Wall clock time and date at job start Tue Mar 31 2020 13:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30436 * 125.99264 * 2 1 4 4 N 1.39928 * 108.91733 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.73992 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47100 * 94.98176 * 5 4 3 7 7 C 1.53007 * 109.46971 * 214.98229 * 5 4 3 8 8 C 1.34220 * 108.51370 * 359.77136 * 4 3 2 9 9 C 1.38120 * 107.40843 * 0.36695 * 8 4 3 10 10 C 1.47288 * 126.42495 * 179.89955 * 9 8 4 11 11 O 1.21533 * 119.99807 * 179.68525 * 10 9 8 12 12 O 1.34750 * 120.00161 * 359.95763 * 10 9 8 13 13 C 1.45201 * 117.00036 * 179.72475 * 12 10 9 14 14 H 1.08997 * 109.47402 * 329.99898 * 13 12 10 15 15 C 1.50696 * 109.47013 * 90.00348 * 13 12 10 16 16 H 1.08001 * 119.99980 * 239.99920 * 15 13 12 17 17 C 1.37882 * 120.00125 * 59.99726 * 15 13 12 18 18 N 1.31515 * 119.99987 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99972 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47106 * 89.99577 * 19 17 15 21 21 H 1.48495 * 109.47338 * 209.99783 * 19 17 15 22 22 H 1.48499 * 109.47048 * 329.99817 * 19 17 15 23 23 C 1.50699 * 109.47198 * 210.00169 * 13 12 10 24 24 C 1.34512 * 125.79147 * 145.00218 * 23 13 12 25 25 C 1.41379 * 106.84241 * 180.02562 * 24 23 13 26 26 C 1.34505 * 106.84250 * 359.97438 * 25 24 23 27 27 O 1.34299 * 125.78922 * 324.69625 * 23 13 12 28 28 H 1.09007 * 109.46812 * 269.95339 * 1 2 3 29 29 H 1.08994 * 109.47031 * 29.95444 * 1 2 3 30 30 H 1.08996 * 109.47027 * 149.95653 * 1 2 3 31 31 H 1.09008 * 109.47244 * 334.97848 * 5 4 3 32 32 H 1.08995 * 109.47089 * 59.99864 * 6 5 4 33 33 H 1.09003 * 109.46955 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46877 * 299.99542 * 6 5 4 35 35 H 1.08999 * 109.47037 * 60.00254 * 7 5 4 36 36 H 1.09003 * 109.46653 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46681 * 299.99719 * 7 5 4 38 38 H 1.08003 * 126.29376 * 180.22542 * 8 4 3 39 39 H 0.96997 * 119.99821 * 180.02562 * 18 17 15 40 40 H 1.08005 * 126.57814 * 0.03184 * 24 23 13 41 41 H 1.08006 * 126.57828 * 179.97438 * 25 24 23 42 42 H 1.08006 * 125.79259 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7783 1.5299 -0.0002 6 6 5.2607 1.7373 1.4368 7 6 5.8988 0.8971 -0.8280 8 6 3.6449 -0.6973 0.0041 9 6 2.3378 -1.1435 -0.0007 10 6 1.8930 -2.5476 -0.0002 11 8 0.7061 -2.8090 0.0009 12 8 2.8019 -3.5423 0.0046 13 6 2.2916 -4.9017 0.0110 14 1 1.3307 -4.9266 0.5249 15 6 2.1152 -5.3787 -1.4076 16 1 1.1386 -5.6770 -1.7595 17 6 3.2004 -5.4343 -2.2562 18 7 3.0464 -5.8501 -3.4943 19 14 4.8896 -4.9191 -1.6473 20 1 5.5903 -6.0970 -1.0759 21 1 5.6796 -4.3749 -2.7808 22 1 4.7416 -3.8757 -0.6011 23 6 3.2669 -5.8011 0.7258 24 6 2.9453 -6.8569 1.4946 25 6 4.1602 -7.4079 1.9628 26 6 5.1516 -6.6562 1.4517 27 8 4.6048 -5.6878 0.6985 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 4.5049 2.4918 -0.4342 32 1 5.5341 0.7756 1.8706 33 1 6.1288 2.3965 1.4371 34 1 4.4624 2.1882 2.0264 35 1 5.5551 0.7493 -1.8518 36 1 6.7673 1.5557 -0.8273 37 1 6.1722 -0.0647 -0.3940 38 1 4.5312 -1.3145 0.0084 39 1 3.8099 -5.8896 -4.0912 40 1 1.9499 -7.2151 1.7124 41 1 4.2710 -8.2675 2.6073 42 1 6.2083 -6.8084 1.6152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345976955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:33 Heat of formation + Delta-G solvation = 15.196910 kcal Electronic energy + Delta-G solvation = -27325.814839 eV Core-core repulsion = 23468.295101 eV Total energy + Delta-G solvation = -3857.519738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94280 -41.30342 -38.94296 -36.18245 -35.37845 -32.96346 -32.34163 -31.66738 -30.77460 -29.90310 -27.74393 -27.37458 -26.81238 -24.08561 -22.77210 -21.42345 -20.91216 -20.09774 -19.74774 -19.35740 -17.85021 -17.09720 -16.77796 -16.01034 -15.67871 -15.50652 -15.10051 -14.85211 -14.55208 -14.14473 -13.92129 -13.52038 -13.39420 -13.09761 -12.92794 -12.69324 -12.44267 -12.34573 -12.30097 -12.20933 -11.93538 -11.76840 -11.60345 -11.45423 -11.41586 -11.14946 -10.70137 -10.68072 -10.20305 -9.65761 -9.33826 -9.20789 -9.18147 -9.03325 -8.67544 -8.46526 -7.68068 -6.32255 -4.44920 1.71563 2.32509 2.37570 2.42719 3.11241 3.26200 3.39933 3.48523 3.85957 3.92709 4.13199 4.22726 4.38338 4.56345 4.73813 4.77420 4.86874 5.05601 5.16316 5.17607 5.36706 5.44109 5.46278 5.50142 5.64110 5.70269 5.72006 5.80879 5.81824 5.90061 6.05286 6.22993 6.25783 6.31806 6.47466 6.60069 6.73540 6.85299 6.96037 7.13504 7.25451 7.56402 7.76156 7.86553 8.18790 8.68001 8.87057 9.27895 10.75142 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.004932 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.510106 B = 5676.087043 C = 6115.846569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 N -0.308 5.308 4 N -0.359 5.359 5 C 0.153 3.847 6 C -0.166 4.166 7 C -0.171 4.171 8 C 0.122 3.878 9 C -0.267 4.267 10 C 0.539 3.461 11 O -0.520 6.520 12 O -0.358 6.358 13 C 0.252 3.748 14 H 0.092 0.908 15 C -0.533 4.533 16 H 0.091 0.909 17 C 0.087 3.913 18 N -0.868 5.868 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.222 1.222 23 C 0.036 3.964 24 C -0.230 4.230 25 C -0.204 4.204 26 C -0.078 4.078 27 O -0.165 6.165 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.185 0.815 39 H 0.270 0.730 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 11.615 9.404 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 N -0.130 5.130 4 N -0.138 5.138 5 C 0.052 3.948 6 C -0.224 4.224 7 C -0.229 4.229 8 C -0.029 4.029 9 C -0.280 4.280 10 C 0.384 3.616 11 O -0.410 6.410 12 O -0.275 6.275 13 C 0.199 3.801 14 H 0.109 0.891 15 C -0.568 4.568 16 H 0.109 0.891 17 C -0.121 4.121 18 N -0.503 5.503 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.229 1.229 22 H -0.147 1.147 23 C -0.014 4.014 24 C -0.249 4.249 25 C -0.223 4.223 26 C -0.144 4.144 27 O -0.063 6.063 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.202 0.798 39 H 0.079 0.921 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.903 13.039 9.070 17.318 hybrid contribution 1.056 -1.227 0.118 1.624 sum 7.959 11.812 9.187 16.949 Atomic orbital electron populations 1.20354 0.85674 1.04152 1.03363 1.22454 0.97190 0.88585 0.95236 1.77089 0.86009 1.22552 1.27304 1.48587 1.05577 1.04530 1.55144 1.21350 0.82084 0.93659 0.97720 1.22254 1.02078 1.03136 0.94897 1.22267 0.97576 1.02299 1.00723 1.23183 0.99494 0.84871 0.95315 1.19678 0.92249 0.92462 1.23584 1.19783 0.84465 0.84861 0.72485 1.90701 1.17944 1.84802 1.47589 1.86979 1.40000 1.17743 1.82779 1.19242 0.89461 0.74679 0.96693 0.89064 1.21113 0.97843 1.45453 0.92400 0.89141 1.25193 1.00328 0.92145 0.94475 1.69932 1.32112 1.42651 1.05593 0.86530 0.82531 0.81140 0.77543 1.20219 1.22936 1.14710 1.23116 0.80948 0.99878 0.97478 1.21226 0.99323 0.99638 1.04685 1.21621 0.92467 1.02643 1.05614 1.23767 0.98995 0.93239 0.98443 1.84473 1.20570 1.46685 1.54565 0.90368 0.91227 0.88318 0.87698 0.91639 0.90356 0.91521 0.91087 0.89750 0.91140 0.79763 0.92066 0.83910 0.84262 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.92 36.01 0.36 -0.78 16 2 C 0.13 2.30 7.27 -82.00 -0.60 1.70 16 3 N -0.31 -5.01 12.50 33.90 0.42 -4.59 16 4 N -0.36 -5.12 3.49 -54.30 -0.19 -5.31 16 5 C 0.15 1.50 3.91 -67.93 -0.27 1.23 16 6 C -0.17 -1.34 9.52 37.16 0.35 -0.99 16 7 C -0.17 -1.42 8.83 37.16 0.33 -1.10 16 8 C 0.12 1.97 10.43 -16.55 -0.17 1.79 16 9 C -0.27 -5.08 6.12 -105.08 -0.64 -5.73 16 10 C 0.54 12.06 7.92 34.41 0.27 12.33 16 11 O -0.52 -12.35 14.18 -19.29 -0.27 -12.62 16 12 O -0.36 -8.45 6.52 -43.40 -0.28 -8.73 16 13 C 0.25 6.19 2.55 -29.04 -0.07 6.12 16 14 H 0.09 2.19 7.16 -51.93 -0.37 1.82 16 15 C -0.53 -15.15 9.52 -34.44 -0.33 -15.48 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.09 2.49 5.45 -17.82 -0.10 2.40 16 18 N -0.87 -26.20 13.96 55.43 0.77 -25.42 16 19 Si 0.89 22.05 22.92 -169.99 -3.90 18.15 16 20 H -0.27 -6.72 6.02 56.52 0.34 -6.38 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.22 -5.17 4.91 56.52 0.28 -4.89 16 23 C 0.04 0.83 5.34 -35.63 -0.19 0.64 16 24 C -0.23 -4.65 10.81 -39.70 -0.43 -5.08 16 25 C -0.20 -3.62 10.91 -39.71 -0.43 -4.05 16 26 C -0.08 -1.43 11.72 29.41 0.34 -1.08 16 27 O -0.17 -3.67 4.85 2.19 0.01 -3.66 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.64 6.56 -51.93 -0.34 1.30 16 31 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.61 7.13 -51.93 -0.37 0.24 16 38 H 0.19 2.68 7.24 -52.48 -0.38 2.30 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.14 2.60 8.06 -52.48 -0.42 2.17 16 41 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 42 H 0.19 2.59 8.06 -52.48 -0.42 2.16 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -34.26 350.43 -5.58 -39.84 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.86 Total: 5.12 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.57 Total: -8.07 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 1.01 Total: -35.32 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.55 Total: -25.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -3.90 Total: 18.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.26 -5.58 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.042 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds