Wall clock time and date at job start Tue Mar 31 2020 12:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47042 * 300.00292 * 3 2 1 6 6 H 1.48502 * 109.47176 * 59.99435 * 3 2 1 7 7 C 1.37875 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47236 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47043 * 180.02562 * 11 10 9 13 13 O 1.42094 * 110.54620 * 68.37971 * 12 11 10 14 14 O 1.42107 * 110.54339 * 291.62376 * 12 11 10 15 15 N 1.65606 * 104.44768 * 180.02562 * 12 11 10 16 16 C 1.46926 * 120.63461 * 89.99790 * 15 12 11 17 17 C 1.53184 * 108.77356 * 233.60989 * 16 15 12 18 18 C 1.53035 * 109.31785 * 305.36292 * 17 16 15 19 19 C 1.53038 * 109.53662 * 61.36489 * 18 17 16 20 20 H 1.09001 * 109.49448 * 58.62489 * 19 18 17 21 21 C 1.52998 * 109.49947 * 178.68517 * 19 18 17 22 22 C 1.50706 * 109.47348 * 294.93804 * 21 19 18 23 23 N 1.34773 * 120.00081 * 179.72561 * 22 21 19 24 24 O 1.21283 * 119.99503 * 359.97438 * 22 21 19 25 25 C 1.46935 * 120.59887 * 270.02352 * 15 12 11 26 26 H 0.97005 * 119.99525 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46980 * 59.99278 * 9 7 2 28 28 H 1.09002 * 109.46615 * 299.99891 * 9 7 2 29 29 H 1.09005 * 109.46887 * 59.99805 * 10 9 7 30 30 H 1.08998 * 109.47244 * 300.00163 * 10 9 7 31 31 H 1.09005 * 109.46798 * 60.00417 * 11 10 9 32 32 H 1.09002 * 109.47200 * 300.00624 * 11 10 9 33 33 H 1.08997 * 109.58184 * 113.82209 * 16 15 12 34 34 H 1.08996 * 109.58138 * 353.39910 * 16 15 12 35 35 H 1.09009 * 109.49696 * 185.41134 * 17 16 15 36 36 H 1.09002 * 109.49963 * 65.32060 * 17 16 15 37 37 H 1.08999 * 109.45932 * 301.34823 * 18 17 16 38 38 H 1.08998 * 109.45583 * 181.38236 * 18 17 16 39 39 H 1.09001 * 109.47671 * 174.94013 * 21 19 18 40 40 H 1.08998 * 109.47454 * 54.94010 * 21 19 18 41 41 H 0.96998 * 120.00525 * 359.97438 * 23 22 21 42 42 H 0.97000 * 119.99521 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.62193 * 6.61771 * 25 15 12 44 44 H 1.09004 * 109.55724 * 246.19386 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6589 -6.3659 0.0019 13 8 3.3556 -6.4257 1.2390 14 8 3.3558 -6.4269 -1.2350 15 7 1.7085 -7.7221 0.0019 16 6 1.2793 -8.3354 -1.2624 17 6 -0.2459 -8.4774 -1.2486 18 6 -0.6711 -9.2511 0.0015 19 6 -0.2468 -8.4768 1.2515 20 1 -0.7047 -7.4877 1.2396 21 6 -0.7011 -9.2348 2.5004 22 6 -2.2071 -9.2695 2.5470 23 7 -2.8357 -9.8936 3.5628 24 8 -2.8533 -8.7397 1.6680 25 6 1.2783 -8.3340 1.2666 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8887 32 1 0.8537 -5.0446 0.8913 33 1 1.7370 -9.3193 -1.3650 34 1 1.5798 -7.7015 -2.0965 35 1 -0.5690 -9.0179 -2.1384 36 1 -0.7033 -7.4881 -1.2373 37 1 -0.1938 -10.2310 0.0019 38 1 -1.7540 -9.3747 0.0010 39 1 -0.3218 -8.7309 3.3894 40 1 -0.3151 -10.2536 2.4677 41 1 -2.3189 -10.3208 4.2637 42 1 -3.8049 -9.9162 3.5925 43 1 1.5777 -7.6994 2.1007 44 1 1.7364 -9.3176 1.3704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339856411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:26 Heat of formation + Delta-G solvation = -168.783648 kcal Electronic energy + Delta-G solvation = -25388.285069 eV Core-core repulsion = 21658.231286 eV Total energy + Delta-G solvation = -3730.053782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83368 -39.12965 -38.27383 -37.07055 -36.49148 -34.60054 -34.27311 -34.17129 -32.70875 -29.67997 -28.50738 -25.81428 -25.36125 -23.58782 -22.49470 -21.60425 -20.74925 -19.85914 -18.80357 -18.54791 -18.08154 -17.68068 -17.23127 -17.17328 -16.49269 -16.26138 -16.03298 -15.64227 -15.40693 -14.93835 -14.75022 -14.56394 -14.42309 -14.09624 -13.98564 -13.57098 -13.47756 -13.20621 -13.04602 -12.99368 -12.89115 -12.78925 -12.64435 -12.62059 -12.19462 -11.99092 -11.89098 -11.78771 -11.51217 -11.38733 -11.28616 -11.10827 -10.77723 -10.60386 -10.51624 -9.86746 -8.24321 -6.36115 -0.77477 1.38766 1.39013 1.52951 1.65134 1.76462 2.38545 2.71702 2.78963 3.08942 3.13090 3.55054 3.76385 3.84004 3.91562 3.97953 4.06707 4.17523 4.33289 4.36421 4.49191 4.54808 4.61146 4.65554 4.71698 4.83786 4.90316 4.92482 4.93440 5.03478 5.07595 5.24180 5.33670 5.42648 5.45673 5.55359 5.58768 5.65824 5.76950 5.99767 6.16979 6.57697 6.79793 7.33529 7.47169 8.87530 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003278 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.641498 B = 8540.926349 C = 9711.453141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.104 4.104 11 C -0.614 4.614 12 S 2.627 3.373 13 O -0.981 6.981 14 O -0.985 6.985 15 N -0.995 5.995 16 C 0.116 3.884 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.093 4.093 20 H 0.059 0.941 21 C -0.135 4.135 22 C 0.509 3.491 23 N -0.843 5.843 24 O -0.590 6.590 25 C 0.120 3.880 26 H 0.265 0.735 27 H -0.001 1.001 28 H 0.000 1.000 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.418 0.582 42 H 0.403 0.597 43 H 0.091 0.909 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -26.991 6.299 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.744 4.744 12 S 2.722 3.278 13 O -0.971 6.971 14 O -0.975 6.975 15 N -0.833 5.833 16 C -0.008 4.008 17 C -0.174 4.174 18 C -0.149 4.149 19 C -0.113 4.113 20 H 0.077 0.923 21 C -0.175 4.175 22 C 0.295 3.705 23 N -0.407 5.407 24 O -0.471 6.471 25 C -0.005 4.005 26 H 0.074 0.926 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.250 0.750 42 H 0.233 0.767 43 H 0.109 0.891 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.902 -26.531 5.672 27.197 hybrid contribution -0.997 1.344 0.247 1.692 sum -2.899 -25.186 5.918 26.034 Atomic orbital electron populations 1.70098 1.07758 1.27865 1.51407 1.25987 0.95828 1.03419 0.94511 0.85381 0.79079 0.78573 0.77934 1.18603 1.20223 1.20113 1.21762 0.93761 0.92393 1.51016 0.92008 1.18956 0.94009 0.92082 0.95659 1.21300 0.98581 0.92403 1.02060 1.30622 1.16900 1.14531 1.12371 1.04414 0.75469 0.74897 0.72979 1.93516 1.71169 1.86306 1.46122 1.93521 1.71297 1.86314 1.46387 1.57606 1.70053 1.42509 1.13174 1.21633 0.95288 1.00109 0.83819 1.21932 0.94795 1.01127 0.99586 1.21589 1.01648 0.98694 0.92995 1.21307 0.94823 0.99981 0.95215 0.92276 1.21723 0.90443 1.05098 1.00214 1.21140 0.91910 0.76559 0.80857 1.43819 1.11713 1.58085 1.27060 1.90744 1.69337 1.47361 1.39648 1.21699 0.93895 1.00806 0.84055 0.92632 0.98253 0.98129 0.91379 0.91567 0.84561 0.84389 0.88861 0.89825 0.89285 0.93014 0.90205 0.91665 0.86282 0.85190 0.75048 0.76662 0.89053 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.10 -4.44 5.16 30.59 0.16 -4.28 16 11 C -0.61 -20.10 6.18 71.98 0.44 -19.66 16 12 S 2.63 78.36 5.41 -56.49 -0.31 78.05 16 13 O -0.98 -33.32 16.73 -127.65 -2.14 -35.45 16 14 O -0.98 -34.63 16.72 -127.65 -2.13 -36.76 16 15 N -1.00 -21.71 3.22 -513.08 -1.65 -23.36 16 16 C 0.12 2.18 6.31 86.36 0.55 2.72 16 17 C -0.14 -2.42 6.08 30.67 0.19 -2.23 16 18 C -0.11 -1.85 4.92 30.62 0.15 -1.70 16 19 C -0.09 -1.52 1.98 -10.72 -0.02 -1.54 16 20 H 0.06 1.31 7.96 -2.39 -0.02 1.30 16 21 C -0.13 -1.31 5.18 29.85 0.15 -1.16 16 22 C 0.51 7.82 7.81 87.66 0.68 8.51 16 23 N -0.84 -6.27 8.87 -173.53 -1.54 -7.81 16 24 O -0.59 -15.50 14.81 -3.04 -0.05 -15.54 16 25 C 0.12 1.99 5.60 86.36 0.48 2.48 16 26 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.71 7.10 -2.39 -0.02 1.69 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.37 5.94 -2.39 -0.01 1.35 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.13 0.43 8.14 -2.39 -0.02 0.42 16 41 H 0.42 0.11 8.83 -92.71 -0.82 -0.71 16 42 H 0.40 2.94 8.93 -92.71 -0.83 2.11 16 43 H 0.09 1.56 7.10 -2.39 -0.02 1.54 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -83.53 366.42 -2.51 -86.04 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -0.64 Total: 11.25 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.63 Total: -46.45 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.91 Total: -88.11 kcal Atomic # 8 Polarization: -83.45 SS G_CDS: -4.31 Total: -87.76 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 78.36 SS G_CDS: -0.31 Total: 78.05 kcal Total: -83.53 -2.51 -86.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.744 kcal (2) G-P(sol) polarization free energy of solvation -83.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds