Wall clock time and date at job start Tue Mar 31 2020 12:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48501 * 109.46861 * 269.99726 * 3 2 1 5 5 H 1.48500 * 109.47294 * 29.99355 * 3 2 1 6 6 H 1.48501 * 109.47100 * 149.99910 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47356 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47547 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54017 * 68.37275 * 12 11 10 14 14 O 1.42100 * 110.54270 * 291.62670 * 12 11 10 15 15 N 1.65598 * 104.45478 * 179.97438 * 12 11 10 16 16 C 1.46931 * 120.63084 * 270.02841 * 15 12 11 17 17 C 1.53194 * 108.77629 * 126.36492 * 16 15 12 18 18 C 1.53039 * 109.31026 * 54.63121 * 17 16 15 19 19 C 1.53037 * 109.54101 * 298.63204 * 18 17 16 20 20 H 1.08999 * 109.50017 * 301.41283 * 19 18 17 21 21 C 1.53001 * 109.49926 * 181.31935 * 19 18 17 22 22 C 1.50699 * 109.47244 * 65.15815 * 21 19 18 23 23 N 1.34776 * 120.00146 * 179.97438 * 22 21 19 24 24 O 1.21284 * 119.99653 * 0.02562 * 22 21 19 25 25 C 1.46922 * 120.62869 * 89.99714 * 15 12 11 26 26 H 0.97005 * 120.00723 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46772 * 60.00682 * 9 7 2 28 28 H 1.09001 * 109.47202 * 300.00701 * 9 7 2 29 29 H 1.09008 * 109.46919 * 60.00491 * 10 9 7 30 30 H 1.09001 * 109.47375 * 300.00315 * 10 9 7 31 31 H 1.09001 * 109.47384 * 60.00079 * 11 10 9 32 32 H 1.09007 * 109.46917 * 299.99875 * 11 10 9 33 33 H 1.09000 * 109.57916 * 246.14858 * 16 15 12 34 34 H 1.08992 * 109.58752 * 6.43063 * 16 15 12 35 35 H 1.09000 * 109.49137 * 174.58300 * 17 16 15 36 36 H 1.08994 * 109.49898 * 294.67959 * 17 16 15 37 37 H 1.09000 * 109.46006 * 178.60912 * 18 17 16 38 38 H 1.09006 * 109.46060 * 58.65927 * 18 17 16 39 39 H 1.08998 * 109.47109 * 185.16498 * 21 19 18 40 40 H 1.09005 * 109.46791 * 305.16504 * 21 19 18 41 41 H 0.96999 * 120.00193 * 0.02562 * 23 22 21 42 42 H 0.97002 * 120.00043 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.58543 * 113.84649 * 25 15 12 44 44 H 1.09003 * 109.70593 * 353.48843 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3467 -0.0005 13 8 5.8601 -4.9798 -1.2378 14 8 5.8600 -4.9808 1.2362 15 7 7.8058 -4.2018 -0.0011 16 6 8.5510 -4.1354 -1.2657 17 6 9.4363 -2.8853 -1.2513 18 6 10.3193 -2.9048 -0.0015 19 6 9.4372 -2.8863 1.2489 20 1 8.8089 -1.9957 1.2378 21 6 10.3214 -2.8727 2.4975 22 6 11.1023 -1.5848 2.5460 23 7 11.9527 -1.3502 3.5650 24 8 10.9648 -0.7589 1.6686 25 6 8.5520 -4.1366 1.2629 26 1 -0.4851 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8896 28 1 3.8745 -0.6807 -0.8905 29 1 3.6578 -3.1505 -0.8898 30 1 3.6585 -3.1502 0.8903 31 1 5.9148 -2.1227 0.8901 32 1 5.9148 -2.1228 -0.8900 33 1 9.1745 -5.0235 -1.3693 34 1 7.8514 -4.0808 -2.0996 35 1 10.0655 -2.8749 -2.1413 36 1 8.8080 -1.9947 -1.2389 37 1 10.9679 -2.0287 -0.0014 38 1 10.9297 -3.8080 -0.0022 39 1 9.6958 -2.9521 3.3866 40 1 11.0121 -3.7153 2.4628 41 1 12.0624 -2.0106 4.2670 42 1 12.4551 -0.5211 3.5964 43 1 9.1755 -5.0247 1.3654 44 1 7.8547 -4.0812 2.0989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339856405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:22 Heat of formation + Delta-G solvation = -134.904593 kcal Electronic energy + Delta-G solvation = -25468.380437 eV Core-core repulsion = 21739.795760 eV Total energy + Delta-G solvation = -3728.584676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23520 -38.42317 -37.01521 -35.79545 -34.78301 -34.06668 -33.59010 -32.19321 -31.99649 -28.34982 -27.93913 -24.81719 -23.53144 -22.92345 -21.13798 -20.45246 -20.04637 -18.83193 -17.80034 -17.49536 -17.10164 -16.88237 -16.15945 -15.95646 -15.68564 -14.99749 -14.87689 -14.32465 -14.23487 -14.15407 -14.05212 -13.65551 -13.36302 -12.90004 -12.59675 -12.42323 -12.33054 -12.10899 -11.90091 -11.89781 -11.72115 -11.56787 -11.34316 -11.21449 -10.94574 -10.92228 -10.83835 -10.64797 -10.21921 -10.07283 -10.03429 -9.84455 -9.64611 -9.26012 -8.98668 -8.56949 -6.06836 -4.05982 0.38675 2.29224 2.66399 3.15767 3.28800 3.36355 3.39147 3.96593 4.21153 4.25364 4.42375 4.46292 4.54964 4.62738 4.84961 4.90931 5.04994 5.06819 5.10719 5.15139 5.20580 5.27183 5.30840 5.39531 5.55851 5.57024 5.73976 5.79301 5.90064 6.03428 6.10033 6.15611 6.18330 6.30141 6.39240 6.45430 6.69486 6.92138 7.15473 7.29204 7.73000 7.90134 8.49343 8.97537 9.54524 11.06442 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003704 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.223808 B = 7557.327218 C = 8950.193870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.616 4.616 12 S 2.600 3.400 13 O -0.957 6.957 14 O -0.959 6.959 15 N -1.002 6.002 16 C 0.120 3.880 17 C -0.135 4.135 18 C -0.116 4.116 19 C -0.092 4.092 20 H 0.087 0.913 21 C -0.140 4.140 22 C 0.516 3.484 23 N -0.860 5.860 24 O -0.536 6.536 25 C 0.126 3.874 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.401 0.599 42 H 0.400 0.600 43 H 0.072 0.928 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.263 -7.202 5.429 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.136 4.136 11 C -0.747 4.747 12 S 2.697 3.303 13 O -0.948 6.948 14 O -0.949 6.949 15 N -0.838 5.838 16 C -0.005 4.005 17 C -0.174 4.174 18 C -0.153 4.153 19 C -0.113 4.113 20 H 0.105 0.895 21 C -0.181 4.181 22 C 0.301 3.699 23 N -0.424 5.424 24 O -0.412 6.412 25 C 0.000 4.000 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.229 0.771 42 H 0.231 0.769 43 H 0.090 0.910 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.413 -7.543 4.757 28.827 hybrid contribution 0.854 1.738 0.473 1.994 sum 28.267 -5.804 5.230 29.327 Atomic orbital electron populations 1.69909 1.06280 1.26971 1.50784 1.25019 0.94749 0.99157 0.94453 0.86786 0.80345 0.83616 0.78589 1.20191 1.21264 1.19038 1.21140 0.89270 0.94755 1.51283 0.90733 1.19527 0.97281 0.90750 0.96736 1.21307 0.86738 1.02906 1.02689 1.30666 1.09286 1.23639 1.11157 1.05399 0.72459 0.78229 0.74223 1.93568 1.82733 1.73245 1.45217 1.93560 1.82782 1.73239 1.45307 1.57857 1.24586 1.89841 1.11526 1.21440 0.95864 0.98348 0.84862 1.21923 0.98683 0.98392 0.98431 1.21635 0.97744 1.02649 0.93302 1.21364 0.96822 0.99398 0.93699 0.89485 1.21704 0.99598 0.95825 1.00935 1.20718 0.79244 0.88852 0.81057 1.43945 1.46631 1.24438 1.27382 1.90753 1.65223 1.47593 1.37606 1.21413 0.95660 0.97519 0.85382 0.92635 0.96194 0.96612 0.91055 0.91055 0.85511 0.85451 0.91200 0.89055 0.90788 0.91170 0.89919 0.92412 0.88210 0.88435 0.77089 0.76936 0.91002 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 9 C 0.00 -0.10 4.04 -27.89 -0.11 -0.22 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.62 -9.27 6.18 37.16 0.23 -9.04 16 12 S 2.60 38.09 5.41 -107.50 -0.58 37.51 16 13 O -0.96 -16.64 16.72 -57.54 -0.96 -17.60 16 14 O -0.96 -16.32 16.73 -57.54 -0.96 -17.28 16 15 N -1.00 -11.11 3.22 -113.52 -0.37 -11.47 16 16 C 0.12 1.16 6.32 -3.71 -0.02 1.14 16 17 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 18 C -0.12 -0.98 4.92 -26.69 -0.13 -1.11 16 19 C -0.09 -0.77 1.98 -90.50 -0.18 -0.95 16 20 H 0.09 0.88 7.95 -51.93 -0.41 0.47 16 21 C -0.14 -0.79 5.18 -27.88 -0.14 -0.94 16 22 C 0.52 4.02 7.81 -10.99 -0.09 3.93 16 23 N -0.86 -3.62 8.87 31.22 0.28 -3.34 16 24 O -0.54 -6.61 14.82 5.55 0.08 -6.53 16 25 C 0.13 1.13 5.59 -3.71 -0.02 1.11 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.47 7.20 -51.92 -0.37 0.09 16 28 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.13 1.70 8.14 -51.92 -0.42 1.27 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.92 7.09 -51.93 -0.37 0.55 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.83 5.95 -51.93 -0.31 0.53 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.40 0.45 8.83 -40.82 -0.36 0.09 16 42 H 0.40 1.55 8.93 -40.82 -0.36 1.18 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.83 7.11 -51.93 -0.37 0.46 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -38.43 362.84 -9.33 -47.75 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.19 Total: -1.31 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.20 Total: -23.12 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.68 Total: -42.04 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.84 Total: -41.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 38.09 SS G_CDS: -0.58 Total: 37.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.43 -9.33 -47.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.151 kcal (2) G-P(sol) polarization free energy of solvation -38.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds