 * 299.99469 * 16 15 13 36 36 H 1.09003 * 109.23299 * 55.00476 * 17 16 15 37 37 H 1.09002 * 109.38725 * 289.87078 * 18 17 16 38 38 H 1.09005 * 109.39046 * 49.55436 * 18 17 16 39 39 H 1.08999 * 109.58468 * 303.84931 * 19 18 17 40 40 H 1.09000 * 109.63033 * 183.58926 * 19 18 17 41 41 H 1.09006 * 109.54969 * 294.44253 * 23 20 19 42 42 H 1.08996 * 109.62830 * 174.20606 * 23 20 19 43 43 H 1.09002 * 109.38761 * 310.44586 * 24 17 16 44 44 H 1.08997 * 109.38579 * 70.23480 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0030 13 6 1.9834 -7.3713 0.0023 14 8 0.7880 -7.5935 0.0006 15 7 2.8593 -8.3956 0.0035 16 6 2.3709 -9.7768 0.0033 17 6 3.5610 -10.7385 0.0042 18 6 4.3437 -10.5712 -1.2949 19 6 5.6705 -11.3292 -1.2073 20 16 5.3260 -13.1051 -1.0404 21 8 6.5328 -13.7720 -0.6966 22 8 4.5927 -13.5370 -2.1782 23 6 4.2224 -13.1197 0.4026 24 6 3.0509 -12.1697 0.1434 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5572 -0.8896 27 1 0.6242 -2.5568 0.8903 28 1 2.8715 -3.6038 0.8923 29 1 2.8728 -3.6046 -0.8877 30 1 0.8548 -5.0450 -0.8894 31 1 0.8529 -5.0447 0.8906 32 1 3.3862 -5.9233 0.0040 33 1 3.8129 -8.2184 0.0045 34 1 1.7664 -9.9483 -0.8873 35 1 1.7645 -9.9480 0.8926 36 1 4.2107 -10.5050 0.8477 37 1 3.7560 -10.9641 -2.1246 38 1 4.5427 -9.5129 -1.4638 39 1 6.2322 -10.9834 -0.3396 40 1 6.2527 -11.1540 -2.1120 41 1 4.7711 -12.7900 1.2849 42 1 3.8445 -14.1292 0.5643 43 1 2.3496 -12.2245 0.9761 44 1 2.5447 -12.4644 -0.7758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335804616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:24 Heat of formation + Delta-G solvation = -158.407084 kcal Electronic energy + Delta-G solvation = -23960.960722 eV Core-core repulsion = 20231.356901 eV Total energy + Delta-G solvation = -3729.603821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08327 -39.08224 -37.92273 -37.03638 -36.94504 -35.22534 -35.08655 -32.93784 -32.73901 -30.19536 -28.33310 -25.50033 -24.70920 -24.25848 -22.27797 -21.80982 -21.46486 -19.78048 -19.23627 -18.52357 -17.79392 -17.36597 -17.23523 -16.91116 -16.62276 -16.48595 -15.92067 -15.67032 -15.44131 -15.22621 -14.81828 -14.62422 -14.25741 -14.22353 -13.86501 -13.71371 -13.56555 -13.23558 -13.15627 -13.04357 -12.73784 -12.70421 -12.52533 -12.39052 -12.33091 -12.15353 -11.80134 -11.64339 -11.63229 -11.52701 -11.28401 -11.11877 -10.88540 -10.54004 -10.34865 -9.71526 -8.18095 -6.29453 -0.87339 1.42807 1.44051 1.54866 1.74203 1.81419 2.19098 2.43011 2.78271 2.98210 3.15657 3.33933 3.56837 3.59867 3.72425 3.80191 4.09546 4.16653 4.20746 4.26473 4.38744 4.42810 4.59114 4.60834 4.72672 4.86183 4.87814 4.94788 4.98847 5.00853 5.04499 5.18314 5.19830 5.30652 5.49258 5.54154 5.57742 5.73549 5.86269 6.06139 6.24285 6.88211 7.16822 7.40054 7.63181 8.93911 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034242 B = 0.001763 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.504444 B =15882.154814 C =16407.433739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.695 3.305 14 O -0.642 6.642 15 N -0.730 5.730 16 C 0.141 3.859 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.585 4.585 20 S 2.406 3.594 21 O -0.992 6.992 22 O -0.985 6.985 23 C -0.582 4.582 24 C -0.110 4.110 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.008 1.008 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.412 0.588 33 H 0.414 0.586 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -27.364 1.818 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.395 3.605 14 O -0.524 6.524 15 N -0.387 5.387 16 C 0.017 3.983 17 C -0.130 4.130 18 C -0.155 4.155 19 C -0.716 4.716 20 S 2.594 3.406 21 O -0.989 6.989 22 O -0.983 6.983 23 C -0.714 4.714 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.249 0.751 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.165 0.835 43 H 0.125 0.875 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.609 -28.217 1.281 31.353 hybrid contribution 0.345 1.704 0.254 1.757 sum 13.954 -26.513 1.535 30.000 Atomic orbital electron populations 1.70112 1.07936 1.27750 1.51736 1.26039 0.95761 1.03595 0.94891 0.85412 0.78691 0.78300 0.78403 1.19898 1.21166 1.18354 1.21685 0.93769 0.91974 1.50307 0.91443 1.18956 0.94515 0.93028 0.95071 1.21580 0.98384 0.91667 1.02144 1.21048 0.91391 0.84736 1.00356 1.45009 1.10807 1.03609 1.79201 1.16204 0.85115 0.81459 0.77742 1.90906 1.16672 1.84860 1.59988 1.44922 1.09299 1.04659 1.79848 1.21241 0.96247 0.78449 1.02353 1.21579 0.96903 0.94500 0.99984 1.21480 0.92388 1.03374 0.98290 1.30066 1.06861 1.20616 1.14085 1.08040 0.75610 0.79272 0.77642 1.93545 1.46558 1.73610 1.85163 1.93540 1.73764 1.81048 1.49906 1.30049 1.12168 1.09869 1.19348 1.21315 0.96784 0.91130 1.05660 0.92865 0.99016 0.98956 0.91271 0.91338 0.93698 0.93615 0.75104 0.74868 0.92383 0.91486 0.86116 0.90149 0.88131 0.81653 0.83800 0.81832 0.83516 0.87516 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.34 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 11 C 0.15 5.11 5.67 86.38 0.49 5.60 16 12 N -0.73 -18.35 5.56 -478.52 -2.66 -21.01 16 13 C 0.70 18.45 8.57 179.06 1.53 19.98 16 14 O -0.64 -23.98 16.34 -4.00 -0.07 -24.04 16 15 N -0.73 -10.74 5.16 -478.52 -2.47 -13.21 16 16 C 0.14 1.72 5.03 86.38 0.43 2.16 16 17 C -0.11 -0.45 1.98 -11.07 -0.02 -0.47 16 18 C -0.12 -0.54 4.97 30.47 0.15 -0.39 16 19 C -0.58 -1.68 6.35 72.00 0.46 -1.22 16 20 S 2.41 22.59 5.30 -56.49 -0.30 22.29 16 21 O -0.99 -17.61 18.10 -127.38 -2.31 -19.92 16 22 O -0.99 -18.26 17.95 -127.38 -2.29 -20.54 16 23 C -0.58 -1.43 6.35 72.00 0.46 -0.97 16 24 C -0.11 -0.43 5.02 30.47 0.15 -0.28 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 32 H 0.41 7.18 8.49 -92.71 -0.79 6.40 16 33 H 0.41 2.91 7.64 -92.71 -0.71 2.20 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.12 -0.15 8.09 -2.39 -0.02 -0.17 16 37 H 0.08 0.58 8.01 -2.39 -0.02 0.56 16 38 H 0.10 0.34 6.91 -2.38 -0.02 0.32 16 39 H 0.17 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.16 -0.49 8.14 -2.38 -0.02 -0.51 16 42 H 0.15 0.17 8.14 -2.39 -0.02 0.16 16 43 H 0.11 0.25 8.06 -2.39 -0.02 0.23 16 44 H 0.08 0.48 8.01 -2.39 -0.02 0.46 16 Total: -1.00 -88.31 370.22 -3.61 -91.92 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -0.49 Total: 2.70 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 4.66 Total: -7.02 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.85 Total: -90.62 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -4.66 Total: -64.51 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 22.59 SS G_CDS: -0.30 Total: 22.29 kcal Total: -88.31 -3.61 -91.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335804616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.486 kcal (2) G-P(sol) polarization free energy of solvation -88.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds