Wall clock time and date at job start Tue Mar 31 2020 12:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48499 * 109.46870 * 274.96530 * 3 2 1 5 5 H 1.48503 * 109.47129 * 34.96132 * 3 2 1 6 6 H 1.48498 * 109.47220 * 154.96506 * 3 2 1 7 7 C 1.39921 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00328 * 196.79035 * 7 2 1 9 9 C 1.41415 * 120.00138 * 16.79013 * 7 2 1 10 10 C 1.40785 * 120.20488 * 25.16805 * 9 7 2 11 11 C 1.37652 * 119.89609 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32700 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42622 * 0.02562 * 12 11 10 14 14 N 1.39745 * 119.95461 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99784 * 145.77374 * 14 13 12 16 16 O 1.21378 * 120.00427 * 354.89373 * 15 14 13 17 17 C 1.49357 * 119.99822 * 174.89446 * 15 14 13 18 18 O 1.21356 * 120.00075 * 359.97438 * 17 15 14 19 19 N 1.34783 * 120.00087 * 180.27714 * 17 15 14 20 20 C 1.46499 * 120.00199 * 179.72402 * 19 17 15 21 21 C 1.52993 * 109.47132 * 179.97438 * 20 19 17 22 22 H 1.09008 * 110.43556 * 303.90677 * 21 20 19 23 23 C 1.54811 * 110.49083 * 181.22347 * 21 20 19 24 24 C 1.54996 * 102.09277 * 220.44329 * 23 21 20 25 25 O 1.44381 * 103.49095 * 37.01533 * 24 23 21 26 26 C 1.43735 * 106.97687 * 319.94410 * 25 24 23 27 27 C 1.38340 * 120.09424 * 0.25739 * 13 12 11 28 28 H 0.96996 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05188 * 0.04479 * 10 9 7 30 30 H 1.08000 * 119.83658 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.78576 * 180.02562 * 12 11 10 32 32 H 0.96996 * 119.99829 * 325.77238 * 14 13 12 33 33 H 0.96999 * 119.99831 * 359.71789 * 19 17 15 34 34 H 1.09003 * 109.46810 * 299.99533 * 20 19 17 35 35 H 1.08996 * 109.47227 * 59.99588 * 20 19 17 36 36 H 1.09006 * 110.90238 * 338.63317 * 23 21 20 37 37 H 1.08992 * 110.91236 * 102.23927 * 23 21 20 38 38 H 1.09004 * 110.61558 * 278.51607 * 24 23 21 39 39 H 1.08997 * 110.75242 * 155.58565 * 24 23 21 40 40 H 1.09002 * 109.88144 * 267.08545 * 26 25 24 41 41 H 1.08997 * 109.88408 * 145.93825 * 26 25 24 42 42 H 1.07999 * 120.16843 * 179.74720 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3848 2.1070 -1.3948 5 1 1.4960 2.6202 0.8023 6 1 3.5884 1.4123 0.5925 7 6 2.0080 -1.2117 0.0005 8 1 3.0535 -1.2316 0.2707 9 6 1.3462 -2.4105 -0.3527 10 6 0.2108 -2.3742 -1.1843 11 6 -0.4288 -3.5449 -1.5237 12 6 0.0394 -4.7600 -1.0514 13 6 1.1615 -4.8116 -0.2278 14 7 1.6251 -6.0428 0.2435 15 6 2.9467 -6.2451 0.4134 16 8 3.7401 -5.3930 0.0703 17 6 3.4350 -7.5178 1.0237 18 8 2.6417 -8.3696 1.3671 19 7 4.7564 -7.7177 1.1987 20 6 5.2350 -8.9636 1.8029 21 6 6.7625 -8.9364 1.8854 22 1 7.1940 -8.7665 0.8988 23 6 7.2960 -10.2565 2.4931 24 6 8.4331 -9.7521 3.4177 25 8 7.9112 -8.5154 3.9496 26 6 7.2302 -7.8498 2.8729 27 6 1.8144 -3.6453 0.1291 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1576 -1.4293 -1.5557 30 1 -1.2994 -3.5159 -2.1621 31 1 -0.4689 -5.6732 -1.3236 32 1 0.9956 -6.7518 0.4485 33 1 5.3904 -7.0368 0.9245 34 1 4.8185 -9.0648 2.8050 35 1 4.9195 -9.8087 1.1912 36 1 6.5204 -10.7604 3.0699 37 1 7.6885 -10.9119 1.7158 38 1 9.3419 -9.5700 2.8440 39 1 8.6234 -10.4650 4.2199 40 1 7.9117 -7.1622 2.3721 41 1 6.3690 -7.3050 3.2596 42 1 2.6821 -3.6836 0.7709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336455805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:35 Heat of formation + Delta-G solvation = -96.067621 kcal Electronic energy + Delta-G solvation = -25485.591096 eV Core-core repulsion = 21623.246565 eV Total energy + Delta-G solvation = -3862.344530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71818 -39.84804 -38.67528 -37.14933 -35.69791 -34.53569 -33.09812 -32.49885 -29.89404 -29.82968 -28.55885 -26.62548 -25.36837 -24.15941 -22.84083 -21.27030 -21.11140 -20.84151 -19.75117 -18.48368 -17.59182 -17.12289 -16.64586 -16.26456 -15.81649 -15.53771 -15.45266 -15.26684 -14.94785 -14.66555 -14.35408 -13.96472 -13.52782 -13.26834 -13.04989 -12.94399 -12.75063 -12.24290 -12.19639 -11.76655 -11.73102 -11.53176 -11.47611 -11.27910 -11.21449 -11.16783 -10.93146 -10.49056 -10.14175 -10.04389 -9.71455 -9.48389 -9.43570 -9.12990 -9.04860 -7.51377 -7.02185 -6.75915 -4.38360 1.48353 2.41455 2.73879 2.90211 3.08057 3.12812 3.18238 3.52464 3.53245 3.76119 3.93909 4.05168 4.20157 4.40759 4.60302 4.66141 4.73681 4.78352 4.85833 5.17687 5.23478 5.28642 5.39775 5.45153 5.49940 5.65159 5.66408 6.00925 6.19085 6.33813 6.46841 6.57074 6.79309 6.96151 6.99376 7.04895 7.20510 7.40368 7.62791 7.74168 7.88466 8.02175 8.06299 8.13780 8.42436 8.62343 8.88253 8.92212 10.17951 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002657 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.942095 B =10536.490966 C =12034.594002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.167 4.167 11 C -0.092 4.092 12 C -0.255 4.255 13 C 0.144 3.856 14 N -0.632 5.632 15 C 0.496 3.504 16 O -0.499 6.499 17 C 0.513 3.487 18 O -0.522 6.522 19 N -0.706 5.706 20 C 0.127 3.873 21 C -0.138 4.138 22 H 0.095 0.905 23 C -0.146 4.146 24 C 0.045 3.955 25 O -0.376 6.376 26 C 0.045 3.955 27 C -0.209 4.209 28 H 0.280 0.720 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -16.075 2.993 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.187 4.187 11 C -0.111 4.111 12 C -0.276 4.276 13 C 0.053 3.947 14 N -0.277 5.277 15 C 0.277 3.723 16 O -0.374 6.374 17 C 0.294 3.706 18 O -0.398 6.398 19 N -0.361 5.361 20 C 0.004 3.996 21 C -0.157 4.157 22 H 0.113 0.887 23 C -0.184 4.184 24 C -0.031 4.031 25 O -0.295 6.295 26 C -0.031 4.031 27 C -0.230 4.230 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.246 0.754 33 H 0.251 0.749 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.420 -15.856 3.265 19.811 hybrid contribution 0.229 0.588 -0.264 0.684 sum 11.649 -15.268 3.001 19.437 Atomic orbital electron populations 1.69825 1.07546 1.29207 1.35345 1.25914 0.94760 1.01346 0.92223 0.86272 0.80627 0.80538 0.79141 1.19323 1.20297 1.18516 1.19593 0.97823 0.90875 1.40385 0.90255 1.17485 0.90955 0.91568 0.88390 1.21394 0.99158 0.96939 1.01200 1.20479 0.98572 0.92576 0.99458 1.20070 1.01977 0.97160 1.08399 1.17444 0.96633 0.82761 0.97893 1.43132 1.06380 1.15692 1.62530 1.19925 0.83937 0.87354 0.81121 1.90817 1.54421 1.44480 1.47633 1.20327 0.83111 0.87714 0.79484 1.90745 1.54746 1.45063 1.49221 1.45757 1.07172 1.20905 1.62218 1.21495 0.92317 0.86411 0.99356 1.22856 0.95363 0.96417 1.01036 0.88696 1.23138 0.99005 0.96573 0.99702 1.23569 0.95855 0.86352 0.97351 1.88910 1.72765 1.34262 1.33554 1.23345 0.97206 0.94587 0.88005 1.20965 1.04373 0.90955 1.06709 0.90865 0.86162 0.88787 0.88971 0.75353 0.74942 0.90415 0.90508 0.89779 0.89620 0.92029 0.88764 0.91693 0.89192 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.39 10.94 55.55 0.61 -19.78 16 2 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 8 H 0.08 2.09 7.90 -52.48 -0.41 1.68 16 9 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 10 C -0.17 -4.32 8.69 -38.83 -0.34 -4.66 16 11 C -0.09 -2.11 10.01 -39.69 -0.40 -2.51 16 12 C -0.25 -5.59 9.97 -39.09 -0.39 -5.98 16 13 C 0.14 3.25 6.25 -83.82 -0.52 2.73 16 14 N -0.63 -11.83 5.32 -10.34 -0.06 -11.89 16 15 C 0.50 8.90 7.61 -11.63 -0.09 8.81 16 16 O -0.50 -10.21 14.23 5.47 0.08 -10.13 16 17 C 0.51 7.57 7.89 -11.63 -0.09 7.48 16 18 O -0.52 -8.45 16.48 5.49 0.09 -8.36 16 19 N -0.71 -7.91 5.27 -60.76 -0.32 -8.23 16 20 C 0.13 1.11 4.78 -4.05 -0.02 1.09 16 21 C -0.14 -0.92 3.12 -89.10 -0.28 -1.20 16 22 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 23 C -0.15 -0.80 6.71 -24.72 -0.17 -0.96 16 24 C 0.05 0.29 7.72 38.21 0.29 0.59 16 25 O -0.38 -3.73 11.52 -35.23 -0.41 -4.13 16 26 C 0.05 0.38 7.07 37.73 0.27 0.65 16 27 C -0.21 -5.30 8.39 -38.66 -0.32 -5.62 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.41 6.65 8.30 -40.82 -0.34 6.31 16 33 H 0.41 4.28 7.79 -40.82 -0.32 3.97 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.83 7.57 -51.93 -0.39 0.44 16 42 H 0.11 2.72 6.48 -52.49 -0.34 2.38 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -30.88 356.13 -8.22 -39.11 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.48 Total: 12.10 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.08 Total: -7.80 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.23 Total: -39.90 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.24 Total: -22.63 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.88 -8.22 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336455805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.960 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds