Wall clock time and date at job start Tue Mar 31 2020 12:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93214 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48175 * 12 11 10 14 14 C 1.38274 * 120.13728 * 359.76763 * 13 12 11 15 15 C 1.50705 * 119.96893 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21352 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.49447 * 119.99601 * 179.97438 * 17 16 15 20 20 O 1.21349 * 120.00576 * 0.02562 * 19 17 16 21 21 N 1.34777 * 119.99601 * 179.97438 * 19 17 16 22 22 C 1.47025 * 125.65143 * 359.69379 * 21 19 17 23 23 C 1.54315 * 107.27641 * 180.97245 * 22 21 19 24 24 C 1.55153 * 102.86666 * 22.51929 * 23 22 21 25 25 C 1.47432 * 125.64716 * 180.02562 * 21 19 17 26 26 C 1.38123 * 120.07195 * 0.02562 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.96718 * 180.23027 * 12 11 10 30 30 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09001 * 109.87774 * 300.50973 * 22 21 19 35 35 H 1.08994 * 109.88069 * 61.67281 * 22 21 19 36 36 H 1.09007 * 110.92155 * 264.10842 * 23 22 21 37 37 H 1.08999 * 110.59090 * 140.78635 * 23 22 21 38 38 H 1.08994 * 111.00424 * 206.22941 * 24 23 22 39 39 H 1.09000 * 111.00220 * 82.38307 * 24 23 22 40 40 H 1.08999 * 110.36267 * 274.66769 * 25 21 19 41 41 H 1.09000 * 110.36611 * 36.88651 * 25 21 19 42 42 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8531 -4.7989 -0.1977 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4785 -3.7729 -0.4665 16 7 8.0828 -3.8566 0.8654 17 6 9.4223 -3.9319 0.9940 18 8 10.1277 -3.9310 0.0065 19 6 10.0389 -4.0167 2.3527 20 8 9.3335 -4.0181 3.3401 21 7 11.3783 -4.0926 2.4813 22 6 12.3460 -4.1079 1.3745 23 6 13.7527 -4.2287 1.9972 24 6 13.4625 -4.8521 3.3880 25 6 12.1156 -4.1810 3.7550 26 6 5.3550 -2.4724 -0.2262 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2704 -5.7082 -0.1864 30 1 5.7198 -5.8205 -0.4034 31 1 7.7495 -4.6564 -1.0447 32 1 7.8422 -2.8802 -0.9752 33 1 7.5190 -3.8577 1.6547 34 1 12.1519 -4.9609 0.7243 35 1 12.2728 -3.1811 0.8054 36 1 14.2170 -3.2482 2.1034 37 1 14.3803 -4.8911 1.4010 38 1 14.2395 -4.5868 4.1049 39 1 13.3526 -5.9341 3.3159 40 1 12.2872 -3.1852 4.1638 41 1 11.5664 -4.7943 4.4694 42 1 5.9409 -1.5652 -0.2380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344775753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:14 Heat of formation + Delta-G solvation = -63.584938 kcal Electronic energy + Delta-G solvation = -25376.819772 eV Core-core repulsion = 21515.883797 eV Total energy + Delta-G solvation = -3860.935975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91525 -39.46134 -38.85971 -37.70627 -37.02268 -34.77198 -32.45263 -32.02212 -30.99702 -29.51234 -29.43057 -26.83296 -25.37251 -24.75340 -22.46394 -21.84864 -21.56727 -20.78227 -20.01995 -18.25374 -17.73996 -17.21799 -17.07749 -16.79580 -15.85051 -15.66283 -15.32277 -14.97266 -14.66433 -14.24522 -14.01047 -13.93766 -13.84516 -13.66503 -13.49385 -13.25726 -12.81626 -12.68570 -12.62653 -12.22984 -12.09285 -12.00450 -11.69058 -11.49317 -11.40980 -11.18482 -10.97663 -10.89866 -10.78998 -10.21974 -9.72957 -9.47902 -9.30782 -9.04550 -8.93724 -8.37099 -7.50415 -6.47086 -4.14396 1.29852 1.67109 2.11599 2.27444 3.07749 3.18875 3.22809 3.37039 3.38245 4.06780 4.17305 4.19331 4.33049 4.46088 4.47806 4.61339 4.87967 4.92876 4.99901 5.05988 5.24274 5.30788 5.34038 5.41176 5.50793 5.53982 5.56159 5.67526 5.70445 5.73470 5.84424 5.98303 6.11459 6.15687 6.38159 6.64392 6.85691 6.95812 7.06764 7.14381 7.18479 7.47312 7.55538 7.71747 7.87714 7.96346 8.87707 9.48328 10.60257 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.002436 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.870680 B =11490.585129 C =12129.239476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.209 4.209 12 C -0.077 4.077 13 C -0.184 4.184 14 C -0.079 4.079 15 C 0.167 3.833 16 N -0.688 5.688 17 C 0.507 3.493 18 O -0.523 6.523 19 C 0.520 3.480 20 O -0.518 6.518 21 N -0.595 5.595 22 C 0.106 3.894 23 C -0.136 4.136 24 C -0.134 4.134 25 C 0.102 3.898 26 C -0.169 4.169 27 H 0.280 0.720 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.832 -9.738 3.636 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.229 4.229 12 C -0.095 4.095 13 C -0.203 4.203 14 C -0.080 4.080 15 C 0.045 3.955 16 N -0.341 5.341 17 C 0.287 3.713 18 O -0.399 6.399 19 C 0.303 3.697 20 O -0.394 6.394 21 N -0.330 5.330 22 C -0.016 4.016 23 C -0.174 4.174 24 C -0.172 4.172 25 C -0.019 4.019 26 C -0.189 4.189 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.253 0.747 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 24.723 -9.344 3.454 26.655 hybrid contribution -0.284 0.680 0.318 0.803 sum 24.439 -8.664 3.772 26.202 Atomic orbital electron populations 1.69643 1.05577 1.28600 1.47609 1.24474 0.95039 0.98888 0.95549 0.86178 0.80347 0.81370 0.79005 1.19831 1.20721 1.18337 1.20763 0.76764 0.96676 1.52461 0.87565 1.83575 1.22711 1.25535 1.80151 1.19047 0.91532 0.85667 0.93362 1.21386 1.01374 0.91911 1.08213 1.20809 0.94131 0.96893 0.97716 1.20550 0.93930 0.96680 1.09189 1.19192 0.93001 0.93167 1.02632 1.20301 0.89290 1.03009 0.82884 1.45978 1.05775 1.71231 1.11093 1.19926 0.83486 0.78703 0.89183 1.90739 1.61233 1.48853 1.39112 1.19933 0.81533 0.78260 0.89928 1.90793 1.60464 1.48637 1.39489 1.48276 1.04673 1.70798 1.09287 1.22203 0.86892 1.03717 0.88803 1.22741 0.96173 1.02066 0.96437 1.22802 0.96308 1.00728 0.97371 1.22367 0.92029 1.01400 0.86144 1.20077 0.92062 0.97194 1.09589 0.90960 0.84752 0.86865 0.87202 0.90192 0.90198 0.74740 0.90219 0.90274 0.90360 0.89703 0.89460 0.90371 0.90791 0.89880 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 13.96 55.48 0.77 -24.23 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.45 28.62 -169.99 -4.86 16.59 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -10.81 9.95 30.89 0.31 -10.50 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 9 O -0.21 -5.53 8.59 0.05 0.00 -5.53 16 10 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 11 C -0.21 -4.32 9.17 -39.40 -0.36 -4.68 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.18 -2.87 9.70 -39.54 -0.38 -3.25 16 14 C -0.08 -1.25 5.25 -104.65 -0.55 -1.80 16 15 C 0.17 2.23 5.80 -5.19 -0.03 2.20 16 16 N -0.69 -9.14 5.54 -61.91 -0.34 -9.48 16 17 C 0.51 6.81 7.86 -11.59 -0.09 6.72 16 18 O -0.52 -7.49 14.12 5.50 0.08 -7.41 16 19 C 0.52 6.84 7.91 -11.59 -0.09 6.75 16 20 O -0.52 -8.00 16.73 5.50 0.09 -7.91 16 21 N -0.60 -6.19 3.33 -171.04 -0.57 -6.76 16 22 C 0.11 0.89 5.48 -3.07 -0.02 0.87 16 23 C -0.14 -0.70 6.95 -24.90 -0.17 -0.87 16 24 C -0.13 -0.66 7.08 -24.59 -0.17 -0.84 16 25 C 0.10 0.80 6.91 -2.54 -0.02 0.78 16 26 C -0.17 -3.19 9.65 -39.39 -0.38 -3.57 16 27 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.13 2.92 5.64 -52.48 -0.30 2.63 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.42 5.59 7.94 -40.82 -0.32 5.26 16 34 H 0.08 0.71 7.59 -51.93 -0.39 0.32 16 35 H 0.08 0.72 7.68 -51.93 -0.40 0.33 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -31.04 357.78 -7.63 -38.67 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.47 Total: 5.69 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.71 Total: -5.02 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.14 Total: -40.47 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.04 -7.63 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344775753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.919 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds