Wall clock time and date at job start Tue Mar 31 2020 12:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48499 * 109.46870 * 274.96530 * 3 2 1 5 5 H 1.48503 * 109.47129 * 34.96132 * 3 2 1 6 6 H 1.48498 * 109.47220 * 154.96506 * 3 2 1 7 7 C 1.39921 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00328 * 196.79035 * 7 2 1 9 9 C 1.41415 * 120.00138 * 16.79013 * 7 2 1 10 10 C 1.40785 * 120.20488 * 25.16805 * 9 7 2 11 11 C 1.37652 * 119.89609 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32700 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42622 * 0.02562 * 12 11 10 14 14 N 1.39745 * 119.95461 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99784 * 145.77374 * 14 13 12 16 16 O 1.21378 * 120.00427 * 354.89373 * 15 14 13 17 17 C 1.49357 * 119.99822 * 174.89446 * 15 14 13 18 18 O 1.21356 * 120.00075 * 359.97438 * 17 15 14 19 19 N 1.34783 * 120.00087 * 180.27714 * 17 15 14 20 20 C 1.46499 * 120.00199 * 179.72402 * 19 17 15 21 21 C 1.52993 * 109.47132 * 179.97438 * 20 19 17 22 22 H 1.09008 * 110.43556 * 303.90677 * 21 20 19 23 23 C 1.54811 * 110.49083 * 181.22347 * 21 20 19 24 24 C 1.54996 * 102.09277 * 220.44329 * 23 21 20 25 25 O 1.44381 * 103.49095 * 37.01533 * 24 23 21 26 26 C 1.43735 * 106.97687 * 319.94410 * 25 24 23 27 27 C 1.38340 * 120.09424 * 0.25739 * 13 12 11 28 28 H 0.96996 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05188 * 0.04479 * 10 9 7 30 30 H 1.08000 * 119.83658 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.78576 * 180.02562 * 12 11 10 32 32 H 0.96996 * 119.99829 * 325.77238 * 14 13 12 33 33 H 0.96999 * 119.99831 * 359.71789 * 19 17 15 34 34 H 1.09003 * 109.46810 * 299.99533 * 20 19 17 35 35 H 1.08996 * 109.47227 * 59.99588 * 20 19 17 36 36 H 1.09006 * 110.90238 * 338.63317 * 23 21 20 37 37 H 1.08992 * 110.91236 * 102.23927 * 23 21 20 38 38 H 1.09004 * 110.61558 * 278.51607 * 24 23 21 39 39 H 1.08997 * 110.75242 * 155.58565 * 24 23 21 40 40 H 1.09002 * 109.88144 * 267.08545 * 26 25 24 41 41 H 1.08997 * 109.88408 * 145.93825 * 26 25 24 42 42 H 1.07999 * 120.16843 * 179.74720 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3848 2.1070 -1.3948 5 1 1.4960 2.6202 0.8023 6 1 3.5884 1.4123 0.5925 7 6 2.0080 -1.2117 0.0005 8 1 3.0535 -1.2316 0.2707 9 6 1.3462 -2.4105 -0.3527 10 6 0.2108 -2.3742 -1.1843 11 6 -0.4288 -3.5449 -1.5237 12 6 0.0394 -4.7600 -1.0514 13 6 1.1615 -4.8116 -0.2278 14 7 1.6251 -6.0428 0.2435 15 6 2.9467 -6.2451 0.4134 16 8 3.7401 -5.3930 0.0703 17 6 3.4350 -7.5178 1.0237 18 8 2.6417 -8.3696 1.3671 19 7 4.7564 -7.7177 1.1987 20 6 5.2350 -8.9636 1.8029 21 6 6.7625 -8.9364 1.8854 22 1 7.1940 -8.7665 0.8988 23 6 7.2960 -10.2565 2.4931 24 6 8.4331 -9.7521 3.4177 25 8 7.9112 -8.5154 3.9496 26 6 7.2302 -7.8498 2.8729 27 6 1.8144 -3.6453 0.1291 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1576 -1.4293 -1.5557 30 1 -1.2994 -3.5159 -2.1621 31 1 -0.4689 -5.6732 -1.3236 32 1 0.9956 -6.7518 0.4485 33 1 5.3904 -7.0368 0.9245 34 1 4.8185 -9.0648 2.8050 35 1 4.9195 -9.8087 1.1912 36 1 6.5204 -10.7604 3.0699 37 1 7.6885 -10.9119 1.7158 38 1 9.3419 -9.5700 2.8440 39 1 8.6234 -10.4650 4.2199 40 1 7.9117 -7.1622 2.3721 41 1 6.3690 -7.3050 3.2596 42 1 2.6821 -3.6836 0.7709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336455805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:34 Heat of formation + Delta-G solvation = -117.638908 kcal Electronic energy + Delta-G solvation = -25486.526497 eV Core-core repulsion = 21623.246565 eV Total energy + Delta-G solvation = -3863.279931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02547 -40.67952 -39.95998 -38.86997 -36.80684 -36.10074 -34.85558 -33.27461 -31.79311 -30.53824 -30.19275 -27.60591 -27.26702 -25.36165 -23.55267 -22.93999 -22.48590 -21.82024 -21.12133 -19.93074 -19.22819 -17.96246 -17.75092 -17.43677 -17.03223 -16.88419 -16.72294 -16.48093 -16.40378 -15.89246 -15.61453 -15.26859 -14.93846 -14.67675 -14.34502 -14.01459 -13.83967 -13.57886 -13.49461 -13.09423 -13.04174 -12.90576 -12.77264 -12.63374 -12.22410 -12.19145 -12.16321 -11.90910 -11.70398 -11.54163 -11.19602 -10.94044 -10.68074 -10.63515 -10.40053 -9.43459 -8.85082 -8.63641 -6.38367 0.10855 0.93681 1.02525 1.27396 1.38007 1.51021 1.51650 2.09102 2.21125 2.57450 2.71845 2.98776 3.30715 3.46380 3.61691 3.70216 3.83959 4.22362 4.26817 4.33719 4.43256 4.55108 4.58390 4.61874 4.76849 4.84228 4.86699 4.89659 4.99899 5.05147 5.05818 5.07615 5.11597 5.17161 5.28645 5.57871 5.76446 5.90317 5.93219 6.03915 6.07348 6.27050 6.35348 6.62430 6.69753 6.87371 6.94915 7.00315 8.32278 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002657 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.942095 B =10536.490966 C =12034.594002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.090 3.910 10 C -0.193 4.193 11 C -0.090 4.090 12 C -0.247 4.247 13 C 0.150 3.850 14 N -0.629 5.629 15 C 0.494 3.506 16 O -0.527 6.527 17 C 0.522 3.478 18 O -0.535 6.535 19 N -0.688 5.688 20 C 0.127 3.873 21 C -0.128 4.128 22 H 0.111 0.889 23 C -0.139 4.139 24 C 0.038 3.962 25 O -0.406 6.406 26 C 0.041 3.959 27 C -0.233 4.233 28 H 0.290 0.710 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.425 0.575 33 H 0.419 0.581 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -17.705 2.495 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.527 4.527 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.108 4.108 12 C -0.268 4.268 13 C 0.058 3.942 14 N -0.276 5.276 15 C 0.276 3.724 16 O -0.403 6.403 17 C 0.302 3.698 18 O -0.413 6.413 19 N -0.342 5.342 20 C 0.005 3.995 21 C -0.147 4.147 22 H 0.130 0.870 23 C -0.177 4.177 24 C -0.038 4.038 25 O -0.326 6.326 26 C -0.036 4.036 27 C -0.254 4.254 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.257 0.743 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.924 -17.537 2.778 21.388 hybrid contribution 0.100 0.935 -0.083 0.944 sum 12.025 -16.601 2.695 20.675 Atomic orbital electron populations 1.69857 1.08772 1.30633 1.35441 1.26715 0.95586 1.04315 0.91184 0.85190 0.78997 0.75966 0.79536 1.18439 1.18878 1.18685 1.19761 0.97677 0.92429 1.42866 0.91427 1.17824 0.91935 0.92335 0.89220 1.21373 0.99843 0.97628 1.02390 1.20840 0.98947 0.91986 0.99062 1.20487 1.01248 0.98272 1.06758 1.17508 0.96253 0.83423 0.97063 1.43049 1.07219 1.14758 1.62525 1.20564 0.83370 0.88244 0.80175 1.90808 1.55064 1.45845 1.48557 1.19647 0.84202 0.86169 0.79768 1.90748 1.55299 1.44939 1.50277 1.45786 1.05857 1.21835 1.60689 1.21697 0.93693 0.85208 0.98923 1.22824 0.93695 0.96729 1.01486 0.87046 1.23145 0.98593 0.95982 1.00008 1.23799 0.96503 0.85378 0.98108 1.88879 1.73178 1.35782 1.34737 1.23383 0.96858 0.95217 0.88159 1.20942 1.04789 0.91929 1.07751 0.89951 0.87516 0.85656 0.85147 0.73680 0.74348 0.91006 0.89369 0.89764 0.87329 0.90934 0.87715 0.91160 0.90748 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.13 10.94 21.82 0.24 -42.89 16 2 C 0.04 1.91 5.16 85.25 0.44 2.35 16 3 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.50 -28.06 9.05 23.46 0.21 -27.85 16 8 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 9 C 0.09 5.04 5.57 -21.31 -0.12 4.92 16 10 C -0.19 -10.17 8.69 22.75 0.20 -9.97 16 11 C -0.09 -4.04 10.01 22.20 0.22 -3.81 16 12 C -0.25 -10.37 9.97 22.59 0.23 -10.14 16 13 C 0.15 6.74 6.25 38.16 0.24 6.98 16 14 N -0.63 -23.03 5.32 -304.98 -1.62 -24.65 16 15 C 0.49 17.60 7.61 87.24 0.66 18.27 16 16 O -0.53 -21.90 14.23 -3.33 -0.05 -21.95 16 17 C 0.52 14.86 7.89 87.24 0.69 15.54 16 18 O -0.54 -16.50 16.48 -3.26 -0.05 -16.55 16 19 N -0.69 -14.53 5.27 -464.51 -2.45 -16.97 16 20 C 0.13 1.97 4.78 86.38 0.41 2.38 16 21 C -0.13 -1.45 3.12 -9.81 -0.03 -1.48 16 22 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 23 C -0.14 -1.15 6.71 31.90 0.21 -0.94 16 24 C 0.04 0.41 7.72 72.67 0.56 0.98 16 25 O -0.41 -7.73 11.52 -148.98 -1.72 -9.45 16 26 C 0.04 0.65 7.07 72.35 0.51 1.16 16 27 C -0.23 -12.22 8.39 22.86 0.19 -12.03 16 28 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 29 H 0.11 5.83 6.17 -2.91 -0.02 5.81 16 30 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.42 13.04 8.30 -92.71 -0.77 12.27 16 33 H 0.42 8.25 7.79 -92.71 -0.72 7.52 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 0.72 7.87 -2.38 -0.02 0.70 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.38 7.57 -2.39 -0.02 1.36 16 42 H 0.09 4.92 6.48 -2.91 -0.02 4.90 16 Total: -1.00 -68.95 356.13 0.59 -68.36 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.42 Total: 36.59 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.63 Total: -13.64 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.83 Total: -84.52 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.82 Total: -47.95 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -68.95 0.59 -68.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336455805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.279 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds