Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93214 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48175 * 12 11 10 14 14 C 1.38274 * 120.13728 * 359.76763 * 13 12 11 15 15 C 1.50705 * 119.96893 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21352 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.49447 * 119.99601 * 179.97438 * 17 16 15 20 20 O 1.21349 * 120.00576 * 0.02562 * 19 17 16 21 21 N 1.34777 * 119.99601 * 179.97438 * 19 17 16 22 22 C 1.47025 * 125.65143 * 359.69379 * 21 19 17 23 23 C 1.54315 * 107.27641 * 180.97245 * 22 21 19 24 24 C 1.55153 * 102.86666 * 22.51929 * 23 22 21 25 25 C 1.47432 * 125.64716 * 180.02562 * 21 19 17 26 26 C 1.38123 * 120.07195 * 0.02562 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.96718 * 180.23027 * 12 11 10 30 30 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09001 * 109.87774 * 300.50973 * 22 21 19 35 35 H 1.08994 * 109.88069 * 61.67281 * 22 21 19 36 36 H 1.09007 * 110.92155 * 264.10842 * 23 22 21 37 37 H 1.08999 * 110.59090 * 140.78635 * 23 22 21 38 38 H 1.08994 * 111.00424 * 206.22941 * 24 23 22 39 39 H 1.09000 * 111.00220 * 82.38307 * 24 23 22 40 40 H 1.08999 * 110.36267 * 274.66769 * 25 21 19 41 41 H 1.09000 * 110.36611 * 36.88651 * 25 21 19 42 42 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8531 -4.7989 -0.1977 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4785 -3.7729 -0.4665 16 7 8.0828 -3.8566 0.8654 17 6 9.4223 -3.9319 0.9940 18 8 10.1277 -3.9310 0.0065 19 6 10.0389 -4.0167 2.3527 20 8 9.3335 -4.0181 3.3401 21 7 11.3783 -4.0926 2.4813 22 6 12.3460 -4.1079 1.3745 23 6 13.7527 -4.2287 1.9972 24 6 13.4625 -4.8521 3.3880 25 6 12.1156 -4.1810 3.7550 26 6 5.3550 -2.4724 -0.2262 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2704 -5.7082 -0.1864 30 1 5.7198 -5.8205 -0.4034 31 1 7.7495 -4.6564 -1.0447 32 1 7.8422 -2.8802 -0.9752 33 1 7.5190 -3.8577 1.6547 34 1 12.1519 -4.9609 0.7243 35 1 12.2728 -3.1811 0.8054 36 1 14.2170 -3.2482 2.1034 37 1 14.3803 -4.8911 1.4010 38 1 14.2395 -4.5868 4.1049 39 1 13.3526 -5.9341 3.3159 40 1 12.2872 -3.1852 4.1638 41 1 11.5664 -4.7943 4.4694 42 1 5.9409 -1.5652 -0.2380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344775753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -84.432512 kcal Electronic energy + Delta-G solvation = -25377.723791 eV Core-core repulsion = 21515.883797 eV Total energy + Delta-G solvation = -3861.839994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89173 -40.98266 -39.91356 -38.60272 -38.55183 -35.96031 -34.46983 -32.73162 -32.35690 -31.03737 -30.07154 -28.04126 -27.19808 -25.80495 -23.49100 -23.18724 -22.27494 -22.10135 -21.02709 -19.73981 -19.25757 -18.53597 -18.15844 -17.64743 -16.95951 -16.83637 -16.76094 -16.32887 -15.93944 -15.68643 -15.59153 -15.13044 -14.89557 -14.56226 -14.46932 -14.26654 -14.20502 -14.04051 -13.88758 -13.46186 -13.38745 -13.14282 -12.84820 -12.59883 -12.49650 -12.41845 -12.17277 -12.08712 -11.96454 -11.59945 -11.34722 -10.94043 -10.76941 -10.36966 -9.87821 -9.82644 -9.15133 -8.51616 -6.24396 0.26844 0.27121 0.62055 1.27073 1.30449 1.34533 1.50358 2.05238 2.26260 2.41793 2.76803 2.96479 3.09929 3.29052 3.64755 3.68220 3.71678 4.02887 4.05665 4.23209 4.30060 4.36992 4.44858 4.45952 4.57856 4.64603 4.66545 4.86635 4.88626 4.89713 4.96428 5.04886 5.11784 5.15626 5.16936 5.34233 5.34932 5.58739 5.65387 5.72236 5.86762 5.93553 6.15591 6.18186 6.54833 6.82732 6.84821 7.56233 8.59769 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.002436 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.870680 B =11490.585129 C =12129.239476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.399 4.399 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.118 3.882 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.067 4.067 15 C 0.173 3.827 16 N -0.688 5.688 17 C 0.510 3.490 18 O -0.531 6.531 19 C 0.514 3.486 20 O -0.551 6.551 21 N -0.591 5.591 22 C 0.100 3.900 23 C -0.127 4.127 24 C -0.123 4.123 25 C 0.092 3.908 26 C -0.169 4.169 27 H 0.285 0.715 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.754 -11.223 3.482 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.101 0.899 9 O -0.152 6.152 10 C 0.069 3.931 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.176 4.176 14 C -0.067 4.067 15 C 0.051 3.949 16 N -0.340 5.340 17 C 0.290 3.710 18 O -0.409 6.409 19 C 0.297 3.703 20 O -0.430 6.430 21 N -0.325 5.325 22 C -0.022 4.022 23 C -0.165 4.165 24 C -0.161 4.161 25 C -0.029 4.029 26 C -0.189 4.189 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 28.711 -10.870 3.288 30.876 hybrid contribution -1.246 0.821 0.341 1.530 sum 27.465 -10.049 3.629 29.470 Atomic orbital electron populations 1.69725 1.06833 1.29583 1.50051 1.25258 0.95874 1.02093 0.95587 0.85242 0.78764 0.77603 0.79271 1.19036 1.19261 1.18890 1.20708 0.78012 0.96164 1.52618 0.89884 1.83520 1.21304 1.27356 1.83060 1.19583 0.92975 0.85274 0.95292 1.21425 1.00499 0.93290 1.09349 1.21160 0.95255 0.96454 0.96413 1.21072 0.93209 0.98280 1.05055 1.19453 0.94590 0.92094 1.00584 1.20290 0.87099 1.04302 0.83183 1.45918 1.05861 1.71252 1.10969 1.19985 0.83345 0.78335 0.89295 1.90736 1.61399 1.49345 1.39399 1.19899 0.82460 0.78582 0.89336 1.90775 1.61368 1.50714 1.40112 1.48497 1.04196 1.68693 1.11111 1.22366 0.88388 1.02964 0.88478 1.22752 0.94122 1.03242 0.96359 1.22810 0.94987 1.00586 0.97711 1.22642 0.93172 1.02100 0.85005 1.20308 0.90672 0.98939 1.08965 0.90568 0.87128 0.83717 0.83072 0.88054 0.89859 0.74796 0.90782 0.91190 0.89265 0.87863 0.87015 0.90094 0.90122 0.90712 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.96 21.61 0.30 -54.58 16 2 C 0.01 0.61 5.49 84.83 0.47 1.07 16 3 Si 0.97 45.57 28.62 68.60 1.96 47.53 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.40 -23.31 9.95 67.92 0.68 -22.64 16 8 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 9 O -0.24 -13.17 8.59 -22.74 -0.20 -13.36 16 10 C 0.12 5.36 6.65 22.58 0.15 5.51 16 11 C -0.23 -9.54 9.17 22.39 0.21 -9.33 16 12 C -0.07 -2.39 10.04 22.25 0.22 -2.17 16 13 C -0.16 -4.29 9.70 22.30 0.22 -4.07 16 14 C -0.07 -1.93 5.25 -19.88 -0.10 -2.03 16 15 C 0.17 4.06 5.80 85.64 0.50 4.56 16 16 N -0.69 -16.72 5.54 -468.13 -2.59 -19.32 16 17 C 0.51 12.83 7.86 87.27 0.69 13.51 16 18 O -0.53 -14.14 14.12 -3.25 -0.05 -14.19 16 19 C 0.51 13.00 7.91 87.27 0.69 13.70 16 20 O -0.55 -16.78 16.73 -3.24 -0.05 -16.84 16 21 N -0.59 -11.45 3.33 -813.41 -2.71 -14.15 16 22 C 0.10 1.47 5.48 86.73 0.48 1.95 16 23 C -0.13 -0.89 6.95 31.78 0.22 -0.67 16 24 C -0.12 -0.83 7.08 31.98 0.23 -0.60 16 25 C 0.09 1.26 6.91 86.85 0.60 1.86 16 26 C -0.17 -6.24 9.65 22.39 0.22 -6.03 16 27 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 29 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.10 2.04 8.09 -2.38 -0.02 2.02 16 32 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.42 10.43 7.94 -92.71 -0.74 9.70 16 34 H 0.07 1.19 7.59 -2.39 -0.02 1.17 16 35 H 0.07 1.17 7.68 -2.39 -0.02 1.15 16 36 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.16 8.03 -2.39 -0.02 1.14 16 42 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -71.11 357.78 2.43 -68.67 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.32 Total: 21.61 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.44 Total: -5.38 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -5.00 Total: -88.05 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.30 Total: -44.39 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.96 Total: 47.53 kcal Total: -71.11 2.43 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344775753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds