Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47042 * 300.00292 * 3 2 1 6 6 H 1.48502 * 109.47176 * 59.99435 * 3 2 1 7 7 C 1.37875 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47236 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47043 * 180.02562 * 11 10 9 13 13 O 1.42094 * 110.54620 * 68.37971 * 12 11 10 14 14 O 1.42107 * 110.54339 * 291.62376 * 12 11 10 15 15 N 1.65606 * 104.44768 * 180.02562 * 12 11 10 16 16 C 1.46926 * 120.63461 * 89.99790 * 15 12 11 17 17 C 1.53184 * 108.77356 * 233.60989 * 16 15 12 18 18 C 1.53035 * 109.31785 * 305.36292 * 17 16 15 19 19 C 1.53038 * 109.53662 * 61.36489 * 18 17 16 20 20 H 1.09001 * 109.49448 * 58.62489 * 19 18 17 21 21 C 1.52998 * 109.49947 * 178.68517 * 19 18 17 22 22 C 1.50706 * 109.47348 * 294.93804 * 21 19 18 23 23 N 1.34773 * 120.00081 * 179.72561 * 22 21 19 24 24 O 1.21283 * 119.99503 * 359.97438 * 22 21 19 25 25 C 1.46935 * 120.59887 * 270.02352 * 15 12 11 26 26 H 0.97005 * 119.99525 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46980 * 59.99278 * 9 7 2 28 28 H 1.09002 * 109.46615 * 299.99891 * 9 7 2 29 29 H 1.09005 * 109.46887 * 59.99805 * 10 9 7 30 30 H 1.08998 * 109.47244 * 300.00163 * 10 9 7 31 31 H 1.09005 * 109.46798 * 60.00417 * 11 10 9 32 32 H 1.09002 * 109.47200 * 300.00624 * 11 10 9 33 33 H 1.08997 * 109.58184 * 113.82209 * 16 15 12 34 34 H 1.08996 * 109.58138 * 353.39910 * 16 15 12 35 35 H 1.09009 * 109.49696 * 185.41134 * 17 16 15 36 36 H 1.09002 * 109.49963 * 65.32060 * 17 16 15 37 37 H 1.08999 * 109.45932 * 301.34823 * 18 17 16 38 38 H 1.08998 * 109.45583 * 181.38236 * 18 17 16 39 39 H 1.09001 * 109.47671 * 174.94013 * 21 19 18 40 40 H 1.08998 * 109.47454 * 54.94010 * 21 19 18 41 41 H 0.96998 * 120.00525 * 359.97438 * 23 22 21 42 42 H 0.97000 * 119.99521 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.62193 * 6.61771 * 25 15 12 44 44 H 1.09004 * 109.55724 * 246.19386 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6589 -6.3659 0.0019 13 8 3.3556 -6.4257 1.2390 14 8 3.3558 -6.4269 -1.2350 15 7 1.7085 -7.7221 0.0019 16 6 1.2793 -8.3354 -1.2624 17 6 -0.2459 -8.4774 -1.2486 18 6 -0.6711 -9.2511 0.0015 19 6 -0.2468 -8.4768 1.2515 20 1 -0.7047 -7.4877 1.2396 21 6 -0.7011 -9.2348 2.5004 22 6 -2.2071 -9.2695 2.5470 23 7 -2.8357 -9.8936 3.5628 24 8 -2.8533 -8.7397 1.6680 25 6 1.2783 -8.3340 1.2666 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8887 32 1 0.8537 -5.0446 0.8913 33 1 1.7370 -9.3193 -1.3650 34 1 1.5798 -7.7015 -2.0965 35 1 -0.5690 -9.0179 -2.1384 36 1 -0.7033 -7.4881 -1.2373 37 1 -0.1938 -10.2310 0.0019 38 1 -1.7540 -9.3747 0.0010 39 1 -0.3218 -8.7309 3.3894 40 1 -0.3151 -10.2536 2.4677 41 1 -2.3189 -10.3208 4.2637 42 1 -3.8049 -9.9162 3.5925 43 1 1.5777 -7.6994 2.1007 44 1 1.7364 -9.3176 1.3704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339856411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = -138.891973 kcal Electronic energy + Delta-G solvation = -25386.988868 eV Core-core repulsion = 21658.231286 eV Total energy + Delta-G solvation = -3728.757582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17109 -38.35618 -36.94862 -35.73127 -34.63492 -34.00572 -33.52380 -32.15812 -31.93001 -27.87958 -27.77190 -24.74644 -23.64734 -22.85914 -21.13231 -20.50951 -19.98622 -18.76344 -17.74527 -17.43825 -17.03407 -16.58846 -16.08667 -15.70922 -15.61103 -14.92490 -14.78181 -14.47800 -14.20759 -14.10204 -13.99611 -13.59422 -13.29814 -12.58101 -12.52957 -12.36137 -12.26126 -11.91516 -11.83360 -11.74465 -11.65817 -11.27450 -11.26920 -11.10134 -10.91913 -10.80771 -10.76867 -10.58198 -10.38947 -10.12771 -9.96325 -9.92655 -9.43889 -9.17629 -8.86438 -8.38969 -6.03416 -4.06475 0.46890 2.35694 2.73422 3.21759 3.30772 3.38199 3.43203 4.03539 4.28278 4.32158 4.44375 4.52878 4.61788 4.69480 4.91956 4.97884 5.12605 5.16016 5.22069 5.24376 5.26787 5.33018 5.37628 5.46191 5.61804 5.62922 5.80606 5.93241 5.97712 6.10139 6.16658 6.25909 6.28666 6.45313 6.48896 6.52647 6.90358 6.98083 7.60279 7.70080 7.94828 7.96489 8.35294 9.00097 9.58147 11.07799 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003278 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.641498 B = 8540.926349 C = 9711.453141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.105 4.105 11 C -0.609 4.609 12 S 2.598 3.402 13 O -0.961 6.961 14 O -0.960 6.960 15 N -1.002 6.002 16 C 0.121 3.879 17 C -0.136 4.136 18 C -0.116 4.116 19 C -0.093 4.093 20 H 0.088 0.912 21 C -0.140 4.140 22 C 0.516 3.484 23 N -0.861 5.861 24 O -0.534 6.534 25 C 0.127 3.873 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.401 0.599 42 H 0.400 0.600 43 H 0.092 0.908 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -25.201 5.405 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.695 3.305 13 O -0.952 6.952 14 O -0.950 6.950 15 N -0.838 5.838 16 C -0.005 4.005 17 C -0.175 4.175 18 C -0.153 4.153 19 C -0.113 4.113 20 H 0.106 0.894 21 C -0.180 4.180 22 C 0.301 3.699 23 N -0.424 5.424 24 O -0.410 6.410 25 C 0.001 3.999 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.229 0.771 42 H 0.231 0.769 43 H 0.110 0.890 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.940 -24.724 4.729 25.343 hybrid contribution -0.592 0.890 0.494 1.177 sum -3.533 -23.834 5.223 24.654 Atomic orbital electron populations 1.69977 1.06083 1.26632 1.50688 1.25027 0.94884 0.99373 0.95151 0.86503 0.80187 0.83543 0.77603 1.19600 1.20955 1.20953 1.21295 0.93269 0.90897 1.50889 0.92337 1.19064 0.93527 0.90449 0.97748 1.21494 0.99352 0.91784 1.01841 1.30607 1.16377 1.15869 1.11218 1.05467 0.75915 0.74961 0.74139 1.93549 1.70404 1.85899 1.45313 1.93558 1.70366 1.85845 1.45267 1.57853 1.70321 1.44160 1.11487 1.21430 0.94793 0.99336 0.84896 1.21927 0.95410 1.01747 0.98384 1.21630 1.02587 0.97744 0.93334 1.21364 0.95412 1.00869 0.93663 0.89387 1.21700 0.91980 1.03395 1.00951 1.20718 0.90985 0.77130 0.81070 1.43942 1.11324 1.59489 1.27674 1.90757 1.68151 1.44747 1.37375 1.21411 0.93507 0.99618 0.85376 0.92969 0.96119 0.96133 0.91676 0.91649 0.85458 0.85537 0.91278 0.89097 0.90830 0.91060 0.92488 0.89902 0.88238 0.88499 0.77128 0.76949 0.89007 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 11 C -0.61 -9.81 6.18 37.16 0.23 -9.58 16 12 S 2.60 39.66 5.41 -107.50 -0.58 39.08 16 13 O -0.96 -16.85 16.73 -57.54 -0.96 -17.82 16 14 O -0.96 -17.18 16.72 -57.54 -0.96 -18.14 16 15 N -1.00 -11.74 3.22 -113.52 -0.37 -12.11 16 16 C 0.12 1.24 6.31 -3.71 -0.02 1.22 16 17 C -0.14 -1.28 6.08 -26.62 -0.16 -1.44 16 18 C -0.12 -1.05 4.92 -26.69 -0.13 -1.18 16 19 C -0.09 -0.83 1.98 -90.50 -0.18 -1.01 16 20 H 0.09 0.96 7.96 -51.93 -0.41 0.55 16 21 C -0.14 -0.87 5.18 -27.88 -0.14 -1.01 16 22 C 0.52 4.29 7.81 -10.98 -0.09 4.20 16 23 N -0.86 -4.01 8.87 31.22 0.28 -3.73 16 24 O -0.53 -6.91 14.81 5.56 0.08 -6.83 16 25 C 0.13 1.21 5.60 -3.71 -0.02 1.19 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 32 H 0.13 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.97 7.10 -51.93 -0.37 0.61 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.88 5.94 -51.93 -0.31 0.58 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 42 H 0.40 1.72 8.93 -40.82 -0.36 1.36 16 43 H 0.09 0.88 7.10 -51.93 -0.37 0.51 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -37.86 366.42 -9.70 -47.56 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.22 Total: -1.06 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -1.21 Total: -23.07 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.65 Total: -42.05 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.84 Total: -42.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 39.66 SS G_CDS: -0.58 Total: 39.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.86 -9.70 -47.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.332 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds