Wall clock time and date at job start Tue Mar 31 2020 13:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30436 * 125.99264 * 2 1 4 4 N 1.39928 * 108.91733 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.73992 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47100 * 94.98176 * 5 4 3 7 7 C 1.53007 * 109.46971 * 214.98229 * 5 4 3 8 8 C 1.34220 * 108.51370 * 359.77136 * 4 3 2 9 9 C 1.38120 * 107.40843 * 0.36695 * 8 4 3 10 10 C 1.47288 * 126.42495 * 179.89955 * 9 8 4 11 11 O 1.21533 * 119.99807 * 179.68525 * 10 9 8 12 12 O 1.34750 * 120.00161 * 359.95763 * 10 9 8 13 13 C 1.45201 * 117.00036 * 179.72475 * 12 10 9 14 14 H 1.08997 * 109.47402 * 329.99898 * 13 12 10 15 15 C 1.50696 * 109.47013 * 90.00348 * 13 12 10 16 16 H 1.08001 * 119.99980 * 239.99920 * 15 13 12 17 17 C 1.37882 * 120.00125 * 59.99726 * 15 13 12 18 18 N 1.31515 * 119.99987 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99972 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47106 * 89.99577 * 19 17 15 21 21 H 1.48495 * 109.47338 * 209.99783 * 19 17 15 22 22 H 1.48499 * 109.47048 * 329.99817 * 19 17 15 23 23 C 1.50699 * 109.47198 * 210.00169 * 13 12 10 24 24 C 1.34512 * 125.79147 * 145.00218 * 23 13 12 25 25 C 1.41379 * 106.84241 * 180.02562 * 24 23 13 26 26 C 1.34505 * 106.84250 * 359.97438 * 25 24 23 27 27 O 1.34299 * 125.78922 * 324.69625 * 23 13 12 28 28 H 1.09007 * 109.46812 * 269.95339 * 1 2 3 29 29 H 1.08994 * 109.47031 * 29.95444 * 1 2 3 30 30 H 1.08996 * 109.47027 * 149.95653 * 1 2 3 31 31 H 1.09008 * 109.47244 * 334.97848 * 5 4 3 32 32 H 1.08995 * 109.47089 * 59.99864 * 6 5 4 33 33 H 1.09003 * 109.46955 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46877 * 299.99542 * 6 5 4 35 35 H 1.08999 * 109.47037 * 60.00254 * 7 5 4 36 36 H 1.09003 * 109.46653 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46681 * 299.99719 * 7 5 4 38 38 H 1.08003 * 126.29376 * 180.22542 * 8 4 3 39 39 H 0.96997 * 119.99821 * 180.02562 * 18 17 15 40 40 H 1.08005 * 126.57814 * 0.03184 * 24 23 13 41 41 H 1.08006 * 126.57828 * 179.97438 * 25 24 23 42 42 H 1.08006 * 125.79259 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7783 1.5299 -0.0002 6 6 5.2607 1.7373 1.4368 7 6 5.8988 0.8971 -0.8280 8 6 3.6449 -0.6973 0.0041 9 6 2.3378 -1.1435 -0.0007 10 6 1.8930 -2.5476 -0.0002 11 8 0.7061 -2.8090 0.0009 12 8 2.8019 -3.5423 0.0046 13 6 2.2916 -4.9017 0.0110 14 1 1.3307 -4.9266 0.5249 15 6 2.1152 -5.3787 -1.4076 16 1 1.1386 -5.6770 -1.7595 17 6 3.2004 -5.4343 -2.2562 18 7 3.0464 -5.8501 -3.4943 19 14 4.8896 -4.9191 -1.6473 20 1 5.5903 -6.0970 -1.0759 21 1 5.6796 -4.3749 -2.7808 22 1 4.7416 -3.8757 -0.6011 23 6 3.2669 -5.8011 0.7258 24 6 2.9453 -6.8569 1.4946 25 6 4.1602 -7.4079 1.9628 26 6 5.1516 -6.6562 1.4517 27 8 4.6048 -5.6878 0.6985 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 4.5049 2.4918 -0.4342 32 1 5.5341 0.7756 1.8706 33 1 6.1288 2.3965 1.4371 34 1 4.4624 2.1882 2.0264 35 1 5.5551 0.7493 -1.8518 36 1 6.7673 1.5557 -0.8273 37 1 6.1722 -0.0647 -0.3940 38 1 4.5312 -1.3145 0.0084 39 1 3.8099 -5.8896 -4.0912 40 1 1.9499 -7.2151 1.7124 41 1 4.2710 -8.2675 2.6073 42 1 6.2083 -6.8084 1.6152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345976955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:32 Heat of formation + Delta-G solvation = -6.737912 kcal Electronic energy + Delta-G solvation = -27326.766004 eV Core-core repulsion = 23468.295101 eV Total energy + Delta-G solvation = -3858.470903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.51271 -42.57762 -40.71103 -37.53298 -36.79596 -35.03230 -33.93170 -32.81715 -32.47155 -31.34296 -28.78365 -28.54461 -28.20660 -25.63214 -24.45651 -22.91626 -22.29598 -21.46430 -21.25886 -20.66250 -19.54247 -18.62020 -18.58118 -17.68127 -17.29666 -16.83360 -16.55445 -16.39085 -15.87808 -15.52962 -15.25014 -15.09306 -14.93858 -14.36098 -14.14008 -13.94180 -13.83827 -13.51907 -13.42386 -13.38054 -13.19805 -13.12922 -13.07519 -12.94918 -12.64780 -12.35307 -12.26190 -12.08648 -11.92759 -11.63368 -11.19650 -11.07244 -10.85024 -10.51664 -10.41728 -9.80730 -9.28119 -8.50792 -6.69828 0.35926 0.82571 0.97363 1.23481 1.27917 1.40233 1.56745 1.79747 2.12528 2.26808 2.36553 2.48903 2.95108 3.24385 3.63965 3.74842 3.86890 3.93018 4.04555 4.12964 4.22912 4.28325 4.36981 4.43335 4.59570 4.63275 4.66922 4.74469 4.76206 4.78484 4.92499 4.96169 4.97326 5.09010 5.13864 5.15440 5.19165 5.29469 5.43242 5.70603 5.77800 5.83694 6.02835 6.29854 6.40132 6.47025 7.01611 7.13391 8.60795 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.004932 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.510106 B = 5676.087043 C = 6115.846569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.124 3.876 3 N -0.313 5.313 4 N -0.345 5.345 5 C 0.141 3.859 6 C -0.159 4.159 7 C -0.169 4.169 8 C 0.137 3.863 9 C -0.306 4.306 10 C 0.532 3.468 11 O -0.547 6.547 12 O -0.358 6.358 13 C 0.263 3.737 14 H 0.082 0.918 15 C -0.549 4.549 16 H 0.043 0.957 17 C 0.037 3.963 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.301 1.301 22 H -0.205 1.205 23 C -0.007 4.007 24 C -0.223 4.223 25 C -0.204 4.204 26 C -0.071 4.071 27 O -0.185 6.185 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.203 0.797 39 H 0.273 0.727 40 H 0.154 0.846 41 H 0.180 0.820 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.355 12.851 11.614 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 N -0.134 5.134 4 N -0.123 5.123 5 C 0.042 3.958 6 C -0.217 4.217 7 C -0.227 4.227 8 C -0.017 4.017 9 C -0.319 4.319 10 C 0.379 3.621 11 O -0.439 6.439 12 O -0.275 6.275 13 C 0.210 3.790 14 H 0.100 0.900 15 C -0.585 4.585 16 H 0.061 0.939 17 C -0.166 4.166 18 N -0.555 5.555 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.230 1.230 22 H -0.129 1.129 23 C -0.057 4.057 24 C -0.242 4.242 25 C -0.223 4.223 26 C -0.137 4.137 27 O -0.083 6.083 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.220 0.780 39 H 0.082 0.918 40 H 0.172 0.828 41 H 0.198 0.802 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.382 14.310 11.296 20.980 hybrid contribution -0.045 -1.569 -0.469 1.639 sum 10.337 12.741 10.827 19.657 Atomic orbital electron populations 1.20355 0.84704 1.03994 1.04213 1.22727 0.98163 0.88208 0.95187 1.77059 0.86952 1.22106 1.27304 1.49092 1.06047 1.04495 1.52673 1.21894 0.80937 0.93440 0.99540 1.22239 1.02840 1.03603 0.93040 1.22314 0.97951 1.03001 0.99399 1.23351 0.98877 0.85846 0.93601 1.19616 0.94209 0.90809 1.27283 1.20399 0.84128 0.85915 0.71660 1.90678 1.18923 1.85298 1.48991 1.86911 1.39993 1.17406 1.83166 1.18818 0.90599 0.75127 0.94496 0.89998 1.21178 0.96079 1.46088 0.95135 0.93869 1.26051 1.04348 0.91918 0.94310 1.70050 1.33398 1.44994 1.07038 0.85569 0.77406 0.81558 0.77221 1.19191 1.23001 1.12935 1.22666 0.81498 1.01056 1.00471 1.21663 1.01219 0.98291 1.03060 1.22058 0.90766 1.03640 1.05796 1.24808 1.01215 0.91309 0.96355 1.84347 1.19940 1.48285 1.55766 0.88996 0.88991 0.90720 0.86542 0.91988 0.87097 0.92675 0.92451 0.86445 0.91232 0.77999 0.91785 0.82826 0.80228 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.23 9.92 71.24 0.71 -1.53 16 2 C 0.12 4.29 7.27 43.53 0.32 4.60 16 3 N -0.31 -9.79 12.50 -46.65 -0.58 -10.37 16 4 N -0.35 -9.19 3.49 -325.70 -1.14 -10.33 16 5 C 0.14 2.33 3.91 44.99 0.18 2.51 16 6 C -0.16 -2.03 9.52 71.98 0.69 -1.35 16 7 C -0.17 -2.24 8.83 71.98 0.64 -1.61 16 8 C 0.14 4.23 10.43 84.30 0.88 5.11 16 9 C -0.31 -11.75 6.12 -20.16 -0.12 -11.87 16 10 C 0.53 24.64 7.92 70.20 0.56 25.20 16 11 O -0.55 -27.51 14.18 19.73 0.28 -27.23 16 12 O -0.36 -17.20 6.52 -53.96 -0.35 -17.55 16 13 C 0.26 13.39 2.55 29.10 0.07 13.47 16 14 H 0.08 4.18 7.16 -2.39 -0.02 4.17 16 15 C -0.55 -33.02 9.52 25.60 0.24 -32.77 16 16 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 17 C 0.04 2.17 5.45 84.66 0.46 2.63 16 18 N -0.92 -57.83 13.96 21.45 0.30 -57.53 16 19 Si 0.95 45.92 22.92 68.60 1.57 47.49 16 20 H -0.26 -12.14 6.02 99.48 0.60 -11.54 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.20 -9.13 4.91 99.48 0.49 -8.64 16 23 C -0.01 -0.33 5.34 24.83 0.13 -0.20 16 24 C -0.22 -8.69 10.81 22.19 0.24 -8.45 16 25 C -0.20 -6.41 10.91 22.19 0.24 -6.17 16 26 C -0.07 -2.30 11.72 66.96 0.79 -1.51 16 27 O -0.18 -7.72 4.85 0.84 0.00 -7.72 16 28 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.62 6.56 -2.39 -0.02 2.60 16 31 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.96 7.13 -2.39 -0.02 0.95 16 38 H 0.20 5.42 7.24 -2.91 -0.02 5.40 16 39 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.15 5.46 8.06 -2.91 -0.02 5.44 16 41 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.23 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -79.49 350.43 6.80 -72.70 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.70 Total: 22.48 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 6.01 Total: -11.94 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.42 Total: -78.22 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.07 Total: -52.49 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.57 Total: 47.49 kcal Total: -79.49 6.80 -72.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.958 kcal (2) G-P(sol) polarization free energy of solvation -79.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds