Wall clock time and date at job start Tue Mar 31 2020 12:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48501 * 109.46861 * 269.99726 * 3 2 1 5 5 H 1.48500 * 109.47294 * 29.99355 * 3 2 1 6 6 H 1.48501 * 109.47100 * 149.99910 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47356 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47547 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54017 * 68.37275 * 12 11 10 14 14 O 1.42100 * 110.54270 * 291.62670 * 12 11 10 15 15 N 1.65598 * 104.45478 * 179.97438 * 12 11 10 16 16 C 1.46931 * 120.63084 * 270.02841 * 15 12 11 17 17 C 1.53194 * 108.77629 * 126.36492 * 16 15 12 18 18 C 1.53039 * 109.31026 * 54.63121 * 17 16 15 19 19 C 1.53037 * 109.54101 * 298.63204 * 18 17 16 20 20 H 1.08999 * 109.50017 * 301.41283 * 19 18 17 21 21 C 1.53001 * 109.49926 * 181.31935 * 19 18 17 22 22 C 1.50699 * 109.47244 * 65.15815 * 21 19 18 23 23 N 1.34776 * 120.00146 * 179.97438 * 22 21 19 24 24 O 1.21284 * 119.99653 * 0.02562 * 22 21 19 25 25 C 1.46922 * 120.62869 * 89.99714 * 15 12 11 26 26 H 0.97005 * 120.00723 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46772 * 60.00682 * 9 7 2 28 28 H 1.09001 * 109.47202 * 300.00701 * 9 7 2 29 29 H 1.09008 * 109.46919 * 60.00491 * 10 9 7 30 30 H 1.09001 * 109.47375 * 300.00315 * 10 9 7 31 31 H 1.09001 * 109.47384 * 60.00079 * 11 10 9 32 32 H 1.09007 * 109.46917 * 299.99875 * 11 10 9 33 33 H 1.09000 * 109.57916 * 246.14858 * 16 15 12 34 34 H 1.08992 * 109.58752 * 6.43063 * 16 15 12 35 35 H 1.09000 * 109.49137 * 174.58300 * 17 16 15 36 36 H 1.08994 * 109.49898 * 294.67959 * 17 16 15 37 37 H 1.09000 * 109.46006 * 178.60912 * 18 17 16 38 38 H 1.09006 * 109.46060 * 58.65927 * 18 17 16 39 39 H 1.08998 * 109.47109 * 185.16498 * 21 19 18 40 40 H 1.09005 * 109.46791 * 305.16504 * 21 19 18 41 41 H 0.96999 * 120.00193 * 0.02562 * 23 22 21 42 42 H 0.97002 * 120.00043 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.58543 * 113.84649 * 25 15 12 44 44 H 1.09003 * 109.70593 * 353.48843 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3467 -0.0005 13 8 5.8601 -4.9798 -1.2378 14 8 5.8600 -4.9808 1.2362 15 7 7.8058 -4.2018 -0.0011 16 6 8.5510 -4.1354 -1.2657 17 6 9.4363 -2.8853 -1.2513 18 6 10.3193 -2.9048 -0.0015 19 6 9.4372 -2.8863 1.2489 20 1 8.8089 -1.9957 1.2378 21 6 10.3214 -2.8727 2.4975 22 6 11.1023 -1.5848 2.5460 23 7 11.9527 -1.3502 3.5650 24 8 10.9648 -0.7589 1.6686 25 6 8.5520 -4.1366 1.2629 26 1 -0.4851 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8896 28 1 3.8745 -0.6807 -0.8905 29 1 3.6578 -3.1505 -0.8898 30 1 3.6585 -3.1502 0.8903 31 1 5.9148 -2.1227 0.8901 32 1 5.9148 -2.1228 -0.8900 33 1 9.1745 -5.0235 -1.3693 34 1 7.8514 -4.0808 -2.0996 35 1 10.0655 -2.8749 -2.1413 36 1 8.8080 -1.9947 -1.2389 37 1 10.9679 -2.0287 -0.0014 38 1 10.9297 -3.8080 -0.0022 39 1 9.6958 -2.9521 3.3866 40 1 11.0121 -3.7153 2.4628 41 1 12.0624 -2.0106 4.2670 42 1 12.4551 -0.5211 3.5964 43 1 9.1755 -5.0247 1.3654 44 1 7.8547 -4.0812 2.0989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339856405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:21 Heat of formation + Delta-G solvation = -166.138605 kcal Electronic energy + Delta-G solvation = -25469.734845 eV Core-core repulsion = 21739.795760 eV Total energy + Delta-G solvation = -3729.939085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82906 -39.12531 -38.27414 -37.06588 -36.53048 -34.59542 -34.29272 -34.23396 -32.70029 -30.17653 -28.50435 -25.73041 -25.20131 -23.57775 -22.33574 -21.59910 -20.75051 -19.85745 -19.01305 -18.70641 -18.07727 -17.67969 -17.28863 -17.20896 -16.27506 -16.24376 -16.07087 -15.63753 -15.41566 -14.98971 -14.82722 -14.73878 -14.46672 -14.10394 -13.98504 -13.69808 -13.47975 -13.25185 -13.21028 -13.01595 -12.88790 -12.73152 -12.63578 -12.58779 -11.98275 -11.93558 -11.87419 -11.68264 -11.51365 -11.43692 -11.31415 -11.22254 -10.80048 -10.78566 -10.51597 -9.86678 -8.32380 -6.37998 -0.77858 1.34360 1.36086 1.47933 1.65520 1.76495 2.33551 2.71992 2.80132 3.02545 3.13224 3.54011 3.73691 3.84361 3.91732 3.98597 4.06812 4.17794 4.30261 4.34356 4.49561 4.54903 4.57531 4.66222 4.71785 4.81614 4.85722 4.91233 4.91958 4.95218 5.08560 5.24713 5.30265 5.34538 5.42105 5.46039 5.55568 5.59913 5.66040 5.99712 6.22927 6.57522 6.69812 7.26626 7.46844 8.84560 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003704 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.223808 B = 7557.327218 C = 8950.193870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.543 4.543 8 H 0.032 0.968 9 C -0.005 4.005 10 C -0.102 4.102 11 C -0.615 4.615 12 S 2.620 3.380 13 O -0.987 6.987 14 O -0.983 6.983 15 N -0.995 5.995 16 C 0.115 3.885 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.091 4.091 20 H 0.064 0.936 21 C -0.136 4.136 22 C 0.510 3.490 23 N -0.844 5.844 24 O -0.590 6.590 25 C 0.119 3.881 26 H 0.268 0.732 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.418 0.582 42 H 0.403 0.597 43 H 0.097 0.903 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.715 -6.992 6.276 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.581 4.581 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.141 4.141 11 C -0.745 4.745 12 S 2.717 3.283 13 O -0.978 6.978 14 O -0.974 6.974 15 N -0.833 5.833 16 C -0.009 4.009 17 C -0.173 4.173 18 C -0.150 4.150 19 C -0.112 4.112 20 H 0.082 0.918 21 C -0.176 4.176 22 C 0.296 3.704 23 N -0.407 5.407 24 O -0.470 6.470 25 C -0.005 4.005 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.249 0.751 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.889 -7.366 5.651 32.254 hybrid contribution -0.201 1.590 0.239 1.621 sum 30.688 -5.776 5.890 31.778 Atomic orbital electron populations 1.70070 1.08381 1.28327 1.52289 1.26058 0.95675 1.03681 0.93897 0.85635 0.79579 0.77932 0.79384 1.18988 1.20795 1.16689 1.21541 0.92200 0.93373 1.51019 0.94945 1.19496 0.93849 0.93536 0.97456 1.21168 0.90411 1.00358 1.02158 1.30622 1.05513 1.25157 1.13243 1.04558 0.73294 0.77546 0.72944 1.93526 1.83881 1.73927 1.46429 1.93522 1.83842 1.73787 1.46217 1.57586 1.23040 1.89520 1.13131 1.21632 0.95828 0.99624 0.83837 1.21923 0.98615 0.97297 0.99465 1.21595 0.97565 1.02737 0.93108 1.21304 0.96836 0.97979 0.95065 0.91766 1.21728 0.99827 0.95697 1.00330 1.21119 0.79409 0.89005 0.80839 1.43835 1.45233 1.24866 1.26811 1.90737 1.67128 1.49380 1.39767 1.21687 0.95805 0.98905 0.84127 0.92352 0.95219 0.95453 0.91882 0.91708 0.83422 0.83538 0.89252 0.89729 0.89395 0.92505 0.91583 0.90523 0.86248 0.85432 0.75085 0.76656 0.88464 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 2 C 0.00 0.23 5.47 84.66 0.46 0.69 16 3 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.54 -32.17 9.66 25.60 0.25 -31.93 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C 0.00 -0.23 4.04 29.85 0.12 -0.11 16 10 C -0.10 -4.06 5.16 30.59 0.16 -3.90 16 11 C -0.61 -17.66 6.18 71.98 0.44 -17.22 16 12 S 2.62 74.10 5.41 -56.49 -0.31 73.79 16 13 O -0.99 -33.87 16.72 -127.65 -2.13 -36.01 16 14 O -0.98 -32.60 16.73 -127.65 -2.14 -34.73 16 15 N -0.99 -19.92 3.22 -513.06 -1.65 -21.58 16 16 C 0.12 1.97 6.32 86.36 0.55 2.52 16 17 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 18 C -0.11 -1.64 4.92 30.62 0.15 -1.49 16 19 C -0.09 -1.30 1.98 -10.72 -0.02 -1.32 16 20 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 21 C -0.14 -1.10 5.18 29.85 0.15 -0.94 16 22 C 0.51 6.89 7.81 87.66 0.68 7.57 16 23 N -0.84 -5.04 8.87 -173.53 -1.54 -6.58 16 24 O -0.59 -14.12 14.82 -3.04 -0.05 -14.17 16 25 C 0.12 1.79 5.59 86.36 0.48 2.27 16 26 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 27 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 28 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 29 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 32 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.58 7.09 -2.39 -0.02 1.56 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.25 5.95 -2.39 -0.01 1.23 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.42 -0.40 8.83 -92.71 -0.82 -1.22 16 42 H 0.40 2.35 8.93 -92.71 -0.83 1.52 16 43 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.41 7.11 -2.39 -0.02 1.39 16 Total: -1.00 -85.90 362.84 -2.70 -88.60 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.69 Total: 10.40 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.62 Total: -45.75 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.89 Total: -88.54 kcal Atomic # 8 Polarization: -80.59 SS G_CDS: -4.32 Total: -84.91 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.31 Total: 73.79 kcal Total: -85.90 -2.70 -88.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.536 kcal (2) G-P(sol) polarization free energy of solvation -85.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds