Wall clock time and date at job start Tue Mar 31 2020 12:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48496 * 109.47174 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47185 * 119.99851 * 3 2 1 6 6 H 1.48495 * 109.47205 * 240.00061 * 3 2 1 7 7 C 1.39926 * 119.99565 * 179.72251 * 2 1 3 8 8 H 1.07998 * 120.00134 * 150.25234 * 7 2 1 9 9 C 1.41412 * 120.00416 * 330.25460 * 7 2 1 10 10 C 1.40790 * 120.20428 * 336.80217 * 9 7 2 11 11 C 1.37658 * 119.89567 * 179.67246 * 10 9 7 12 12 C 1.38519 * 120.32557 * 0.62918 * 11 10 9 13 13 C 1.39304 * 120.42546 * 359.67013 * 12 11 10 14 14 N 1.39732 * 119.95158 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00182 * 324.93674 * 14 13 12 16 16 O 1.21368 * 119.99678 * 5.70391 * 15 14 13 17 17 C 1.49351 * 119.99891 * 185.70078 * 15 14 13 18 18 O 1.21358 * 120.00470 * 0.02562 * 17 15 14 19 19 N 1.34780 * 119.99891 * 180.02562 * 17 15 14 20 20 C 1.46501 * 120.00102 * 180.02562 * 19 17 15 21 21 C 1.52994 * 109.47226 * 180.02562 * 20 19 17 22 22 H 1.08997 * 110.46196 * 54.29365 * 21 20 19 23 23 C 1.54511 * 110.51380 * 176.90502 * 21 20 19 24 24 C 1.54477 * 104.06412 * 118.64201 * 23 21 20 25 25 O 1.44421 * 104.80415 * 23.97562 * 24 23 21 26 26 C 1.44644 * 105.37065 * 319.56694 * 25 24 23 27 27 C 1.38346 * 120.09090 * 359.97438 * 13 12 11 28 28 H 0.96993 * 120.00429 * 174.03835 * 1 2 3 29 29 H 1.07996 * 120.05073 * 359.97251 * 10 9 7 30 30 H 1.07997 * 119.83398 * 180.34292 * 11 10 9 31 31 H 1.07991 * 119.78531 * 179.69209 * 12 11 10 32 32 H 0.97007 * 120.00267 * 144.94467 * 14 13 12 33 33 H 0.96997 * 120.00086 * 0.02562 * 19 17 15 34 34 H 1.09004 * 109.46820 * 300.00151 * 20 19 17 35 35 H 1.08997 * 109.47569 * 59.99600 * 20 19 17 36 36 H 1.08998 * 110.50595 * 237.28538 * 23 21 20 37 37 H 1.08993 * 110.50883 * 359.85438 * 23 21 20 38 38 H 1.09001 * 110.36937 * 142.81261 * 24 23 21 39 39 H 1.09005 * 110.36594 * 265.14458 * 24 23 21 40 40 H 1.08993 * 110.33687 * 281.59291 * 26 25 24 41 41 H 1.08997 * 110.50395 * 159.18387 * 26 25 24 42 42 H 1.07999 * 120.16021 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2775 2.7464 0.0006 5 1 3.0961 1.6963 1.2126 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2118 0.0059 8 1 2.9811 -1.2758 -0.4579 9 6 1.4405 -2.3529 0.6190 10 6 0.4576 -2.2061 1.6162 11 6 -0.0953 -3.3213 2.2041 12 6 0.3200 -4.5884 1.8286 13 6 1.2961 -4.7491 0.8479 14 7 1.7072 -6.0319 0.4764 15 6 1.7713 -7.0126 1.3987 16 8 1.3744 -6.8106 2.5277 17 6 2.3306 -8.3478 1.0313 18 8 2.7278 -8.5496 -0.0975 19 7 2.3942 -9.3286 1.9535 20 6 2.9434 -10.6382 1.5934 21 6 2.9004 -11.5620 2.8122 22 1 1.8899 -11.6108 3.2179 23 6 3.4028 -12.9746 2.4389 24 6 4.6435 -13.1810 3.3358 25 8 4.4396 -12.2944 4.4575 26 6 3.8945 -11.0798 3.8920 27 6 1.8582 -3.6405 0.2404 28 1 -0.4850 -0.8354 -0.0872 29 1 0.1344 -1.2202 1.9161 30 1 -0.8532 -3.2077 2.9650 31 1 -0.1161 -5.4571 2.2991 32 1 1.9466 -6.2166 -0.4454 33 1 2.0764 -9.1675 2.8557 34 1 2.3504 -11.0719 0.7882 35 1 3.9752 -10.5210 1.2621 36 1 2.6415 -13.7220 2.6623 37 1 3.6793 -13.0156 1.3855 38 1 4.6987 -14.2155 3.6748 39 1 5.5508 -12.9085 2.7967 40 1 4.6869 -10.4839 3.4393 41 1 3.3740 -10.5029 4.6564 42 1 2.6147 -3.7639 -0.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336455801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:29 Heat of formation + Delta-G solvation = -123.236086 kcal Electronic energy + Delta-G solvation = -25303.468450 eV Core-core repulsion = 21439.945806 eV Total energy + Delta-G solvation = -3863.522643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08429 -40.70359 -40.02087 -39.05273 -36.89982 -36.21776 -34.96557 -33.30018 -31.72522 -30.52936 -30.21087 -27.58841 -27.06599 -25.33643 -23.71481 -23.16606 -22.57960 -21.84975 -21.22794 -19.93193 -19.69965 -18.13216 -17.54981 -17.41115 -17.22901 -16.89657 -16.72218 -16.35374 -16.15199 -15.88422 -15.61734 -15.45613 -15.07554 -14.72266 -14.56615 -14.17820 -13.93360 -13.86784 -13.45759 -13.20609 -13.09577 -12.85127 -12.70447 -12.34849 -12.24509 -12.09594 -12.04046 -11.94964 -11.63100 -11.55297 -11.28228 -10.84612 -10.81048 -10.63553 -10.42202 -9.66783 -9.24062 -9.01374 -6.48601 0.04830 0.84476 0.88465 1.20994 1.52535 1.64634 1.82089 2.03071 2.32863 2.51934 2.63491 2.96082 3.25644 3.50224 3.53607 3.66262 3.79455 4.14670 4.23026 4.26531 4.33064 4.50410 4.55373 4.62619 4.69809 4.76224 4.82340 4.82877 4.88193 4.93170 4.93286 5.00208 5.10673 5.15459 5.42955 5.55571 5.68284 5.78101 5.79468 5.86482 5.90591 6.17475 6.22620 6.40154 6.60824 6.73475 6.81984 6.92127 7.99390 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.002115 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.120418 B =13238.411167 C =13309.091411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.009 3.991 3 Si 1.114 2.886 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.084 3.916 10 C -0.242 4.242 11 C -0.075 4.075 12 C -0.246 4.246 13 C 0.167 3.833 14 N -0.632 5.632 15 C 0.499 3.501 16 O -0.522 6.522 17 C 0.521 3.479 18 O -0.536 6.536 19 N -0.686 5.686 20 C 0.126 3.874 21 C -0.128 4.128 22 H 0.103 0.897 23 C -0.141 4.141 24 C 0.035 3.965 25 O -0.401 6.401 26 C 0.040 3.960 27 C -0.260 4.260 28 H 0.285 0.715 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.423 0.577 33 H 0.420 0.580 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -22.339 3.329 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.209 4.209 3 Si 0.931 3.069 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.081 3.919 10 C -0.262 4.262 11 C -0.093 4.093 12 C -0.266 4.266 13 C 0.074 3.926 14 N -0.278 5.278 15 C 0.281 3.719 16 O -0.398 6.398 17 C 0.301 3.699 18 O -0.414 6.414 19 N -0.340 5.340 20 C 0.004 3.996 21 C -0.147 4.147 22 H 0.121 0.879 23 C -0.179 4.179 24 C -0.041 4.041 25 O -0.320 6.320 26 C -0.036 4.036 27 C -0.281 4.281 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.261 0.739 33 H 0.258 0.742 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.608 -20.850 3.603 21.889 hybrid contribution -0.060 -1.469 -0.339 1.508 sum 5.548 -22.319 3.264 23.228 Atomic orbital electron populations 1.70568 1.09028 1.33298 1.29771 1.28419 0.95574 1.07425 0.89525 0.83041 0.74877 0.69819 0.79130 1.19531 1.19039 1.18046 1.20707 1.05889 0.96085 1.35544 0.90754 1.17741 0.91031 0.92604 0.90527 1.21173 1.05476 0.97383 1.02140 1.20801 0.98181 0.92166 0.98182 1.20620 1.03538 0.97101 1.05380 1.17508 0.94992 0.82575 0.97488 1.43097 1.63737 1.07804 1.13172 1.20526 0.79975 0.86157 0.85200 1.90750 1.46284 1.81809 1.20919 1.19634 0.79830 0.84905 0.85535 1.90768 1.47830 1.82027 1.20754 1.45751 1.61580 1.11935 1.14689 1.21742 0.99980 0.80122 0.97727 1.22769 1.01928 0.95359 0.94632 0.87867 1.22935 0.98312 0.95003 1.01687 1.23644 0.97685 0.95589 0.87167 1.89154 1.84712 1.26757 1.31425 1.23694 0.95670 0.87854 0.96399 1.20786 1.08324 0.91217 1.07810 0.90332 0.88937 0.86301 0.86226 0.73862 0.74223 0.89568 0.90417 0.88920 0.88545 0.87720 0.91638 0.92033 0.88400 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.82 12.28 21.82 0.27 -42.55 16 2 C 0.01 0.43 4.84 85.25 0.41 0.84 16 3 Si 1.11 42.50 30.02 68.60 2.06 44.56 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.55 -29.61 8.95 23.46 0.21 -29.40 16 8 H 0.07 3.86 8.00 -2.91 -0.02 3.84 16 9 C 0.08 4.50 5.31 -21.31 -0.11 4.39 16 10 C -0.24 -12.58 8.07 22.76 0.18 -12.39 16 11 C -0.07 -3.48 10.02 22.20 0.22 -3.26 16 12 C -0.25 -11.13 8.71 22.59 0.20 -10.93 16 13 C 0.17 7.40 6.29 38.16 0.24 7.64 16 14 N -0.63 -22.65 5.31 -304.99 -1.62 -24.27 16 15 C 0.50 16.36 7.73 87.24 0.67 17.04 16 16 O -0.52 -19.08 13.86 -3.30 -0.05 -19.13 16 17 C 0.52 13.68 7.89 87.24 0.69 14.37 16 18 O -0.54 -15.85 16.48 -3.27 -0.05 -15.90 16 19 N -0.69 -12.70 5.41 -464.51 -2.51 -15.21 16 20 C 0.13 1.67 4.82 86.38 0.42 2.09 16 21 C -0.13 -1.29 3.16 -9.78 -0.03 -1.32 16 22 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 23 C -0.14 -1.06 6.74 31.61 0.21 -0.85 16 24 C 0.04 0.37 7.64 72.48 0.55 0.92 16 25 O -0.40 -6.85 11.65 -148.98 -1.74 -8.59 16 26 C 0.04 0.55 6.97 72.49 0.51 1.05 16 27 C -0.26 -12.62 9.71 22.86 0.22 -12.40 16 28 H 0.28 15.76 6.99 -92.71 -0.65 15.11 16 29 H 0.09 4.98 6.50 -2.91 -0.02 4.96 16 30 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 31 H 0.12 5.17 6.16 -2.92 -0.02 5.16 16 32 H 0.42 13.41 8.30 -92.70 -0.77 12.64 16 33 H 0.42 6.96 7.85 -92.71 -0.73 6.24 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.08 8.02 -2.39 -0.02 1.06 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.51 7.73 -2.39 -0.02 0.49 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.06 0.87 7.78 -2.39 -0.02 0.85 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -65.45 355.48 0.65 -64.80 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.30 Total: 38.48 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.59 Total: -22.20 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.87 Total: -82.03 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.84 Total: -43.62 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.06 Total: 44.56 kcal Total: -65.45 0.65 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336455801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.435 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds