Wall clock time and date at job start Tue Mar 31 2020 13:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30432 * 125.99507 * 2 1 4 4 N 1.39928 * 108.91681 * 180.17810 * 3 2 1 5 5 C 1.46506 * 125.74171 * 179.87569 * 4 3 2 6 6 C 1.52997 * 109.47289 * 94.68701 * 5 4 3 7 7 C 1.52992 * 109.46999 * 214.69169 * 5 4 3 8 8 C 1.34221 * 108.51707 * 359.60568 * 4 3 2 9 9 C 1.38134 * 107.40511 * 0.23313 * 8 4 3 10 10 C 1.47288 * 126.42493 * 179.97438 * 9 8 4 11 11 O 1.21517 * 119.99812 * 180.02562 * 10 9 8 12 12 O 1.34757 * 120.00136 * 0.02562 * 10 9 8 13 13 C 1.45197 * 117.00014 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46875 * 329.99974 * 13 12 10 15 15 C 1.50697 * 109.46924 * 210.00053 * 13 12 10 16 16 H 1.07997 * 120.00370 * 0.02562 * 15 13 12 17 17 C 1.37880 * 119.99680 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00196 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99745 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47172 * 90.00553 * 19 17 15 21 21 H 1.48502 * 109.47149 * 210.00558 * 19 17 15 22 22 H 1.48504 * 109.47290 * 330.00211 * 19 17 15 23 23 C 1.50698 * 109.46970 * 90.00462 * 13 12 10 24 24 C 1.34512 * 125.78511 * 219.71501 * 23 13 12 25 25 C 1.41384 * 106.83935 * 179.88670 * 24 23 13 26 26 C 1.34512 * 106.84220 * 0.37510 * 25 24 23 27 27 O 1.34303 * 125.79322 * 40.01892 * 23 13 12 28 28 H 1.09003 * 109.46782 * 270.24784 * 1 2 3 29 29 H 1.08999 * 109.47323 * 30.23886 * 1 2 3 30 30 H 1.08991 * 109.47189 * 150.24714 * 1 2 3 31 31 H 1.08998 * 109.46566 * 334.68435 * 5 4 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00146 * 6 5 4 34 34 H 1.09004 * 109.47261 * 300.00128 * 6 5 4 35 35 H 1.09001 * 109.47066 * 299.99819 * 7 5 4 36 36 H 1.08996 * 109.47747 * 59.99485 * 7 5 4 37 37 H 1.09002 * 109.47103 * 179.97438 * 7 5 4 38 38 H 1.07996 * 126.30097 * 180.22845 * 8 4 3 39 39 H 0.96999 * 119.99719 * 179.97438 * 18 17 15 40 40 H 1.08003 * 126.58290 * 0.02938 * 24 23 13 41 41 H 1.08004 * 126.57634 * 180.16117 * 25 24 23 42 42 H 1.07998 * 125.79113 * 179.75196 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6443 -0.0041 5 6 4.7784 1.5297 -0.0080 6 6 5.2606 1.7444 1.4281 7 6 5.8989 0.8927 -0.8324 8 6 3.6449 -0.6974 0.0021 9 6 2.3376 -1.1436 0.0048 10 6 1.8927 -2.5477 0.0110 11 8 0.7060 -2.8090 0.0124 12 8 2.8017 -3.5425 0.0152 13 6 2.2913 -4.9018 0.0206 14 1 1.3304 -4.9269 0.5344 15 6 3.2666 -5.8016 0.7348 16 1 4.1785 -5.3928 1.1441 17 6 2.9940 -7.1468 0.8667 18 7 1.8833 -7.6446 0.3687 19 14 4.2026 -8.2621 1.7526 20 1 3.8670 -8.3062 3.1986 21 1 4.1211 -9.6314 1.1836 22 1 5.5803 -7.7355 1.5800 23 6 2.1151 -5.3778 -1.3983 24 6 1.0921 -6.1209 -1.8573 25 6 1.3260 -6.3330 -3.2354 26 6 2.4821 -5.7139 -3.5343 27 8 2.9556 -5.1370 -2.4177 28 1 -0.3633 0.0044 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5099 31 1 4.5050 2.4893 -0.4468 32 1 6.1293 2.4027 1.4251 33 1 5.5339 0.7847 1.8668 34 1 4.4622 2.1982 2.0154 35 1 6.1722 -0.0669 -0.3936 36 1 5.5554 0.7398 -1.8554 37 1 6.7672 1.5517 -0.8357 38 1 4.5311 -1.3147 0.0045 39 1 1.6918 -8.5910 0.4612 40 1 0.2519 -6.4838 -1.2837 41 1 0.6986 -6.8888 -3.9166 42 1 2.9504 -5.6858 -4.5071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345976956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:38 Heat of formation + Delta-G solvation = -0.331197 kcal Electronic energy + Delta-G solvation = -26828.935725 eV Core-core repulsion = 22970.742638 eV Total energy + Delta-G solvation = -3858.193087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38959 -41.27270 -39.00795 -36.20553 -35.39967 -33.23899 -31.72047 -31.66399 -30.52696 -29.37512 -27.76750 -27.41870 -26.59486 -24.17474 -22.83325 -21.21387 -20.52520 -20.12773 -19.48191 -19.19340 -17.56418 -16.79129 -16.44273 -16.00831 -15.57454 -15.17472 -14.91825 -14.62978 -14.53891 -14.36561 -14.15704 -13.50207 -13.16548 -12.93326 -12.72861 -12.71744 -12.39012 -12.34558 -11.95083 -11.93436 -11.69613 -11.61958 -11.52612 -11.44543 -11.23731 -11.11946 -10.93828 -10.74794 -10.34915 -10.01456 -9.57858 -9.34394 -9.25046 -8.78494 -8.61830 -8.53596 -7.21394 -6.18735 -4.36443 1.64797 2.28062 2.29688 2.91957 3.22438 3.27775 3.31283 3.68217 3.76917 4.01883 4.18142 4.24259 4.33769 4.53400 4.70897 4.72419 4.82380 5.09799 5.13527 5.14844 5.34651 5.39984 5.45596 5.65279 5.75431 5.79744 5.81395 5.85894 5.91522 6.07475 6.13734 6.16804 6.43005 6.64401 6.82303 6.90511 7.03465 7.20012 7.27729 7.45441 7.69549 7.73422 7.74369 7.91535 8.42187 8.60448 8.87047 9.30311 10.80012 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004074 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.659834 B = 6870.544466 C = 7562.130636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.308 5.308 4 N -0.359 5.359 5 C 0.153 3.847 6 C -0.167 4.167 7 C -0.169 4.169 8 C 0.127 3.873 9 C -0.269 4.269 10 C 0.533 3.467 11 O -0.519 6.519 12 O -0.349 6.349 13 C 0.300 3.700 14 H 0.080 0.920 15 C -0.530 4.530 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.867 5.867 19 Si 0.912 3.088 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.028 3.972 24 C -0.179 4.179 25 C -0.217 4.217 26 C -0.090 4.090 27 O -0.177 6.177 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.189 0.811 39 H 0.268 0.732 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 14.995 -2.230 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.129 5.129 4 N -0.137 5.137 5 C 0.052 3.948 6 C -0.225 4.225 7 C -0.227 4.227 8 C -0.024 4.024 9 C -0.282 4.282 10 C 0.378 3.622 11 O -0.409 6.409 12 O -0.265 6.265 13 C 0.247 3.753 14 H 0.097 0.903 15 C -0.567 4.567 16 H 0.095 0.905 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.739 3.261 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.023 4.023 24 C -0.198 4.198 25 C -0.237 4.237 26 C -0.158 4.158 27 O -0.074 6.074 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.206 0.794 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.311 16.235 -2.228 17.226 hybrid contribution 0.462 -2.066 0.162 2.123 sum 5.773 14.169 -2.066 15.439 Atomic orbital electron populations 1.20358 0.85696 1.04019 1.03552 1.22451 0.97189 0.88567 0.95177 1.77105 0.86046 1.22495 1.27285 1.48614 1.05589 1.04585 1.54952 1.21362 0.82029 0.93584 0.97843 1.22264 1.02094 1.03265 0.94843 1.22253 0.97523 1.02390 1.00575 1.23207 0.99448 0.84862 0.94858 1.19559 0.92397 0.92029 1.24170 1.19963 0.84440 0.85259 0.72582 1.90742 1.17929 1.84789 1.47446 1.86582 1.39545 1.17749 1.82661 1.19141 0.98423 0.72953 0.84809 0.90306 1.20876 1.06974 0.92298 1.36564 0.90536 1.24929 0.95933 0.97607 0.95129 1.70032 1.23492 1.14223 1.42404 0.86261 0.80988 0.79363 0.79501 1.20190 1.20917 1.19524 1.23564 0.88299 1.01264 0.89151 1.21205 1.01755 1.03889 0.92963 1.21685 0.99163 1.05840 0.96994 1.23577 0.97828 1.03904 0.90452 1.83983 1.45890 1.60715 1.16767 0.90190 0.91194 0.88492 0.87765 0.90340 0.91486 0.91515 0.90952 0.91208 0.89779 0.79379 0.92192 0.84107 0.85213 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.92 36.01 0.36 -0.76 16 2 C 0.13 2.21 7.27 -82.01 -0.60 1.61 16 3 N -0.31 -4.76 12.50 33.90 0.42 -4.33 16 4 N -0.36 -4.73 3.50 -54.30 -0.19 -4.92 16 5 C 0.15 1.35 3.91 -67.93 -0.27 1.08 16 6 C -0.17 -1.26 9.52 37.16 0.35 -0.90 16 7 C -0.17 -1.18 8.82 37.15 0.33 -0.86 16 8 C 0.13 1.88 10.43 -16.55 -0.17 1.71 16 9 C -0.27 -4.86 6.13 -105.08 -0.64 -5.51 16 10 C 0.53 11.71 7.92 34.41 0.27 11.98 16 11 O -0.52 -12.30 14.18 -19.28 -0.27 -12.57 16 12 O -0.35 -8.34 9.68 -42.69 -0.41 -8.76 16 13 C 0.30 7.97 2.42 -29.04 -0.07 7.89 16 14 H 0.08 2.24 7.15 -51.93 -0.37 1.87 16 15 C -0.53 -14.53 8.89 -34.44 -0.31 -14.84 16 16 H 0.08 2.05 7.81 -52.49 -0.41 1.64 16 17 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 18 N -0.87 -23.92 10.92 55.43 0.61 -23.32 16 19 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 C 0.03 0.74 5.54 -35.63 -0.20 0.54 16 24 C -0.18 -4.48 9.16 -39.70 -0.36 -4.84 16 25 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 26 C -0.09 -1.88 12.09 29.42 0.36 -1.52 16 27 O -0.18 -4.37 10.65 4.47 0.05 -4.33 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 1.55 6.55 -51.93 -0.34 1.21 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.52 7.13 -51.93 -0.37 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.19 2.38 7.23 -52.49 -0.38 2.00 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.14 3.61 7.85 -52.48 -0.41 3.20 16 41 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 42 H 0.18 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -32.76 363.79 -6.46 -39.22 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.65 Total: 5.53 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.48 Total: -7.76 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.84 Total: -32.56 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.64 Total: -25.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.76 -6.46 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.885 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds