Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48496 * 109.47174 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47185 * 119.99851 * 3 2 1 6 6 H 1.48495 * 109.47205 * 240.00061 * 3 2 1 7 7 C 1.39926 * 119.99565 * 179.72251 * 2 1 3 8 8 H 1.07998 * 120.00134 * 150.25234 * 7 2 1 9 9 C 1.41412 * 120.00416 * 330.25460 * 7 2 1 10 10 C 1.40790 * 120.20428 * 336.80217 * 9 7 2 11 11 C 1.37658 * 119.89567 * 179.67246 * 10 9 7 12 12 C 1.38519 * 120.32557 * 0.62918 * 11 10 9 13 13 C 1.39304 * 120.42546 * 359.67013 * 12 11 10 14 14 N 1.39732 * 119.95158 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00182 * 324.93674 * 14 13 12 16 16 O 1.21368 * 119.99678 * 5.70391 * 15 14 13 17 17 C 1.49351 * 119.99891 * 185.70078 * 15 14 13 18 18 O 1.21358 * 120.00470 * 0.02562 * 17 15 14 19 19 N 1.34780 * 119.99891 * 180.02562 * 17 15 14 20 20 C 1.46501 * 120.00102 * 180.02562 * 19 17 15 21 21 C 1.52994 * 109.47226 * 180.02562 * 20 19 17 22 22 H 1.08997 * 110.46196 * 54.29365 * 21 20 19 23 23 C 1.54511 * 110.51380 * 176.90502 * 21 20 19 24 24 C 1.54477 * 104.06412 * 118.64201 * 23 21 20 25 25 O 1.44421 * 104.80415 * 23.97562 * 24 23 21 26 26 C 1.44644 * 105.37065 * 319.56694 * 25 24 23 27 27 C 1.38346 * 120.09090 * 359.97438 * 13 12 11 28 28 H 0.96993 * 120.00429 * 174.03835 * 1 2 3 29 29 H 1.07996 * 120.05073 * 359.97251 * 10 9 7 30 30 H 1.07997 * 119.83398 * 180.34292 * 11 10 9 31 31 H 1.07991 * 119.78531 * 179.69209 * 12 11 10 32 32 H 0.97007 * 120.00267 * 144.94467 * 14 13 12 33 33 H 0.96997 * 120.00086 * 0.02562 * 19 17 15 34 34 H 1.09004 * 109.46820 * 300.00151 * 20 19 17 35 35 H 1.08997 * 109.47569 * 59.99600 * 20 19 17 36 36 H 1.08998 * 110.50595 * 237.28538 * 23 21 20 37 37 H 1.08993 * 110.50883 * 359.85438 * 23 21 20 38 38 H 1.09001 * 110.36937 * 142.81261 * 24 23 21 39 39 H 1.09005 * 110.36594 * 265.14458 * 24 23 21 40 40 H 1.08993 * 110.33687 * 281.59291 * 26 25 24 41 41 H 1.08997 * 110.50395 * 159.18387 * 26 25 24 42 42 H 1.07999 * 120.16021 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2775 2.7464 0.0006 5 1 3.0961 1.6963 1.2126 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2118 0.0059 8 1 2.9811 -1.2758 -0.4579 9 6 1.4405 -2.3529 0.6190 10 6 0.4576 -2.2061 1.6162 11 6 -0.0953 -3.3213 2.2041 12 6 0.3200 -4.5884 1.8286 13 6 1.2961 -4.7491 0.8479 14 7 1.7072 -6.0319 0.4764 15 6 1.7713 -7.0126 1.3987 16 8 1.3744 -6.8106 2.5277 17 6 2.3306 -8.3478 1.0313 18 8 2.7278 -8.5496 -0.0975 19 7 2.3942 -9.3286 1.9535 20 6 2.9434 -10.6382 1.5934 21 6 2.9004 -11.5620 2.8122 22 1 1.8899 -11.6108 3.2179 23 6 3.4028 -12.9746 2.4389 24 6 4.6435 -13.1810 3.3358 25 8 4.4396 -12.2944 4.4575 26 6 3.8945 -11.0798 3.8920 27 6 1.8582 -3.6405 0.2404 28 1 -0.4850 -0.8354 -0.0872 29 1 0.1344 -1.2202 1.9161 30 1 -0.8532 -3.2077 2.9650 31 1 -0.1161 -5.4571 2.2991 32 1 1.9466 -6.2166 -0.4454 33 1 2.0764 -9.1675 2.8557 34 1 2.3504 -11.0719 0.7882 35 1 3.9752 -10.5210 1.2621 36 1 2.6415 -13.7220 2.6623 37 1 3.6793 -13.0156 1.3855 38 1 4.6987 -14.2155 3.6748 39 1 5.5508 -12.9085 2.7967 40 1 4.6869 -10.4839 3.4393 41 1 3.3740 -10.5029 4.6564 42 1 2.6147 -3.7639 -0.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336455801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = -102.621910 kcal Electronic energy + Delta-G solvation = -25302.574552 eV Core-core repulsion = 21439.945806 eV Total energy + Delta-G solvation = -3862.628746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81598 -39.90441 -38.79245 -37.36488 -35.79488 -34.73903 -33.23040 -32.57678 -29.84879 -29.81450 -28.63093 -26.66941 -25.14518 -24.21380 -23.07877 -21.39230 -21.21393 -20.94578 -19.91685 -18.49884 -18.10881 -17.19330 -16.56589 -16.29873 -16.12883 -15.66467 -15.59454 -15.21942 -14.85027 -14.62881 -14.21038 -14.08337 -13.80168 -13.53750 -13.26098 -12.86602 -12.80452 -12.34223 -12.26155 -12.09461 -11.84048 -11.63077 -11.47387 -11.31085 -11.16994 -11.13600 -10.67656 -10.43004 -10.25109 -10.24328 -9.78843 -9.58036 -9.52500 -9.26262 -8.87170 -7.73443 -7.30751 -7.18204 -4.49183 1.37325 2.30572 2.68049 2.76089 3.14079 3.23730 3.34612 3.39729 3.47618 3.68192 3.99098 4.06655 4.16700 4.33120 4.48177 4.57333 4.57896 4.77522 4.79489 5.09575 5.19441 5.23573 5.32607 5.35467 5.43389 5.46360 5.59696 5.93431 6.07658 6.31039 6.34730 6.47838 6.64829 6.72869 6.83685 6.95247 7.28692 7.37474 7.59620 7.64643 7.74923 7.82466 7.90128 8.11648 8.15761 8.34503 8.69160 8.82846 9.97791 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.002115 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.120418 B =13238.411167 C =13309.091411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.043 3.957 3 Si 1.063 2.937 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.109 3.891 10 C -0.221 4.221 11 C -0.075 4.075 12 C -0.242 4.242 13 C 0.157 3.843 14 N -0.632 5.632 15 C 0.498 3.502 16 O -0.504 6.504 17 C 0.512 3.488 18 O -0.520 6.520 19 N -0.705 5.705 20 C 0.127 3.873 21 C -0.137 4.137 22 H 0.095 0.905 23 C -0.147 4.147 24 C 0.043 3.957 25 O -0.375 6.375 26 C 0.046 3.954 27 C -0.247 4.247 28 H 0.299 0.701 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.413 0.587 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.215 -20.682 3.224 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.180 4.180 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.241 4.241 11 C -0.094 4.094 12 C -0.263 4.263 13 C 0.066 3.934 14 N -0.276 5.276 15 C 0.279 3.721 16 O -0.379 6.379 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.360 5.360 20 C 0.003 3.997 21 C -0.156 4.156 22 H 0.113 0.887 23 C -0.185 4.185 24 C -0.034 4.034 25 O -0.293 6.293 26 C -0.031 4.031 27 C -0.268 4.268 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.249 0.751 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.029 -19.120 3.488 20.076 hybrid contribution 0.116 -1.759 -0.378 1.803 sum 5.145 -20.880 3.110 21.728 Atomic orbital electron populations 1.70458 1.08354 1.34300 1.27879 1.27021 0.95554 1.04363 0.91109 0.83674 0.75778 0.73832 0.78096 1.19858 1.19904 1.20096 1.20494 1.05590 0.94966 1.34161 0.90550 1.17397 0.90449 0.91559 0.90049 1.21223 1.04379 0.97340 1.01125 1.20526 0.98178 0.92519 0.98164 1.20399 1.03579 0.97001 1.05314 1.17509 0.96084 0.81208 0.98615 1.43159 1.63451 1.08841 1.12178 1.19950 0.80963 0.85331 0.85869 1.90766 1.45722 1.81206 1.20195 1.20299 0.79538 0.85656 0.85237 1.90759 1.46640 1.82068 1.20082 1.45737 1.63184 1.11900 1.15159 1.21538 0.99987 0.81449 0.96686 1.22833 1.01785 0.95149 0.95854 0.88678 1.22931 0.98586 0.95772 1.01198 1.23443 0.96972 0.95389 0.87570 1.89180 1.84442 1.25933 1.29769 1.23626 0.95457 0.88072 0.95964 1.20649 1.07802 0.91194 1.07163 0.88727 0.87548 0.88675 0.87221 0.75064 0.74971 0.90399 0.90566 0.89993 0.89788 0.88888 0.92038 0.91605 0.88536 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 12.28 55.55 0.68 -19.79 16 2 C 0.04 1.06 4.84 -17.35 -0.08 0.98 16 3 Si 1.06 21.18 30.02 -169.99 -5.10 16.08 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.52 -13.69 8.95 -37.74 -0.34 -14.02 16 8 H 0.08 1.94 8.00 -52.49 -0.42 1.52 16 9 C 0.11 2.84 5.31 -106.85 -0.57 2.28 16 10 C -0.22 -5.62 8.07 -38.83 -0.31 -5.93 16 11 C -0.07 -1.75 10.02 -39.69 -0.40 -2.15 16 12 C -0.24 -5.57 8.71 -39.08 -0.34 -5.91 16 13 C 0.16 3.51 6.29 -83.82 -0.53 2.98 16 14 N -0.63 -11.62 5.31 -10.34 -0.05 -11.68 16 15 C 0.50 8.52 7.73 -11.63 -0.09 8.43 16 16 O -0.50 -9.58 13.86 5.48 0.08 -9.51 16 17 C 0.51 7.21 7.89 -11.63 -0.09 7.12 16 18 O -0.52 -8.18 16.48 5.49 0.09 -8.09 16 19 N -0.71 -7.33 5.41 -60.76 -0.33 -7.66 16 20 C 0.13 1.00 4.82 -4.04 -0.02 0.98 16 21 C -0.14 -0.86 3.16 -89.05 -0.28 -1.14 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.15 -0.75 6.74 -25.16 -0.17 -0.92 16 24 C 0.04 0.27 7.64 37.93 0.29 0.55 16 25 O -0.37 -3.45 11.65 -35.23 -0.41 -3.86 16 26 C 0.05 0.34 6.97 37.94 0.26 0.61 16 27 C -0.25 -5.93 9.71 -38.67 -0.38 -6.30 16 28 H 0.30 7.98 6.99 -40.82 -0.29 7.69 16 29 H 0.11 2.76 6.50 -52.49 -0.34 2.42 16 30 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.11 2.45 6.16 -52.49 -0.32 2.12 16 32 H 0.41 6.75 8.30 -40.82 -0.34 6.41 16 33 H 0.41 3.90 7.85 -40.82 -0.32 3.58 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.35 7.73 -51.93 -0.40 -0.05 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.51 7.78 -51.93 -0.40 0.10 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -30.31 355.48 -8.16 -38.47 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.43 Total: 13.12 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -3.04 Total: -12.44 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.30 Total: -39.13 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.24 Total: -21.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.10 Total: 16.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.31 -8.16 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336455801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.154 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds